Wall clock time and date at job start Mon Mar 30 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47057 * 110.99958 * 2 1 4 4 C 1.53075 * 109.34465 * 181.97052 * 3 2 1 5 5 O 1.43032 * 109.37980 * 303.45185 * 4 3 2 6 6 C 1.43207 * 113.51657 * 58.82274 * 5 4 3 7 7 H 1.08997 * 110.16957 * 180.46620 * 6 5 4 8 8 C 1.53056 * 108.98026 * 60.13125 * 6 5 4 9 9 C 1.52954 * 109.60629 * 181.43539 * 8 6 5 10 10 C 1.53029 * 109.39582 * 60.27039 * 9 8 6 11 11 H 1.09001 * 109.49206 * 59.68673 * 10 9 8 12 12 C 1.50696 * 109.49404 * 179.74041 * 10 9 8 13 13 H 1.07994 * 120.00408 * 84.75114 * 12 10 9 14 14 C 1.37880 * 119.99743 * 264.75792 * 12 10 9 15 15 N 1.31516 * 119.99891 * 178.93169 * 14 12 10 16 16 Si 1.86802 * 120.00083 * 358.93225 * 14 12 10 17 17 H 1.48493 * 109.47283 * 268.19398 * 16 14 12 18 18 H 1.48498 * 109.47249 * 28.19907 * 16 14 12 19 19 H 1.48504 * 109.47242 * 148.19487 * 16 14 12 20 20 C 1.52988 * 109.36208 * 299.71424 * 10 9 8 21 21 C 1.46929 * 110.99591 * 123.48488 * 2 1 3 22 22 H 1.08998 * 109.37510 * 297.05896 * 21 2 1 23 23 H 1.09001 * 109.47350 * 296.51885 * 1 2 3 24 24 H 1.09003 * 109.46845 * 56.51461 * 1 2 3 25 25 H 1.08996 * 109.46973 * 176.51506 * 1 2 3 26 26 H 1.09007 * 109.49060 * 301.92900 * 3 2 1 27 27 H 1.08999 * 109.49187 * 61.98176 * 3 2 1 28 28 H 1.09001 * 109.48241 * 63.42043 * 4 3 2 29 29 H 1.08996 * 109.48626 * 183.45769 * 4 3 2 30 30 H 1.09004 * 109.44561 * 61.40051 * 8 6 5 31 31 H 1.08999 * 109.42984 * 301.46562 * 8 6 5 32 32 H 1.08992 * 109.48322 * 300.29420 * 9 8 6 33 33 H 1.09001 * 109.48414 * 180.24410 * 9 8 6 34 34 H 0.97008 * 119.99483 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.43771 * 179.97438 * 20 10 9 36 36 H 1.08999 * 109.44061 * 299.82426 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9961 1.3729 0.0000 4 6 3.5254 1.3290 -0.0497 5 8 4.0141 0.5581 1.0516 6 6 3.5239 -0.7874 1.0694 7 1 3.9224 -1.3211 1.9322 8 6 3.9586 -1.4926 -0.2176 9 6 3.4119 -2.9210 -0.2298 10 6 1.8834 -2.8808 -0.1690 11 1 1.4994 -2.3320 -1.0290 12 6 1.3421 -4.2871 -0.1874 13 1 1.2643 -4.8478 0.7323 14 6 0.9464 -4.8579 -1.3784 15 7 0.4938 -6.0926 -1.3975 16 14 1.0532 -3.8776 -2.9650 17 1 -0.2352 -3.1787 -3.2027 18 1 2.1461 -2.8781 -2.8567 19 1 1.3338 -4.7970 -4.0970 20 6 1.4453 -2.1820 1.1195 21 6 1.9955 -0.7568 1.1441 22 1 1.6884 -0.2718 2.0706 23 1 -0.3634 0.4588 0.9195 24 1 -0.3633 0.5670 -0.8571 25 1 -0.3633 -1.0257 -0.0625 26 1 1.6190 1.9072 -0.8721 27 1 1.6758 1.8854 0.9071 28 1 3.8457 0.8703 -0.9852 29 1 3.9204 2.3430 0.0122 30 1 5.0471 -1.5202 -0.2664 31 1 3.5703 -0.9480 -1.0783 32 1 3.7959 -3.4646 0.6333 33 1 3.7262 -3.4228 -1.1451 34 1 0.2150 -6.4940 -2.2355 35 1 0.3566 -2.1522 1.1639 36 1 1.8274 -2.7328 1.9789 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259548556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:11 Heat of formation + Delta-G solvation = -46.789959 kcal Electronic energy + Delta-G solvation = -17042.254314 eV Core-core repulsion = 14525.967621 eV Total energy + Delta-G solvation = -2516.286693 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16071 -36.13668 -35.20228 -32.36419 -30.28053 -29.58495 -28.28971 -25.26161 -23.88510 -22.69798 -21.36158 -20.08382 -17.99440 -16.86695 -16.29612 -16.00864 -15.14384 -14.80807 -14.26035 -13.87608 -13.59182 -13.26439 -12.68575 -12.42509 -12.24262 -11.90952 -11.85506 -11.62244 -11.42376 -10.96475 -10.76758 -10.64524 -10.48864 -10.07822 -9.76600 -9.58248 -9.20718 -8.99947 -8.76369 -8.44720 -7.96088 -6.01411 -3.99838 3.34373 3.43154 3.50565 4.04065 4.14481 4.49675 5.05617 5.13195 5.23092 5.29912 5.33783 5.42205 5.63336 5.72087 5.74553 5.78591 5.84983 5.95671 6.09627 6.18988 6.23343 6.28186 6.38882 6.54606 6.66115 6.82079 7.00178 7.11390 7.27881 7.31350 7.43061 7.51569 7.65607 7.88127 8.60525 9.04656 9.63398 11.12092 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.010312 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.339352 B = 2714.721647 C = 2857.910320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.527 5.527 3 C 0.018 3.982 4 C 0.060 3.940 5 O -0.388 6.388 6 C 0.100 3.900 7 H 0.103 0.897 8 C -0.143 4.143 9 C -0.105 4.105 10 C 0.020 3.980 11 H 0.046 0.954 12 C -0.510 4.510 13 H 0.069 0.931 14 C 0.069 3.931 15 N -0.906 5.906 16 Si 0.876 3.124 17 H -0.279 1.279 18 H -0.258 1.258 19 H -0.293 1.293 20 C -0.097 4.097 21 C 0.057 3.943 22 H 0.034 0.966 23 H 0.020 0.980 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.261 0.739 35 H 0.060 0.940 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 14.055 2.232 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.252 5.252 3 C -0.110 4.110 4 C -0.017 4.017 5 O -0.307 6.307 6 C 0.042 3.958 7 H 0.121 0.879 8 C -0.180 4.180 9 C -0.143 4.143 10 C 0.001 3.999 11 H 0.064 0.936 12 C -0.548 4.548 13 H 0.087 0.913 14 C -0.132 4.132 15 N -0.544 5.544 16 Si 0.703 3.297 17 H -0.205 1.205 18 H -0.182 1.182 19 H -0.220 1.220 20 C -0.135 4.135 21 C -0.051 4.051 22 H 0.052 0.948 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.717 13.744 1.824 14.354 hybrid contribution -0.551 0.714 -0.379 0.978 sum 3.166 14.458 1.445 14.871 Atomic orbital electron populations 1.22451 0.87181 1.03505 0.99503 1.62154 1.08035 1.11869 1.43127 1.22774 0.96574 0.90755 1.00904 1.22591 0.92328 0.95701 0.91047 1.88010 1.70847 1.24065 1.47767 1.22360 0.92074 0.81866 0.99453 0.87946 1.22133 0.99186 0.98922 0.97786 1.21731 0.99272 0.92477 1.00843 1.19080 0.91308 0.95670 0.93799 0.93574 1.21093 1.41175 0.97296 0.95228 0.91277 1.25066 0.94565 0.94683 0.98863 1.69925 1.44159 1.13509 1.26833 0.86860 0.79267 0.80264 0.83277 1.20537 1.18219 1.21984 1.21625 1.00019 0.91040 1.00814 1.22315 0.95412 0.96814 0.90609 0.94765 0.96156 0.91931 0.89684 0.90240 0.94688 0.92039 0.89249 0.93159 0.91121 0.93213 0.92923 0.92879 0.92153 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.13 60.07 0.55 0.88 16 2 N -0.53 -8.71 3.44 -234.77 -0.81 -9.52 16 3 C 0.02 0.25 5.66 -3.70 -0.02 0.23 16 4 C 0.06 0.82 6.58 37.20 0.24 1.07 16 5 O -0.39 -6.27 10.65 -35.23 -0.38 -6.65 16 6 C 0.10 1.68 3.30 -26.67 -0.09 1.59 16 7 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 8 C -0.14 -2.56 4.85 -26.73 -0.13 -2.69 16 9 C -0.11 -2.20 5.17 -26.74 -0.14 -2.34 16 10 C 0.02 0.47 1.53 -91.76 -0.14 0.32 16 11 H 0.05 1.10 4.83 -51.93 -0.25 0.85 16 12 C -0.51 -14.06 8.87 -34.44 -0.31 -14.37 16 13 H 0.07 2.08 8.06 -52.49 -0.42 1.65 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.91 -27.75 13.96 55.43 0.77 -26.98 16 16 Si 0.88 21.77 26.93 -169.99 -4.58 17.20 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.26 -6.18 6.63 56.52 0.37 -5.81 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 C -0.10 -1.91 4.26 -26.85 -0.11 -2.03 16 21 C 0.06 0.98 2.11 -67.78 -0.14 0.84 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.46 6.26 -51.93 -0.32 1.14 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.87 6.37 -51.93 -0.33 0.54 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.32 5.94 -51.93 -0.31 1.02 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.17 7.95 -51.93 -0.41 0.75 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.06 1.20 6.34 -51.93 -0.33 0.87 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 268.21 15.07 4.04 4.04 Total: -1.00 -30.07 268.21 -7.10 -37.17 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.77 Total: -0.66 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.38 Total: -14.61 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.03 Total: -36.49 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.38 Total: -6.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.58 Total: 17.20 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.07 -7.10 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.618 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds