Wall clock time and date at job start Mon Mar 30 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47102 * 111.00163 * 2 1 4 4 C 1.53056 * 109.47514 * 178.09513 * 3 2 1 5 5 O 1.43111 * 109.49238 * 56.33586 * 4 3 2 6 6 C 1.42878 * 113.44102 * 301.59643 * 5 4 3 7 7 H 1.09000 * 109.45016 * 299.39677 * 6 5 4 8 8 C 1.52882 * 110.16500 * 179.08471 * 6 5 4 9 9 C 1.53090 * 109.22988 * 179.61841 * 8 6 5 10 10 C 1.52952 * 109.68393 * 59.76468 * 9 8 6 11 11 H 1.08998 * 109.39988 * 180.46698 * 10 9 8 12 12 C 1.50693 * 109.43694 * 60.57509 * 10 9 8 13 13 H 1.08002 * 120.00142 * 239.78927 * 12 10 9 14 14 C 1.37878 * 120.00501 * 59.78680 * 12 10 9 15 15 N 1.31518 * 119.99657 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00551 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47131 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47242 * 120.00049 * 16 14 12 19 19 H 1.48501 * 109.47557 * 240.00226 * 16 14 12 20 20 C 1.53081 * 109.67745 * 300.50746 * 10 9 8 21 21 C 1.46871 * 110.99947 * 236.70184 * 2 1 3 22 22 H 1.09004 * 109.39818 * 62.92521 * 21 2 1 23 23 H 1.09001 * 109.47153 * 56.04182 * 1 2 3 24 24 H 1.08991 * 109.47233 * 176.04876 * 1 2 3 25 25 H 1.09008 * 109.46724 * 296.04597 * 1 2 3 26 26 H 1.08993 * 109.47347 * 58.09345 * 3 2 1 27 27 H 1.09000 * 109.46790 * 298.09435 * 3 2 1 28 28 H 1.08999 * 109.46383 * 176.33933 * 4 3 2 29 29 H 1.08996 * 109.46420 * 296.32868 * 4 3 2 30 30 H 1.09006 * 109.51105 * 299.53979 * 8 6 5 31 31 H 1.08997 * 109.51483 * 59.69109 * 8 6 5 32 32 H 1.09002 * 109.43239 * 299.69696 * 9 8 6 33 33 H 1.08999 * 109.43122 * 179.83161 * 9 8 6 34 34 H 0.96998 * 119.99979 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.51694 * 299.84940 * 20 10 9 36 36 H 1.09005 * 109.55197 * 179.72249 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9962 1.3733 0.0000 4 6 3.5255 1.3328 0.0480 5 8 4.0174 0.5593 -1.0510 6 6 3.5243 -0.7816 -1.0681 7 1 3.8316 -1.2930 -0.1559 8 6 4.0769 -1.5309 -2.2807 9 6 3.5434 -2.9658 -2.2728 10 6 2.0151 -2.9476 -2.3312 11 1 1.6400 -3.9709 -2.3170 12 6 1.5698 -2.2679 -3.6003 13 1 0.9545 -1.3817 -3.5510 14 6 1.9480 -2.7773 -4.8245 15 7 2.6969 -3.8567 -4.8846 16 14 1.3954 -1.9352 -6.3976 17 1 0.5670 -0.7499 -6.0600 18 1 2.5863 -1.5019 -7.1717 19 1 0.5942 -2.8839 -7.2119 20 6 1.4622 -2.1855 -1.1242 21 6 1.9953 -0.7528 -1.1461 22 1 1.6882 -0.2652 -2.0713 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0251 -0.0708 25 1 -0.3633 0.4513 0.9234 26 1 1.6194 1.9072 0.8723 27 1 1.6746 1.8859 -0.9066 28 1 3.9179 2.3476 -0.0176 29 1 3.8476 0.8786 0.9849 30 1 3.7587 -1.0293 -3.1947 31 1 5.1657 -1.5471 -2.2336 32 1 3.8656 -3.4675 -1.3603 33 1 3.9331 -3.5023 -3.1379 34 1 2.9632 -4.2149 -5.7458 35 1 1.7804 -2.6784 -0.2055 36 1 0.3732 -2.1696 -1.1704 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259548560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:12 Heat of formation + Delta-G solvation = -49.686901 kcal Electronic energy + Delta-G solvation = -16960.132910 eV Core-core repulsion = 14443.720597 eV Total energy + Delta-G solvation = -2516.412314 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.70008 -36.15545 -35.34720 -32.24555 -29.66356 -29.37335 -27.88037 -25.08433 -23.96910 -22.62494 -20.97893 -19.76531 -18.84201 -16.10801 -15.88752 -15.49909 -15.07145 -14.68370 -14.43499 -13.74022 -13.46088 -12.89804 -12.63935 -12.54367 -12.10669 -11.95368 -11.52758 -11.19677 -10.94719 -10.70604 -10.63398 -10.45683 -10.35895 -10.30856 -9.65774 -9.42443 -9.19132 -8.79507 -8.63939 -8.29828 -7.94041 -5.97786 -4.02482 3.29451 3.38165 3.41311 4.20427 4.29913 4.44534 5.18754 5.32063 5.36928 5.39907 5.47434 5.71714 5.78969 5.84275 5.92137 5.97513 6.09329 6.14899 6.35324 6.42421 6.49555 6.62695 6.66260 6.76553 6.86727 7.05648 7.34969 7.41466 7.48863 7.52476 7.71623 7.73478 7.93553 8.14617 8.45934 8.99185 9.61236 11.07983 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030722 B = 0.009880 C = 0.009433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.179336 B = 2833.186909 C = 2967.627309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.544 5.544 3 C 0.018 3.982 4 C 0.065 3.935 5 O -0.387 6.387 6 C 0.105 3.895 7 H 0.051 0.949 8 C -0.093 4.093 9 C -0.106 4.106 10 C 0.043 3.957 11 H 0.031 0.969 12 C -0.503 4.503 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.884 3.116 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.096 4.096 21 C 0.064 3.936 22 H 0.061 0.939 23 H 0.023 0.977 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.018 0.982 33 H 0.098 0.902 34 H 0.259 0.741 35 H 0.043 0.957 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 7.027 8.472 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.110 4.110 4 C -0.012 4.012 5 O -0.306 6.306 6 C 0.047 3.953 7 H 0.069 0.931 8 C -0.131 4.131 9 C -0.144 4.144 10 C 0.024 3.976 11 H 0.049 0.951 12 C -0.541 4.541 13 H 0.071 0.929 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.713 3.287 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.134 4.134 21 C -0.044 4.044 22 H 0.079 0.921 23 H 0.041 0.959 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.118 6.749 8.631 10.957 hybrid contribution -0.833 0.886 -1.419 1.869 sum -0.952 7.635 7.212 10.546 Atomic orbital electron populations 1.22389 0.87773 1.02563 0.99765 1.62362 1.07802 1.12450 1.44258 1.22749 0.96696 0.90772 1.00832 1.22518 0.92242 0.95972 0.90474 1.87984 1.70092 1.24691 1.47810 1.22254 0.92032 0.81582 0.99391 0.93085 1.21391 0.97902 0.97171 0.96597 1.21534 0.99014 0.93416 1.00461 1.18735 0.91857 0.95556 0.91455 0.95142 1.21148 1.31122 1.11376 0.90469 0.92918 1.24918 0.95184 0.94927 0.98798 1.69858 1.36551 1.21741 1.24702 0.86656 0.78515 0.79584 0.83991 1.19992 1.21030 1.21119 1.21634 0.99309 0.93114 0.99347 1.22269 0.95135 0.95940 0.91048 0.92143 0.95877 0.90502 0.92235 0.90584 0.94412 0.89314 0.93010 0.90474 0.93693 0.96343 0.88349 0.93106 0.93797 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.37 60.07 0.56 0.92 16 2 N -0.54 -9.35 4.83 -234.69 -1.13 -10.48 16 3 C 0.02 0.27 5.65 -3.68 -0.02 0.25 16 4 C 0.07 0.99 7.00 37.19 0.26 1.25 16 5 O -0.39 -7.45 10.52 -35.23 -0.37 -7.82 16 6 C 0.10 2.11 2.63 -26.73 -0.07 2.04 16 7 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 8 C -0.09 -2.03 5.40 -26.75 -0.14 -2.17 16 9 C -0.11 -2.47 5.22 -26.71 -0.14 -2.61 16 10 C 0.04 1.04 2.58 -91.76 -0.24 0.80 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.50 -13.29 6.64 -34.44 -0.23 -13.52 16 13 H 0.05 1.41 6.72 -52.49 -0.35 1.06 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -24.81 11.30 55.43 0.63 -24.18 16 16 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 C -0.10 -2.01 4.45 -26.75 -0.12 -2.13 16 21 C 0.06 1.28 1.58 -67.72 -0.11 1.17 16 22 H 0.06 1.39 6.59 -51.93 -0.34 1.05 16 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 1.19 5.92 -51.93 -0.31 0.88 16 25 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.87 7.26 -51.93 -0.38 1.49 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 2.55 6.03 -51.93 -0.31 2.23 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 1.06 6.25 -51.93 -0.32 0.73 16 LS Contribution 269.95 15.07 4.07 4.07 Total: -1.00 -27.79 269.95 -7.97 -35.76 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.80 Total: -1.12 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.34 Total: -12.40 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.51 Total: -34.66 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.37 Total: -7.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.79 -7.97 -35.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.923 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds