Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47057 * 110.99958 * 2 1 4 4 C 1.53075 * 109.34465 * 181.97052 * 3 2 1 5 5 O 1.43032 * 109.37980 * 303.45185 * 4 3 2 6 6 C 1.43207 * 113.51657 * 58.82274 * 5 4 3 7 7 H 1.08997 * 110.16957 * 180.46620 * 6 5 4 8 8 C 1.53056 * 108.98026 * 60.13125 * 6 5 4 9 9 C 1.52954 * 109.60629 * 181.43539 * 8 6 5 10 10 C 1.53029 * 109.39582 * 60.27039 * 9 8 6 11 11 H 1.09001 * 109.49206 * 59.68673 * 10 9 8 12 12 C 1.50696 * 109.49404 * 179.74041 * 10 9 8 13 13 H 1.07994 * 120.00408 * 84.75114 * 12 10 9 14 14 C 1.37880 * 119.99743 * 264.75792 * 12 10 9 15 15 N 1.31516 * 119.99891 * 178.93169 * 14 12 10 16 16 Si 1.86802 * 120.00083 * 358.93225 * 14 12 10 17 17 H 1.48493 * 109.47283 * 268.19398 * 16 14 12 18 18 H 1.48498 * 109.47249 * 28.19907 * 16 14 12 19 19 H 1.48504 * 109.47242 * 148.19487 * 16 14 12 20 20 C 1.52988 * 109.36208 * 299.71424 * 10 9 8 21 21 C 1.46929 * 110.99591 * 123.48488 * 2 1 3 22 22 H 1.08998 * 109.37510 * 297.05896 * 21 2 1 23 23 H 1.09001 * 109.47350 * 296.51885 * 1 2 3 24 24 H 1.09003 * 109.46845 * 56.51461 * 1 2 3 25 25 H 1.08996 * 109.46973 * 176.51506 * 1 2 3 26 26 H 1.09007 * 109.49060 * 301.92900 * 3 2 1 27 27 H 1.08999 * 109.49187 * 61.98176 * 3 2 1 28 28 H 1.09001 * 109.48241 * 63.42043 * 4 3 2 29 29 H 1.08996 * 109.48626 * 183.45769 * 4 3 2 30 30 H 1.09004 * 109.44561 * 61.40051 * 8 6 5 31 31 H 1.08999 * 109.42984 * 301.46562 * 8 6 5 32 32 H 1.08992 * 109.48322 * 300.29420 * 9 8 6 33 33 H 1.09001 * 109.48414 * 180.24410 * 9 8 6 34 34 H 0.97008 * 119.99483 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.43771 * 179.97438 * 20 10 9 36 36 H 1.08999 * 109.44061 * 299.82426 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9961 1.3729 0.0000 4 6 3.5254 1.3290 -0.0497 5 8 4.0141 0.5581 1.0516 6 6 3.5239 -0.7874 1.0694 7 1 3.9224 -1.3211 1.9322 8 6 3.9586 -1.4926 -0.2176 9 6 3.4119 -2.9210 -0.2298 10 6 1.8834 -2.8808 -0.1690 11 1 1.4994 -2.3320 -1.0290 12 6 1.3421 -4.2871 -0.1874 13 1 1.2643 -4.8478 0.7323 14 6 0.9464 -4.8579 -1.3784 15 7 0.4938 -6.0926 -1.3975 16 14 1.0532 -3.8776 -2.9650 17 1 -0.2352 -3.1787 -3.2027 18 1 2.1461 -2.8781 -2.8567 19 1 1.3338 -4.7970 -4.0970 20 6 1.4453 -2.1820 1.1195 21 6 1.9955 -0.7568 1.1441 22 1 1.6884 -0.2718 2.0706 23 1 -0.3634 0.4588 0.9195 24 1 -0.3633 0.5670 -0.8571 25 1 -0.3633 -1.0257 -0.0625 26 1 1.6190 1.9072 -0.8721 27 1 1.6758 1.8854 0.9071 28 1 3.8457 0.8703 -0.9852 29 1 3.9204 2.3430 0.0122 30 1 5.0471 -1.5202 -0.2664 31 1 3.5703 -0.9480 -1.0783 32 1 3.7959 -3.4646 0.6333 33 1 3.7262 -3.4228 -1.1451 34 1 0.2150 -6.4940 -2.2355 35 1 0.3566 -2.1522 1.1639 36 1 1.8274 -2.7328 1.9789 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259548556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -67.000195 kcal Electronic energy + Delta-G solvation = -17043.130695 eV Core-core repulsion = 14525.967621 eV Total energy + Delta-G solvation = -2517.163075 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.46988 -37.58899 -36.54895 -34.42064 -31.63779 -31.25856 -29.55864 -26.94165 -25.36325 -24.00417 -22.80550 -21.71627 -19.47725 -18.90732 -17.59074 -17.23969 -16.62866 -16.26448 -15.70740 -15.34860 -15.00975 -14.77072 -14.40670 -14.15654 -13.53998 -13.37792 -13.29564 -13.06853 -12.78734 -12.71087 -12.44323 -12.10775 -11.96103 -11.74214 -11.49280 -11.19028 -10.96264 -10.67726 -10.62904 -10.28368 -9.19100 -8.24548 -6.26473 1.36317 1.38970 1.52769 2.39497 2.85214 2.98141 3.12490 3.78740 3.92541 4.04411 4.07036 4.33009 4.37568 4.45198 4.51361 4.57285 4.60868 4.65551 4.71294 4.83297 4.84882 4.92593 5.02088 5.04797 5.17499 5.20221 5.37361 5.44488 5.69435 5.76459 5.84213 6.08326 6.15235 6.24524 6.40726 6.82756 7.39910 8.92710 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.010312 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.339352 B = 2714.721647 C = 2857.910320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.020 3.980 4 C 0.054 3.946 5 O -0.393 6.393 6 C 0.103 3.897 7 H 0.108 0.892 8 C -0.131 4.131 9 C -0.103 4.103 10 C 0.024 3.976 11 H 0.042 0.958 12 C -0.510 4.510 13 H 0.028 0.972 14 C 0.010 3.990 15 N -0.956 5.956 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.242 1.242 19 H -0.294 1.294 20 C -0.092 4.092 21 C 0.065 3.935 22 H 0.043 0.957 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.052 0.948 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 17.099 1.687 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.108 4.108 4 C -0.022 4.022 5 O -0.312 6.312 6 C 0.045 3.955 7 H 0.126 0.874 8 C -0.169 4.169 9 C -0.142 4.142 10 C 0.005 3.995 11 H 0.060 0.940 12 C -0.548 4.548 13 H 0.046 0.954 14 C -0.186 4.186 15 N -0.597 5.597 16 Si 0.765 3.235 17 H -0.196 1.196 18 H -0.165 1.165 19 H -0.221 1.221 20 C -0.130 4.130 21 C -0.044 4.044 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.566 16.818 1.291 17.474 hybrid contribution -0.828 -0.254 -0.134 0.877 sum 3.737 16.564 1.157 17.020 Atomic orbital electron populations 1.22413 0.86766 1.02261 1.01032 1.62141 1.08655 1.13758 1.42648 1.22861 0.96522 0.89176 1.02237 1.22855 0.92415 0.96899 0.90069 1.88016 1.70972 1.23387 1.48815 1.22267 0.91645 0.82630 0.98944 0.87389 1.21994 1.00032 0.96395 0.98471 1.21592 0.97727 0.94827 1.00015 1.18996 0.92500 0.92727 0.95264 0.93998 1.21432 1.40444 0.99349 0.93570 0.95354 1.25909 0.94540 0.95575 1.02585 1.70076 1.46247 1.15548 1.27794 0.85827 0.80013 0.79003 0.78676 1.19591 1.16484 1.22065 1.21470 0.99705 0.92960 0.98884 1.22133 0.95725 0.94925 0.91587 0.93911 0.94851 0.90112 0.92364 0.88114 0.94006 0.92434 0.86065 0.91473 0.91423 0.93390 0.94483 0.92863 0.92924 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.13 127.69 1.17 1.82 16 2 N -0.55 -16.47 3.44 -896.68 -3.08 -19.56 16 3 C 0.02 0.46 5.66 86.30 0.49 0.95 16 4 C 0.05 1.24 6.58 72.01 0.47 1.72 16 5 O -0.39 -11.25 10.65 -148.98 -1.59 -12.84 16 6 C 0.10 3.19 3.30 30.63 0.10 3.29 16 7 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 8 C -0.13 -4.39 4.85 30.60 0.15 -4.24 16 9 C -0.10 -4.25 5.17 30.59 0.16 -4.09 16 10 C 0.02 1.09 1.53 -11.54 -0.02 1.07 16 11 H 0.04 1.95 4.83 -2.39 -0.01 1.94 16 12 C -0.51 -28.95 8.87 25.60 0.23 -28.72 16 13 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 14 C 0.01 0.58 5.47 84.66 0.46 1.04 16 15 N -0.96 -60.46 13.96 21.45 0.30 -60.16 16 16 Si 0.94 45.16 26.93 68.60 1.85 47.01 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.24 -10.85 6.63 99.48 0.66 -10.19 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 C -0.09 -3.60 4.26 30.52 0.13 -3.47 16 21 C 0.06 2.10 2.11 44.86 0.09 2.19 16 22 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 1.94 6.26 -2.39 -0.01 1.93 16 26 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.39 6.37 -2.39 -0.02 1.38 16 29 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 2.33 5.94 -2.39 -0.01 2.31 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.61 7.95 -2.39 -0.02 1.59 16 34 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 35 H 0.05 2.10 6.34 -2.39 -0.02 2.09 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -65.32 268.21 1.90 -63.41 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.99 Total: 10.56 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.43 Total: -28.43 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -2.78 Total: -79.71 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.59 Total: -12.84 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.85 Total: 47.01 kcal Total: -65.32 1.90 -63.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.586 kcal (2) G-P(sol) polarization free energy of solvation -65.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds