Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46843 * 111.00022 * 2 1 4 4 C 1.53039 * 109.52391 * 185.84211 * 3 2 1 5 5 C 1.53124 * 109.27498 * 300.81655 * 4 3 2 6 6 C 1.53126 * 109.15878 * 57.65601 * 5 4 3 7 7 H 1.08994 * 109.50285 * 62.28827 * 6 5 4 8 8 C 1.53005 * 109.49931 * 182.36465 * 6 5 4 9 9 C 1.50695 * 113.00160 * 48.17368 * 8 6 5 10 10 H 1.07995 * 119.99841 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00037 * 179.97438 * 9 8 6 12 12 N 1.31521 * 120.00215 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00097 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47389 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47050 * 120.00141 * 13 11 9 16 16 H 1.48505 * 109.47169 * 239.99607 * 13 11 9 17 17 C 1.54041 * 113.81400 * 276.18513 * 8 6 5 18 18 O 1.44174 * 85.51614 * 223.20021 * 17 8 6 19 19 C 1.44181 * 93.34385 * 24.19350 * 18 17 8 20 20 C 1.46854 * 111.00034 * 124.20878 * 2 1 3 21 21 H 1.09001 * 109.46727 * 295.78943 * 1 2 3 22 22 H 1.09000 * 109.47173 * 55.78993 * 1 2 3 23 23 H 1.09004 * 109.47364 * 175.79491 * 1 2 3 24 24 H 1.09001 * 109.45906 * 305.85080 * 3 2 1 25 25 H 1.08994 * 109.46526 * 65.83386 * 3 2 1 26 26 H 1.08997 * 109.50468 * 180.87980 * 4 3 2 27 27 H 1.09004 * 109.50358 * 60.75551 * 4 3 2 28 28 H 1.08998 * 109.52745 * 297.74929 * 5 4 3 29 29 H 1.08999 * 109.52030 * 177.55385 * 5 4 3 30 30 H 0.96996 * 120.00492 * 180.02562 * 12 11 9 31 31 H 1.08995 * 113.86382 * 337.34626 * 17 8 6 32 32 H 1.08996 * 113.86138 * 109.05297 * 17 8 6 33 33 H 1.08999 * 113.86948 * 221.66304 * 19 18 17 34 34 H 1.08997 * 113.97893 * 89.96433 * 19 18 17 35 35 H 1.08999 * 109.45788 * 54.14266 * 20 2 1 36 36 H 1.09001 * 109.46218 * 294.17869 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8715 1.0209 7 1 3.7813 -1.3837 0.0955 8 6 4.0688 -1.6561 2.2134 9 6 3.9998 -0.8865 3.5071 10 1 3.5917 0.1133 3.5196 11 6 4.4579 -1.4586 4.6749 12 7 4.9554 -2.6760 4.6597 13 14 4.3731 -0.5043 6.2785 14 1 3.7763 0.8322 6.0282 15 1 3.5329 -1.2465 7.2524 16 1 5.7422 -0.3403 6.8299 17 6 5.4375 -2.3112 1.9483 18 8 4.8873 -3.4654 2.6145 19 6 3.5265 -3.0943 2.3155 20 6 1.9953 -0.7708 1.1338 21 1 -0.3633 0.4471 0.9253 22 1 -0.3633 0.5778 -0.8499 23 1 -0.3634 -1.0249 -0.0754 24 1 1.5634 1.9256 -0.8330 25 1 1.7327 1.8607 0.9376 26 1 3.9099 2.3512 -0.1311 27 1 3.7813 0.8566 -1.0907 28 1 3.8888 1.0354 1.9560 29 1 5.1997 0.4713 0.8904 30 1 5.2773 -3.0787 5.4813 31 1 5.6521 -2.4724 0.8919 32 1 6.2620 -1.8430 2.4860 33 1 2.8354 -3.2471 3.1444 34 1 3.1556 -3.4938 1.3716 35 1 1.5634 -1.7715 1.1243 36 1 1.7325 -0.2709 2.0661 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259341915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -14.216958 kcal Electronic energy + Delta-G solvation = -16865.672285 eV Core-core repulsion = 14350.798063 eV Total energy + Delta-G solvation = -2514.874222 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16233 -39.22225 -34.83675 -34.10143 -32.48673 -28.89208 -27.60547 -26.68619 -26.51573 -23.71442 -23.29413 -20.65998 -20.53003 -17.78513 -17.20401 -16.49602 -16.11529 -15.81078 -15.67436 -15.51457 -15.13220 -14.60699 -14.17678 -13.78227 -13.51803 -13.39980 -13.05085 -12.78289 -12.72911 -12.54232 -12.41871 -12.18838 -11.70266 -11.64145 -11.56229 -10.95110 -10.84237 -10.40432 -10.18745 -9.56679 -9.19007 -7.78159 -6.14037 1.38636 1.43090 1.51353 2.45094 3.08929 3.21661 3.63133 3.99925 4.10782 4.19924 4.32786 4.54422 4.58753 4.63399 4.67043 4.68954 4.70941 4.85322 4.87303 5.01812 5.03860 5.04570 5.12099 5.21280 5.26930 5.35523 5.42906 5.62349 5.65388 5.85613 5.94111 6.16062 6.22943 6.29733 6.46981 6.96274 7.53000 9.02332 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.010254 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.010243 B = 2729.935599 C = 3038.902691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.057 3.943 4 C -0.111 4.111 5 C -0.104 4.104 6 C -0.062 4.062 7 H 0.058 0.942 8 C 0.034 3.966 9 C -0.514 4.514 10 H 0.059 0.941 11 C 0.020 3.980 12 N -0.854 5.854 13 Si 0.936 3.064 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.286 1.286 17 C 0.033 3.967 18 O -0.348 6.348 19 C 0.034 3.966 20 C 0.080 3.920 21 H 0.018 0.982 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.020 0.980 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.246 0.754 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 6.732 -8.935 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.071 4.071 4 C -0.149 4.149 5 C -0.141 4.141 6 C -0.081 4.081 7 H 0.077 0.923 8 C 0.033 3.967 9 C -0.551 4.551 10 H 0.077 0.923 11 C -0.184 4.184 12 N -0.490 5.490 13 Si 0.763 3.237 14 H -0.192 1.192 15 H -0.214 1.214 16 H -0.213 1.213 17 C -0.045 4.045 18 O -0.265 6.265 19 C -0.045 4.045 20 C -0.048 4.048 21 H 0.037 0.963 22 H 0.103 0.897 23 H 0.087 0.913 24 H 0.110 0.890 25 H 0.039 0.961 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.416 6.130 -9.099 12.235 hybrid contribution -0.139 0.515 2.061 2.129 sum -5.555 6.645 -7.038 11.160 Atomic orbital electron populations 1.22397 0.86620 1.02596 1.00676 1.62009 1.08329 1.14110 1.43271 1.22128 0.95961 0.88805 1.00220 1.21607 0.94333 1.00374 0.98575 1.21475 0.99249 0.95261 0.98132 1.21067 0.93881 0.96335 0.96860 0.92316 1.20943 0.90717 0.91251 0.93794 1.20882 1.41847 1.00752 0.91620 0.92304 1.25833 0.95306 0.95677 1.01543 1.70781 1.38853 1.13460 1.25869 0.85855 0.77292 0.79270 0.81265 1.19244 1.21368 1.21258 1.23876 0.99220 0.88029 0.93364 1.89775 1.18048 1.44692 1.74008 1.23839 0.86823 0.97573 0.96226 1.21824 0.95318 0.97154 0.90473 0.96320 0.89667 0.91265 0.89048 0.96140 0.90302 0.91216 0.93258 0.92977 0.94370 0.92716 0.93749 0.93898 0.92813 0.92018 0.96427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.59 127.69 1.22 1.83 16 2 N -0.55 -16.50 4.91 -922.59 -4.53 -21.03 16 3 C 0.06 1.52 5.46 86.33 0.47 1.99 16 4 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16 5 C -0.10 -3.67 4.95 30.68 0.15 -3.52 16 6 C -0.06 -2.41 1.93 -10.74 -0.02 -2.43 16 7 H 0.06 2.22 7.94 -2.39 -0.02 2.20 16 8 C 0.03 1.60 0.62 -52.23 -0.03 1.56 16 9 C -0.51 -26.73 7.47 25.60 0.19 -26.54 16 10 H 0.06 3.05 6.21 -2.91 -0.02 3.03 16 11 C 0.02 1.08 5.20 84.65 0.44 1.52 16 12 N -0.85 -49.29 9.24 21.45 0.20 -49.09 16 13 Si 0.94 43.32 29.54 68.60 2.03 45.34 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 16 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 17 C 0.03 1.62 7.75 72.28 0.56 2.18 16 18 O -0.35 -19.00 9.42 -148.98 -1.40 -20.40 16 19 C 0.03 1.63 6.85 72.28 0.50 2.13 16 20 C 0.08 2.90 4.45 86.32 0.38 3.28 16 21 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 22 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 23 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.09 1.97 8.09 -2.39 -0.02 1.95 16 25 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.05 1.95 6.22 -2.39 -0.01 1.93 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 31 H 0.06 2.35 7.96 -2.39 -0.02 2.33 16 32 H 0.04 2.33 8.05 -2.39 -0.02 2.31 16 33 H 0.04 2.25 8.04 -2.39 -0.02 2.23 16 34 H 0.05 2.32 8.04 -2.39 -0.02 2.30 16 35 H 0.06 2.25 7.44 -2.39 -0.02 2.23 16 36 H 0.02 0.71 7.75 -2.39 -0.02 0.69 16 Total: -1.00 -59.75 275.79 1.37 -58.37 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.03 Total: 7.68 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.05 Total: -20.87 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -4.33 Total: -70.12 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.40 Total: -20.40 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -59.75 1.37 -58.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259341915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.157 kcal (2) G-P(sol) polarization free energy of solvation -59.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds