Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47839 * 111.00055 * 2 1 4 4 C 1.54901 * 104.79717 * 146.36425 * 3 2 1 5 5 C 1.55134 * 101.65264 * 322.92545 * 4 3 2 6 6 H 1.09000 * 110.85837 * 277.20036 * 5 4 3 7 7 C 1.53006 * 110.70620 * 154.03854 * 5 4 3 8 8 C 1.53005 * 112.99624 * 305.58576 * 7 5 4 9 9 C 1.50701 * 109.47049 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99426 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99982 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99714 * 180.02562 * 11 9 8 13 13 Si 1.86791 * 120.00042 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47283 * 89.99984 * 13 11 9 15 15 H 1.48501 * 109.47262 * 209.99673 * 13 11 9 16 16 H 1.48501 * 109.47431 * 329.99635 * 13 11 9 17 17 C 1.54032 * 113.81629 * 173.76363 * 7 5 4 18 18 O 1.44448 * 85.42506 * 223.23474 * 17 7 5 19 19 C 1.44177 * 93.37941 * 24.08692 * 18 17 7 20 20 C 1.47448 * 110.99572 * 120.84038 * 2 1 3 21 21 H 1.09009 * 109.46632 * 299.16290 * 1 2 3 22 22 H 1.08999 * 109.47133 * 59.15740 * 1 2 3 23 23 H 1.08993 * 109.47067 * 179.16582 * 1 2 3 24 24 H 1.09000 * 110.37086 * 265.19215 * 3 2 1 25 25 H 1.09000 * 110.37770 * 27.41645 * 3 2 1 26 26 H 1.09000 * 110.99322 * 204.83268 * 4 3 2 27 27 H 1.09004 * 110.99251 * 81.02184 * 4 3 2 28 28 H 1.08997 * 109.46991 * 299.99992 * 8 7 5 29 29 H 1.08992 * 109.47287 * 60.00091 * 8 7 5 30 30 H 0.96998 * 119.99753 * 180.02562 * 12 11 9 31 31 H 1.09001 * 113.86599 * 337.33757 * 17 7 5 32 32 H 1.08994 * 113.86902 * 109.04763 * 17 7 5 33 33 H 1.08996 * 113.86732 * 221.77325 * 19 18 17 34 34 H 1.09001 * 113.98334 * 90.07579 * 19 18 17 35 35 H 1.08993 * 109.88473 * 117.33880 * 20 2 1 36 36 H 1.08992 * 110.02658 * 356.21983 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9159 0.2823 1.9315 6 1 2.3753 0.7725 2.7411 7 6 4.1570 -0.4337 2.4681 8 6 4.9883 -1.0953 1.3671 9 6 6.1853 -1.7746 1.9809 10 1 6.3376 -1.7384 3.0496 11 6 7.0854 -2.4430 1.1785 12 7 8.1298 -3.0363 1.7143 13 14 6.8216 -2.5061 -0.6696 14 1 7.4954 -1.3457 -1.3058 15 1 7.3927 -3.7666 -1.2085 16 1 5.3669 -2.4563 -0.9640 17 6 3.8733 -1.3534 3.6707 18 8 5.0781 -0.7923 4.2365 19 6 4.9876 0.4132 3.4507 20 6 1.9974 -0.7057 1.1819 21 1 -0.3633 0.5008 0.8975 22 1 -0.3633 0.5269 -0.8823 23 1 -0.3633 -1.0275 -0.0150 24 1 2.2148 1.7037 -1.0182 25 1 1.2881 2.0596 0.4705 26 1 3.5496 2.2720 1.2639 27 1 4.1303 0.9281 0.2242 28 1 4.3793 -1.8340 0.8462 29 1 5.3236 -0.3369 0.6597 30 1 8.7632 -3.5062 1.1497 31 1 2.9671 -1.0956 4.2189 32 1 3.9463 -2.4161 3.4402 33 1 5.9424 0.7484 3.0459 34 1 4.4230 1.2130 3.9298 35 1 2.5697 -1.5784 0.8675 36 1 1.1772 -1.0141 1.8301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259258141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = -3.361911 kcal Electronic energy + Delta-G solvation = -16593.023217 eV Core-core repulsion = 14078.619706 eV Total energy + Delta-G solvation = -2514.403512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35116 -38.22102 -33.33986 -32.31229 -30.14570 -28.52944 -26.81361 -25.73223 -24.94263 -22.45818 -20.96957 -20.70635 -17.69090 -17.12847 -15.89783 -15.51869 -15.01042 -14.85550 -14.27519 -14.00761 -13.65387 -13.45398 -12.77241 -12.54566 -12.33197 -12.24313 -11.56371 -11.49354 -11.41196 -11.17132 -11.03032 -10.70133 -10.40226 -9.94517 -9.86964 -9.59011 -9.44612 -9.24813 -8.44232 -8.33829 -8.13694 -5.90775 -3.88682 3.36209 3.44800 3.49447 4.14864 4.51452 4.58787 4.62968 4.89728 5.10993 5.25791 5.38018 5.40925 5.46994 5.50763 5.66501 5.69763 5.80764 5.82314 5.84194 5.86854 5.99336 6.17574 6.26490 6.35386 6.50403 6.59074 6.78950 6.94245 7.02748 7.08857 7.18140 7.26908 7.34442 7.87255 8.69709 9.31879 9.71091 11.21411 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025241 B = 0.010540 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.051026 B = 2655.890539 C = 3326.018098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.042 3.958 4 C -0.128 4.128 5 C -0.101 4.101 6 H 0.066 0.934 7 C -0.093 4.093 8 C 0.010 3.990 9 C -0.525 4.525 10 H 0.104 0.896 11 C 0.068 3.932 12 N -0.903 5.903 13 Si 0.865 3.135 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.264 1.264 17 C 0.046 3.954 18 O -0.359 6.359 19 C 0.047 3.953 20 C 0.044 3.956 21 H 0.022 0.978 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.025 0.975 29 H 0.019 0.981 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 8.217 -1.519 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.259 5.259 3 C -0.086 4.086 4 C -0.165 4.165 5 C -0.121 4.121 6 H 0.085 0.915 7 C -0.094 4.094 8 C -0.027 4.027 9 C -0.563 4.563 10 H 0.122 0.878 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.693 3.307 14 H -0.206 1.206 15 H -0.216 1.216 16 H -0.188 1.188 17 C -0.031 4.031 18 O -0.277 6.277 19 C -0.030 4.030 20 C -0.083 4.083 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.345 7.746 -1.825 15.538 hybrid contribution -0.502 0.389 -0.467 0.788 sum -13.847 8.135 -2.292 16.222 Atomic orbital electron populations 1.22513 0.88374 1.01767 1.00036 1.63583 1.07237 1.14364 1.40698 1.23047 0.95876 0.89271 1.00363 1.22839 0.97844 0.98882 0.96982 1.22472 0.96519 0.96038 0.97067 0.91518 1.23450 0.93832 0.95180 0.96921 1.19445 0.95202 0.95359 0.92645 1.21672 1.05212 1.31561 0.97822 0.87797 1.25016 0.95161 0.95331 0.97756 1.69919 1.13213 1.35903 1.35259 0.87007 0.79092 0.77383 0.87229 1.20555 1.21631 1.18821 1.23885 0.87424 1.00222 0.91557 1.89729 1.41614 1.31225 1.65146 1.23818 1.00488 0.88532 0.90126 1.22983 0.97322 0.98293 0.89751 0.95906 0.91803 0.91567 0.90613 0.94156 0.91207 0.89330 0.95719 0.96289 0.93012 0.92546 0.88982 0.89066 0.92578 0.89128 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.12 60.07 0.55 0.80 16 2 N -0.53 -7.69 5.44 -239.52 -1.30 -9.00 16 3 C 0.04 0.55 6.73 -2.30 -0.02 0.53 16 4 C -0.13 -1.84 6.40 -24.60 -0.16 -2.00 16 5 C -0.10 -1.54 2.44 -88.80 -0.22 -1.76 16 6 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 7 C -0.09 -1.74 0.62 -153.42 -0.10 -1.84 16 8 C 0.01 0.24 3.11 -27.88 -0.09 0.15 16 9 C -0.52 -14.60 8.37 -34.44 -0.29 -14.89 16 10 H 0.10 3.16 5.43 -52.48 -0.28 2.88 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 13 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 17 C 0.05 0.87 7.78 37.64 0.29 1.16 16 18 O -0.36 -7.94 10.09 -35.23 -0.36 -8.30 16 19 C 0.05 0.89 7.86 37.64 0.30 1.19 16 20 C 0.04 0.66 6.23 -2.83 -0.02 0.65 16 21 H 0.02 0.24 8.10 -51.92 -0.42 -0.18 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.47 7.78 -51.93 -0.40 0.06 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.47 5.93 -51.93 -0.31 1.16 16 28 H 0.02 0.58 5.47 -51.93 -0.28 0.30 16 29 H 0.02 0.44 5.77 -51.93 -0.30 0.14 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.09 1.85 7.94 -51.93 -0.41 1.44 16 33 H 0.09 1.84 7.94 -51.93 -0.41 1.42 16 34 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.09 1.59 5.99 -51.93 -0.31 1.28 16 36 H 0.05 0.66 7.59 -51.93 -0.39 0.27 16 LS Contribution 275.00 15.07 4.14 4.14 Total: -1.00 -31.18 275.00 -6.90 -38.08 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.65 Total: -0.49 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 0.16 Total: -14.13 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.53 Total: -36.40 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.36 Total: -8.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.18 -6.90 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259258141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.718 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds