Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47839 * 111.00055 * 2 1 4 4 C 1.54901 * 104.79717 * 146.36425 * 3 2 1 5 5 C 1.55134 * 101.65264 * 322.92545 * 4 3 2 6 6 H 1.09000 * 110.85837 * 277.20036 * 5 4 3 7 7 C 1.53006 * 110.70620 * 154.03854 * 5 4 3 8 8 C 1.53005 * 112.99624 * 305.58576 * 7 5 4 9 9 C 1.50701 * 109.47049 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99426 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99982 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99714 * 180.02562 * 11 9 8 13 13 Si 1.86791 * 120.00042 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47283 * 89.99984 * 13 11 9 15 15 H 1.48501 * 109.47262 * 209.99673 * 13 11 9 16 16 H 1.48501 * 109.47431 * 329.99635 * 13 11 9 17 17 C 1.54032 * 113.81629 * 173.76363 * 7 5 4 18 18 O 1.44448 * 85.42506 * 223.23474 * 17 7 5 19 19 C 1.44177 * 93.37941 * 24.08692 * 18 17 7 20 20 C 1.47448 * 110.99572 * 120.84038 * 2 1 3 21 21 H 1.09009 * 109.46632 * 299.16290 * 1 2 3 22 22 H 1.08999 * 109.47133 * 59.15740 * 1 2 3 23 23 H 1.08993 * 109.47067 * 179.16582 * 1 2 3 24 24 H 1.09000 * 110.37086 * 265.19215 * 3 2 1 25 25 H 1.09000 * 110.37770 * 27.41645 * 3 2 1 26 26 H 1.09000 * 110.99322 * 204.83268 * 4 3 2 27 27 H 1.09004 * 110.99251 * 81.02184 * 4 3 2 28 28 H 1.08997 * 109.46991 * 299.99992 * 8 7 5 29 29 H 1.08992 * 109.47287 * 60.00091 * 8 7 5 30 30 H 0.96998 * 119.99753 * 180.02562 * 12 11 9 31 31 H 1.09001 * 113.86599 * 337.33757 * 17 7 5 32 32 H 1.08994 * 113.86902 * 109.04763 * 17 7 5 33 33 H 1.08996 * 113.86732 * 221.77325 * 19 18 17 34 34 H 1.09001 * 113.98334 * 90.07579 * 19 18 17 35 35 H 1.08993 * 109.88473 * 117.33880 * 20 2 1 36 36 H 1.08992 * 110.02658 * 356.21983 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9159 0.2823 1.9315 6 1 2.3753 0.7725 2.7411 7 6 4.1570 -0.4337 2.4681 8 6 4.9883 -1.0953 1.3671 9 6 6.1853 -1.7746 1.9809 10 1 6.3376 -1.7384 3.0496 11 6 7.0854 -2.4430 1.1785 12 7 8.1298 -3.0363 1.7143 13 14 6.8216 -2.5061 -0.6696 14 1 7.4954 -1.3457 -1.3058 15 1 7.3927 -3.7666 -1.2085 16 1 5.3669 -2.4563 -0.9640 17 6 3.8733 -1.3534 3.6707 18 8 5.0781 -0.7923 4.2365 19 6 4.9876 0.4132 3.4507 20 6 1.9974 -0.7057 1.1819 21 1 -0.3633 0.5008 0.8975 22 1 -0.3633 0.5269 -0.8823 23 1 -0.3633 -1.0275 -0.0150 24 1 2.2148 1.7037 -1.0182 25 1 1.2881 2.0596 0.4705 26 1 3.5496 2.2720 1.2639 27 1 4.1303 0.9281 0.2242 28 1 4.3793 -1.8340 0.8462 29 1 5.3236 -0.3369 0.6597 30 1 8.7632 -3.5062 1.1497 31 1 2.9671 -1.0956 4.2189 32 1 3.9463 -2.4161 3.4402 33 1 5.9424 0.7484 3.0459 34 1 4.4230 1.2130 3.9298 35 1 2.5697 -1.5784 0.8675 36 1 1.1772 -1.0141 1.8301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259258141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = -26.082371 kcal Electronic energy + Delta-G solvation = -16594.008451 eV Core-core repulsion = 14078.619706 eV Total energy + Delta-G solvation = -2515.388745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.82383 -39.39595 -35.11251 -34.03670 -31.56741 -30.00860 -28.27844 -27.20848 -26.01911 -24.46038 -22.15200 -21.79724 -19.24555 -19.10911 -17.22856 -16.79971 -16.57075 -16.40799 -16.07018 -15.21777 -14.98094 -14.76040 -14.44820 -14.08045 -13.67339 -13.62211 -13.02917 -12.99561 -12.70499 -12.53286 -12.26177 -12.19557 -11.91421 -11.82382 -11.41874 -11.30916 -11.09322 -10.81005 -10.64863 -10.04360 -9.17635 -8.16173 -6.17646 1.34573 1.37664 1.48549 2.40861 3.04690 3.14169 3.15696 3.33026 3.76696 3.96243 4.07683 4.26652 4.42525 4.46367 4.49184 4.49732 4.53647 4.63335 4.69767 4.80304 4.91549 4.99327 5.02276 5.10475 5.13718 5.19632 5.28241 5.45028 5.50707 5.55706 5.61162 5.76751 6.06290 6.23238 6.49992 7.03789 7.45211 8.99227 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025241 B = 0.010540 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.051026 B = 2655.890539 C = 3326.018098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.558 5.558 3 C 0.047 3.953 4 C -0.130 4.130 5 C -0.092 4.092 6 H 0.095 0.905 7 C -0.088 4.088 8 C 0.016 3.984 9 C -0.520 4.520 10 H 0.070 0.930 11 C 0.003 3.997 12 N -0.956 5.956 13 Si 0.933 3.067 14 H -0.271 1.271 15 H -0.291 1.291 16 H -0.250 1.250 17 C 0.048 3.952 18 O -0.402 6.402 19 C 0.050 3.950 20 C 0.046 3.954 21 H 0.035 0.965 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.260 0.740 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.562 10.058 -2.271 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.282 5.282 3 C -0.080 4.080 4 C -0.167 4.167 5 C -0.111 4.111 6 H 0.114 0.886 7 C -0.089 4.089 8 C -0.021 4.021 9 C -0.558 4.558 10 H 0.088 0.912 11 C -0.193 4.193 12 N -0.598 5.598 13 Si 0.758 3.242 14 H -0.197 1.197 15 H -0.217 1.217 16 H -0.173 1.173 17 C -0.029 4.029 18 O -0.321 6.321 19 C -0.027 4.027 20 C -0.082 4.082 21 H 0.054 0.946 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.104 9.606 -2.585 18.929 hybrid contribution 0.342 -0.181 -0.157 0.418 sum -15.763 9.425 -2.742 18.569 Atomic orbital electron populations 1.22558 0.86510 1.02314 1.01220 1.63512 1.09135 1.15194 1.40371 1.23045 0.95376 0.89048 1.00571 1.22832 0.97779 0.99468 0.96658 1.22398 0.94709 0.95970 0.98041 0.88646 1.23186 0.94899 0.95212 0.95586 1.19303 0.93757 0.95094 0.93919 1.21990 1.06541 1.30703 0.96613 0.91195 1.25893 0.95040 0.95444 1.02878 1.70083 1.14735 1.37861 1.37125 0.85913 0.79682 0.77389 0.81204 1.19656 1.21733 1.17328 1.24022 0.87899 0.98924 0.92042 1.89696 1.43483 1.32971 1.65940 1.23963 0.99993 0.88700 0.90038 1.22851 0.97581 0.97342 0.90383 0.94642 0.90597 0.91455 0.90285 0.91898 0.89127 0.92134 0.96150 0.96103 0.93112 0.88287 0.91492 0.91456 0.88220 0.92360 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.12 127.69 1.16 1.59 16 2 N -0.56 -14.25 5.44 -911.71 -4.96 -19.22 16 3 C 0.05 1.04 6.73 86.77 0.58 1.63 16 4 C -0.13 -3.33 6.40 31.98 0.20 -3.12 16 5 C -0.09 -2.49 2.44 -9.61 -0.02 -2.51 16 6 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 7 C -0.09 -3.17 0.62 -51.48 -0.03 -3.20 16 8 C 0.02 0.74 3.11 29.85 0.09 0.83 16 9 C -0.52 -29.82 8.37 25.60 0.21 -29.60 16 10 H 0.07 4.46 5.43 -2.91 -0.02 4.44 16 11 C 0.00 0.16 5.47 84.65 0.46 0.63 16 12 N -0.96 -61.86 13.96 21.45 0.30 -61.56 16 13 Si 0.93 45.78 27.47 68.60 1.88 47.66 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 16 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 17 C 0.05 1.75 7.78 72.29 0.56 2.31 16 18 O -0.40 -17.84 10.09 -148.98 -1.50 -19.34 16 19 C 0.05 1.80 7.86 72.30 0.57 2.37 16 20 C 0.05 1.27 6.23 86.65 0.54 1.81 16 21 H 0.04 0.59 8.10 -2.38 -0.02 0.57 16 22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.14 7.78 -2.39 -0.02 1.12 16 26 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.90 5.93 -2.38 -0.01 1.89 16 28 H 0.02 0.96 5.47 -2.39 -0.01 0.94 16 29 H 0.02 0.95 5.77 -2.39 -0.01 0.94 16 30 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 31 H 0.10 2.79 8.10 -2.39 -0.02 2.77 16 32 H 0.07 2.74 7.94 -2.39 -0.02 2.73 16 33 H 0.07 2.73 7.94 -2.39 -0.02 2.71 16 34 H 0.10 2.76 8.10 -2.39 -0.02 2.74 16 35 H 0.06 1.98 5.99 -2.39 -0.01 1.97 16 36 H 0.07 1.57 7.59 -2.39 -0.02 1.55 16 Total: -1.00 -69.72 275.00 1.05 -68.67 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.99 Total: 11.06 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 4.34 Total: -27.28 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -4.66 Total: -80.78 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.50 Total: -19.34 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -69.72 1.05 -68.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259258141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.588 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds