Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46846 * 111.00046 * 2 1 4 4 C 1.53039 * 109.51996 * 174.15767 * 3 2 1 5 5 C 1.53116 * 109.27617 * 59.18582 * 4 3 2 6 6 C 1.53127 * 109.15809 * 302.34120 * 5 4 3 7 7 H 1.08999 * 109.53371 * 297.69147 * 6 5 4 8 8 C 1.53002 * 109.50090 * 177.59801 * 6 5 4 9 9 C 1.50701 * 113.00077 * 299.93853 * 8 6 5 10 10 H 1.08005 * 119.99589 * 0.02562 * 9 8 6 11 11 C 1.37869 * 120.00147 * 179.97438 * 9 8 6 12 12 N 1.31519 * 120.00115 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00122 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47397 * 60.00037 * 13 11 9 15 15 H 1.48506 * 109.47143 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46899 * 300.00326 * 13 11 9 17 17 C 1.54037 * 113.81463 * 168.11760 * 8 6 5 18 18 O 1.44447 * 85.42363 * 223.23514 * 17 8 6 19 19 C 1.44179 * 93.38308 * 24.08652 * 18 17 8 20 20 C 1.46849 * 110.99696 * 235.78915 * 2 1 3 21 21 H 1.08996 * 109.47334 * 184.21208 * 1 2 3 22 22 H 1.08996 * 109.47020 * 64.20285 * 1 2 3 23 23 H 1.09005 * 109.46795 * 304.20878 * 1 2 3 24 24 H 1.08990 * 109.46366 * 294.18045 * 3 2 1 25 25 H 1.09003 * 109.45760 * 54.14978 * 3 2 1 26 26 H 1.08997 * 109.50664 * 299.24017 * 4 3 2 27 27 H 1.09007 * 109.52884 * 179.14058 * 4 3 2 28 28 H 1.08999 * 109.52365 * 182.44086 * 5 4 3 29 29 H 1.09004 * 109.57659 * 62.27559 * 5 4 3 30 30 H 0.97001 * 119.99864 * 179.97438 * 12 11 9 31 31 H 1.09002 * 113.86505 * 337.33480 * 17 8 6 32 32 H 1.08992 * 113.86665 * 109.05047 * 17 8 6 33 33 H 1.08991 * 113.86888 * 221.76750 * 19 18 17 34 34 H 1.08999 * 113.98053 * 90.07081 * 19 18 17 35 35 H 1.08997 * 109.46695 * 305.85922 * 20 2 1 36 36 H 1.09007 * 109.46035 * 65.82995 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5181 -0.8715 -1.0208 7 1 3.7813 -1.3843 -0.0957 8 6 4.0680 -1.6559 -2.2139 9 6 3.7440 -1.0158 -3.5392 10 1 3.1777 -0.0967 -3.5708 11 6 4.1714 -1.6029 -4.7111 12 7 4.8615 -2.7219 -4.6725 13 14 3.7705 -0.8091 -6.3539 14 1 4.3569 0.5544 -6.4011 15 1 4.3384 -1.6311 -7.4526 16 1 2.2968 -0.7199 -6.5139 17 6 3.7622 -3.1646 -2.1606 18 8 5.1316 -3.3396 -2.5854 19 6 5.5465 -2.0611 -2.0638 20 6 1.9953 -0.7708 -1.1338 21 1 -0.3634 -1.0248 0.0755 22 1 -0.3633 0.4472 -0.9252 23 1 -0.3633 0.5778 0.8499 24 1 1.7325 1.8608 -0.9374 25 1 1.5635 1.9256 0.8331 26 1 3.7814 0.8566 1.0907 27 1 3.9105 2.3510 0.1315 28 1 5.1998 0.4713 -0.8905 29 1 3.8897 1.0351 -1.9564 30 1 5.1619 -3.1351 -5.4971 31 1 3.5608 -3.5386 -1.1568 32 1 3.0261 -3.4916 -2.8950 33 1 6.2225 -1.5147 -2.7214 34 1 5.8916 -2.0952 -1.0304 35 1 1.5634 -1.7715 -1.1243 36 1 1.7325 -0.2708 -2.0661 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259341907.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = -15.198232 kcal Electronic energy + Delta-G solvation = -16866.091158 eV Core-core repulsion = 14351.174385 eV Total energy + Delta-G solvation = -2514.916773 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13547 -39.21544 -34.79275 -34.13096 -32.48524 -28.86513 -27.63101 -26.65068 -26.52496 -23.63998 -23.36622 -20.66300 -20.52320 -17.79098 -17.18754 -16.49857 -16.03011 -15.80250 -15.68292 -15.55746 -15.15409 -14.57399 -14.19055 -13.78061 -13.50757 -13.35515 -13.04264 -12.82382 -12.67236 -12.57395 -12.40788 -12.17745 -11.76220 -11.67179 -11.54210 -11.02103 -10.82757 -10.39586 -10.18139 -9.57506 -9.17589 -7.77882 -6.14103 1.41048 1.42716 1.48721 2.45138 3.09480 3.22082 3.62994 3.99231 4.10394 4.18987 4.35763 4.54213 4.58363 4.63021 4.68470 4.69043 4.70621 4.85688 4.87249 5.02498 5.03731 5.04886 5.12385 5.21046 5.26763 5.36497 5.42280 5.61000 5.66230 5.82348 5.94303 6.15839 6.23364 6.30202 6.46213 6.95501 7.52751 9.02109 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027517 B = 0.010398 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.322269 B = 2692.141036 C = 3026.689885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.056 3.944 4 C -0.110 4.110 5 C -0.104 4.104 6 C -0.062 4.062 7 H 0.058 0.942 8 C 0.035 3.965 9 C -0.515 4.515 10 H 0.056 0.944 11 C 0.021 3.979 12 N -0.853 5.853 13 Si 0.935 3.065 14 H -0.274 1.274 15 H -0.291 1.291 16 H -0.275 1.275 17 C 0.032 3.968 18 O -0.349 6.349 19 C 0.035 3.965 20 C 0.081 3.919 21 H 0.068 0.932 22 H 0.018 0.982 23 H 0.085 0.915 24 H 0.020 0.980 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.247 0.753 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 6.849 8.953 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.071 4.071 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.081 4.081 7 H 0.077 0.923 8 C 0.034 3.966 9 C -0.552 4.552 10 H 0.074 0.926 11 C -0.182 4.182 12 N -0.489 5.489 13 Si 0.762 3.238 14 H -0.199 1.199 15 H -0.217 1.217 16 H -0.200 1.200 17 C -0.046 4.046 18 O -0.266 6.266 19 C -0.043 4.043 20 C -0.047 4.047 21 H 0.087 0.913 22 H 0.036 0.964 23 H 0.103 0.897 24 H 0.038 0.962 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -5.065 6.257 9.117 12.162 hybrid contribution -0.336 0.453 -2.079 2.154 sum -5.401 6.710 7.038 11.123 Atomic orbital electron populations 1.22390 0.86692 1.02545 1.00636 1.62014 1.08285 1.14113 1.43378 1.22129 0.95991 0.88800 1.00214 1.21591 0.94292 1.00391 0.98512 1.21445 0.99335 0.95234 0.98139 1.21062 0.93953 0.96254 0.96827 0.92334 1.20921 0.90866 0.90921 0.93878 1.20764 1.35657 1.08859 0.89965 0.92628 1.25814 0.95232 0.95477 1.01717 1.70765 1.34831 1.17320 1.25952 0.85997 0.78362 0.78590 0.80869 1.19899 1.21740 1.20043 1.23905 0.86273 0.99093 0.95324 1.89813 1.22577 1.37282 1.76911 1.23824 0.99643 0.86269 0.94591 1.21816 0.95330 0.97044 0.90462 0.91345 0.96383 0.89654 0.96157 0.89054 0.91158 0.90206 0.92777 0.93515 0.94330 0.92767 0.93811 0.93783 0.92750 0.92316 0.96217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.59 127.69 1.22 1.85 16 2 N -0.55 -16.66 4.91 -922.58 -4.53 -21.19 16 3 C 0.06 1.51 5.46 86.33 0.47 1.99 16 4 C -0.11 -3.00 6.09 30.65 0.19 -2.81 16 5 C -0.10 -3.64 5.00 30.68 0.15 -3.49 16 6 C -0.06 -2.40 1.80 -10.74 -0.02 -2.41 16 7 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 8 C 0.04 1.65 0.55 -52.23 -0.03 1.62 16 9 C -0.51 -26.84 7.27 25.60 0.19 -26.65 16 10 H 0.06 2.88 6.24 -2.91 -0.02 2.86 16 11 C 0.02 1.16 5.20 84.65 0.44 1.60 16 12 N -0.85 -49.25 9.23 21.45 0.20 -49.06 16 13 Si 0.94 43.27 29.54 68.60 2.03 45.30 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 C 0.03 1.57 7.40 72.30 0.54 2.10 16 18 O -0.35 -19.02 9.43 -148.98 -1.40 -20.43 16 19 C 0.03 1.70 7.41 72.30 0.54 2.23 16 20 C 0.08 2.98 4.45 86.32 0.38 3.36 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.08 1.68 8.09 -2.38 -0.02 1.66 16 24 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 1.97 8.09 -2.39 -0.02 1.95 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.05 1.89 7.92 -2.39 -0.02 1.87 16 29 H 0.05 1.82 6.86 -2.39 -0.02 1.81 16 30 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.05 2.34 8.10 -2.39 -0.02 2.32 16 32 H 0.04 2.30 8.05 -2.39 -0.02 2.28 16 33 H 0.04 2.31 8.04 -2.39 -0.02 2.29 16 34 H 0.05 2.33 8.10 -2.39 -0.02 2.31 16 35 H 0.06 2.20 7.87 -2.39 -0.02 2.18 16 36 H 0.02 0.81 6.88 -2.38 -0.02 0.79 16 Total: -1.00 -59.66 276.06 1.39 -58.27 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.03 Total: 7.72 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 4.07 Total: -20.62 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -4.33 Total: -70.25 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.40 Total: -20.43 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -59.66 1.39 -58.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259341907.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.070 kcal (2) G-P(sol) polarization free energy of solvation -59.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds