Wall clock time and date at job start Mon Mar 30 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47107 * 110.99787 * 2 1 4 4 C 1.53045 * 109.47610 * 178.09252 * 3 2 1 5 5 O 1.43115 * 109.49393 * 56.32963 * 4 3 2 6 6 C 1.42865 * 113.44543 * 301.60507 * 5 4 3 7 7 H 1.09004 * 109.45016 * 299.45047 * 6 5 4 8 8 C 1.52893 * 110.15994 * 179.06921 * 6 5 4 9 9 C 1.53085 * 109.22980 * 179.61974 * 8 6 5 10 10 C 1.52953 * 109.68825 * 59.76024 * 9 8 6 11 11 H 1.08998 * 109.43585 * 60.57774 * 10 9 8 12 12 C 1.50701 * 109.43599 * 180.45103 * 10 9 8 13 13 H 1.07994 * 120.00233 * 119.99581 * 12 10 9 14 14 C 1.37882 * 119.99855 * 299.99712 * 12 10 9 15 15 N 1.31511 * 120.00215 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99824 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47008 * 60.00356 * 16 14 12 18 18 H 1.48501 * 109.47033 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47468 * 300.00032 * 16 14 12 20 20 C 1.53079 * 109.67573 * 300.51072 * 10 9 8 21 21 C 1.46867 * 111.00299 * 236.70372 * 2 1 3 22 22 H 1.08997 * 109.40079 * 62.92062 * 21 2 1 23 23 H 1.08998 * 109.47036 * 183.30136 * 1 2 3 24 24 H 1.08999 * 109.47339 * 303.30227 * 1 2 3 25 25 H 1.09002 * 109.46984 * 63.29863 * 1 2 3 26 26 H 1.08994 * 109.47206 * 58.08851 * 3 2 1 27 27 H 1.09001 * 109.46912 * 298.08919 * 3 2 1 28 28 H 1.08998 * 109.46667 * 296.32476 * 4 3 2 29 29 H 1.08994 * 109.47056 * 176.33753 * 4 3 2 30 30 H 1.09004 * 109.51043 * 299.53971 * 8 6 5 31 31 H 1.08998 * 109.51516 * 59.69496 * 8 6 5 32 32 H 1.09005 * 109.43370 * 179.82254 * 9 8 6 33 33 H 1.08994 * 109.43491 * 299.68665 * 9 8 6 34 34 H 0.96996 * 120.00710 * 179.97438 * 15 14 12 35 35 H 1.09007 * 109.51331 * 179.70037 * 20 10 9 36 36 H 1.09000 * 109.51766 * 299.84706 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3734 0.0000 4 6 3.5253 1.3330 0.0480 5 8 4.0174 0.5594 -1.0509 6 6 3.5243 -0.7814 -1.0680 7 1 3.8306 -1.2925 -0.1553 8 6 4.0769 -1.5305 -2.2809 9 6 3.5435 -2.9654 -2.2732 10 6 2.0152 -2.9474 -2.3314 11 1 1.6930 -2.4557 -3.2492 12 6 1.4959 -4.3619 -2.3123 13 1 0.8407 -4.6860 -1.5174 14 6 1.8573 -5.2425 -3.3099 15 7 2.6556 -4.8481 -4.2777 16 14 1.2142 -6.9961 -3.2860 17 1 -0.2697 -6.9799 -3.3420 18 1 1.7463 -7.7346 -4.4593 19 1 1.6551 -7.6681 -2.0373 20 6 1.4624 -2.1856 -1.1241 21 6 1.9954 -0.7527 -1.1460 22 1 1.6882 -0.2652 -2.0713 23 1 -0.3633 -1.0259 0.0592 24 1 -0.3634 0.5642 0.8589 25 1 -0.3633 0.4618 -0.9181 26 1 1.6192 1.9072 0.8723 27 1 1.6745 1.8859 -0.9066 28 1 3.8474 0.8789 0.9851 29 1 3.9177 2.3477 -0.0176 30 1 3.7587 -1.0288 -3.1947 31 1 5.1658 -1.5467 -2.2337 32 1 3.9331 -3.5018 -3.1385 33 1 3.8659 -3.4673 -1.3609 34 1 2.9102 -5.4675 -4.9794 35 1 0.3735 -2.1697 -1.1711 36 1 1.7807 -2.6785 -0.2056 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259548563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:14 Heat of formation + Delta-G solvation = -53.647111 kcal Electronic energy + Delta-G solvation = -16612.830257 eV Core-core repulsion = 14096.246216 eV Total energy + Delta-G solvation = -2516.584041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78613 -36.10499 -35.46000 -32.52185 -29.76948 -29.50763 -28.04550 -25.14092 -23.84801 -22.58342 -20.98587 -19.87661 -18.93259 -16.45893 -16.09899 -15.52771 -14.96940 -14.75093 -14.52194 -14.00099 -13.58330 -12.93148 -12.70097 -12.46958 -12.25130 -12.06147 -11.69323 -11.17214 -10.91718 -10.81507 -10.70399 -10.65636 -10.39006 -10.26422 -9.72785 -9.52515 -9.22351 -9.02448 -8.62470 -8.30497 -8.10501 -5.98008 -4.04246 3.32570 3.37412 3.39920 4.07086 4.15307 4.45328 5.07373 5.23502 5.25574 5.32530 5.35852 5.57488 5.67703 5.72534 5.78019 5.87043 5.97313 6.07855 6.15636 6.25174 6.39735 6.48265 6.62690 6.66527 6.79191 7.03918 7.19147 7.26993 7.36966 7.47210 7.58734 7.75300 8.00025 8.14595 8.45763 8.99298 9.60389 11.07955 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043117 B = 0.007877 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.243173 B = 3553.941708 C = 4048.885936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.017 3.983 4 C 0.065 3.935 5 O -0.388 6.388 6 C 0.102 3.898 7 H 0.060 0.940 8 C -0.108 4.108 9 C -0.108 4.108 10 C 0.049 3.951 11 H 0.025 0.975 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.097 4.097 21 C 0.056 3.944 22 H 0.042 0.958 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.051 0.949 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 9.854 6.966 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.111 4.111 4 C -0.012 4.012 5 O -0.307 6.307 6 C 0.044 3.956 7 H 0.078 0.922 8 C -0.146 4.146 9 C -0.146 4.146 10 C 0.030 3.970 11 H 0.043 0.957 12 C -0.551 4.551 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.134 4.134 21 C -0.052 4.052 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.054 9.623 7.092 11.954 hybrid contribution -0.885 -0.528 -0.520 1.154 sum -0.831 9.095 6.572 11.252 Atomic orbital electron populations 1.22391 0.87482 1.02849 0.99710 1.62330 1.07983 1.12413 1.43693 1.22772 0.96731 0.90694 1.00936 1.22539 0.92194 0.95995 0.90514 1.87971 1.70187 1.24600 1.47984 1.22283 0.91716 0.81696 0.99870 0.92183 1.21665 0.99434 0.97963 0.95566 1.21644 0.98895 0.91377 1.02637 1.18670 0.91670 0.94547 0.92081 0.95684 1.21140 1.28978 0.95818 1.09185 0.92732 1.24962 0.95093 0.98485 0.95410 1.69852 1.35018 1.35388 1.12667 0.86683 0.79187 0.84852 0.77416 1.20367 1.21323 1.20298 1.21707 0.99273 0.91181 1.01288 1.22417 0.95562 0.96613 0.90583 0.93969 0.90366 0.92040 0.95880 0.90340 0.94479 0.92778 0.89168 0.92219 0.92677 0.88330 0.94390 0.92942 0.92989 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.16 60.06 0.55 0.89 16 2 N -0.54 -8.82 4.83 -234.70 -1.13 -9.95 16 3 C 0.02 0.24 5.65 -3.69 -0.02 0.22 16 4 C 0.06 0.91 7.00 37.18 0.26 1.17 16 5 O -0.39 -6.95 10.52 -35.23 -0.37 -7.32 16 6 C 0.10 1.94 2.63 -26.72 -0.07 1.86 16 7 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 8 C -0.11 -2.20 5.62 -26.74 -0.15 -2.35 16 9 C -0.11 -2.52 4.97 -26.71 -0.13 -2.65 16 10 C 0.05 1.21 2.10 -91.75 -0.19 1.02 16 11 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 12 C -0.51 -13.93 8.56 -34.44 -0.29 -14.22 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.10 -2.03 4.16 -26.75 -0.11 -2.14 16 21 C 0.06 1.07 1.79 -67.72 -0.12 0.95 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.08 1.17 6.30 -51.93 -0.33 0.84 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.05 1.07 6.41 -51.92 -0.33 0.74 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -28.24 275.13 -8.14 -36.38 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.01 Total: -1.19 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.38 Total: -13.65 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: -0.51 Total: -34.48 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.37 Total: -7.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.24 -8.14 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.269 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds