Wall clock time and date at job start Mon Mar 30 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47102 * 111.00163 * 2 1 4 4 C 1.53056 * 109.47514 * 178.09513 * 3 2 1 5 5 O 1.43111 * 109.49238 * 56.33586 * 4 3 2 6 6 C 1.42878 * 113.44102 * 301.59643 * 5 4 3 7 7 H 1.09000 * 109.45016 * 299.39677 * 6 5 4 8 8 C 1.52882 * 110.16500 * 179.08471 * 6 5 4 9 9 C 1.53090 * 109.22988 * 179.61841 * 8 6 5 10 10 C 1.52952 * 109.68393 * 59.76468 * 9 8 6 11 11 H 1.08998 * 109.39988 * 180.46698 * 10 9 8 12 12 C 1.50693 * 109.43694 * 60.57509 * 10 9 8 13 13 H 1.08002 * 120.00142 * 239.78927 * 12 10 9 14 14 C 1.37878 * 120.00501 * 59.78680 * 12 10 9 15 15 N 1.31518 * 119.99657 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00551 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47131 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47242 * 120.00049 * 16 14 12 19 19 H 1.48501 * 109.47557 * 240.00226 * 16 14 12 20 20 C 1.53081 * 109.67745 * 300.50746 * 10 9 8 21 21 C 1.46871 * 110.99947 * 236.70184 * 2 1 3 22 22 H 1.09004 * 109.39818 * 62.92521 * 21 2 1 23 23 H 1.09001 * 109.47153 * 56.04182 * 1 2 3 24 24 H 1.08991 * 109.47233 * 176.04876 * 1 2 3 25 25 H 1.09008 * 109.46724 * 296.04597 * 1 2 3 26 26 H 1.08993 * 109.47347 * 58.09345 * 3 2 1 27 27 H 1.09000 * 109.46790 * 298.09435 * 3 2 1 28 28 H 1.08999 * 109.46383 * 176.33933 * 4 3 2 29 29 H 1.08996 * 109.46420 * 296.32868 * 4 3 2 30 30 H 1.09006 * 109.51105 * 299.53979 * 8 6 5 31 31 H 1.08997 * 109.51483 * 59.69109 * 8 6 5 32 32 H 1.09002 * 109.43239 * 299.69696 * 9 8 6 33 33 H 1.08999 * 109.43122 * 179.83161 * 9 8 6 34 34 H 0.96998 * 119.99979 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.51694 * 299.84940 * 20 10 9 36 36 H 1.09005 * 109.55197 * 179.72249 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9962 1.3733 0.0000 4 6 3.5255 1.3328 0.0480 5 8 4.0174 0.5593 -1.0510 6 6 3.5243 -0.7816 -1.0681 7 1 3.8316 -1.2930 -0.1559 8 6 4.0769 -1.5309 -2.2807 9 6 3.5434 -2.9658 -2.2728 10 6 2.0151 -2.9476 -2.3312 11 1 1.6400 -3.9709 -2.3170 12 6 1.5698 -2.2679 -3.6003 13 1 0.9545 -1.3817 -3.5510 14 6 1.9480 -2.7773 -4.8245 15 7 2.6969 -3.8567 -4.8846 16 14 1.3954 -1.9352 -6.3976 17 1 0.5670 -0.7499 -6.0600 18 1 2.5863 -1.5019 -7.1717 19 1 0.5942 -2.8839 -7.2119 20 6 1.4622 -2.1855 -1.1242 21 6 1.9953 -0.7528 -1.1461 22 1 1.6882 -0.2652 -2.0713 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0251 -0.0708 25 1 -0.3633 0.4513 0.9234 26 1 1.6194 1.9072 0.8723 27 1 1.6746 1.8859 -0.9066 28 1 3.9179 2.3476 -0.0176 29 1 3.8476 0.8786 0.9849 30 1 3.7587 -1.0293 -3.1947 31 1 5.1657 -1.5471 -2.2336 32 1 3.8656 -3.4675 -1.3603 33 1 3.9331 -3.5023 -3.1379 34 1 2.9632 -4.2149 -5.7458 35 1 1.7804 -2.6784 -0.2055 36 1 0.3732 -2.1696 -1.1704 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259548560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:12 Heat of formation + Delta-G solvation = -67.837170 kcal Electronic energy + Delta-G solvation = -16960.919965 eV Core-core repulsion = 14443.720597 eV Total energy + Delta-G solvation = -2517.199369 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20154 -37.83632 -36.76075 -34.20987 -31.17572 -31.09325 -29.33283 -27.00587 -25.45515 -24.08060 -22.63528 -21.22803 -20.71761 -17.91885 -17.56878 -16.85841 -16.65572 -16.38372 -15.93353 -15.31483 -14.89873 -14.53464 -14.29802 -14.29605 -13.64486 -13.33310 -13.10120 -12.93606 -12.79055 -12.42757 -12.33968 -12.08829 -12.03291 -11.86656 -11.46485 -11.12593 -10.95631 -10.68335 -10.36995 -10.25958 -9.33853 -8.05939 -6.15739 1.36561 1.40205 1.48776 2.43197 2.84054 2.94267 3.22336 3.82714 4.02689 4.09199 4.17639 4.28755 4.47214 4.53285 4.62271 4.65927 4.66906 4.70432 4.83084 4.88754 4.90241 4.93037 4.97144 5.06960 5.23200 5.31543 5.57339 5.57963 5.67204 5.88921 6.00608 6.08648 6.18898 6.35018 6.42498 6.92120 7.49961 8.98856 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030722 B = 0.009880 C = 0.009433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.179336 B = 2833.186909 C = 2967.627309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.017 3.983 4 C 0.058 3.942 5 O -0.406 6.406 6 C 0.112 3.888 7 H 0.061 0.939 8 C -0.087 4.087 9 C -0.100 4.100 10 C 0.039 3.961 11 H 0.002 0.998 12 C -0.507 4.507 13 H 0.044 0.956 14 C 0.018 3.982 15 N -0.914 5.914 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.280 1.280 20 C -0.087 4.087 21 C 0.074 3.926 22 H 0.025 0.975 23 H 0.016 0.984 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.026 0.974 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.259 0.741 35 H 0.057 0.943 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 8.566 10.001 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.270 5.270 3 C -0.111 4.111 4 C -0.019 4.019 5 O -0.326 6.326 6 C 0.054 3.946 7 H 0.078 0.922 8 C -0.125 4.125 9 C -0.138 4.138 10 C 0.020 3.980 11 H 0.021 0.979 12 C -0.546 4.546 13 H 0.062 0.938 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.765 3.235 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.206 1.206 20 C -0.125 4.125 21 C -0.034 4.034 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.130 0.870 27 H 0.045 0.955 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.326 8.302 10.171 13.133 hybrid contribution -0.783 0.445 -1.841 2.049 sum -1.109 8.747 8.330 12.130 Atomic orbital electron populations 1.22467 0.86563 1.02424 1.01116 1.62386 1.08950 1.13653 1.41995 1.22887 0.96775 0.89563 1.01921 1.22868 0.92330 0.97007 0.89654 1.87946 1.70513 1.24235 1.49867 1.22015 0.91780 0.82393 0.98374 0.92155 1.21239 0.98626 0.96201 0.96417 1.21371 0.98190 0.94331 0.99946 1.18713 0.92678 0.94281 0.92370 0.97947 1.21331 1.30655 1.10941 0.91630 0.93811 1.25555 0.95487 0.95573 1.01446 1.69976 1.37437 1.22766 1.25197 0.85802 0.78074 0.78717 0.80868 1.19828 1.20888 1.20629 1.21467 0.99294 0.93595 0.98104 1.21977 0.95319 0.95296 0.90832 0.95700 0.96554 0.91197 0.89043 0.87005 0.95539 0.86260 0.91715 0.93559 0.92473 0.94559 0.91296 0.93151 0.92468 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.37 127.69 1.20 1.81 16 2 N -0.55 -17.38 4.83 -896.43 -4.33 -21.71 16 3 C 0.02 0.44 5.65 86.28 0.49 0.93 16 4 C 0.06 1.55 7.00 72.00 0.50 2.05 16 5 O -0.41 -14.89 10.52 -148.98 -1.57 -16.46 16 6 C 0.11 4.37 2.63 30.60 0.08 4.46 16 7 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 8 C -0.09 -3.81 5.40 30.58 0.17 -3.64 16 9 C -0.10 -4.73 5.22 30.61 0.16 -4.57 16 10 C 0.04 1.90 2.58 -11.53 -0.03 1.87 16 11 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 12 C -0.51 -27.44 6.64 25.60 0.17 -27.27 16 13 H 0.04 2.40 6.72 -2.91 -0.02 2.38 16 14 C 0.02 0.98 5.30 84.65 0.45 1.43 16 15 N -0.91 -52.18 11.30 21.45 0.24 -51.94 16 16 Si 0.94 44.13 29.54 68.60 2.03 46.16 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 C -0.09 -3.58 4.45 30.59 0.14 -3.45 16 21 C 0.07 2.92 1.58 44.93 0.07 2.99 16 22 H 0.03 1.16 6.59 -2.38 -0.02 1.14 16 23 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.07 2.04 5.92 -2.39 -0.01 2.03 16 25 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 2.29 7.26 -2.38 -0.02 2.28 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 3.67 6.03 -2.39 -0.01 3.65 16 34 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 2.16 6.25 -2.38 -0.01 2.15 16 Total: -1.00 -60.02 269.95 0.80 -59.22 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.04 Total: 8.12 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.39 Total: -23.38 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -4.09 Total: -73.65 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.57 Total: -16.46 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -60.02 0.80 -59.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.622 kcal (2) G-P(sol) polarization free energy of solvation -60.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds