Wall clock time and date at job start Mon Mar 30 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47107 * 110.99787 * 2 1 4 4 C 1.53045 * 109.47610 * 178.09252 * 3 2 1 5 5 O 1.43115 * 109.49393 * 56.32963 * 4 3 2 6 6 C 1.42865 * 113.44543 * 301.60507 * 5 4 3 7 7 H 1.09004 * 109.45016 * 299.45047 * 6 5 4 8 8 C 1.52893 * 110.15994 * 179.06921 * 6 5 4 9 9 C 1.53085 * 109.22980 * 179.61974 * 8 6 5 10 10 C 1.52953 * 109.68825 * 59.76024 * 9 8 6 11 11 H 1.08998 * 109.43585 * 60.57774 * 10 9 8 12 12 C 1.50701 * 109.43599 * 180.45103 * 10 9 8 13 13 H 1.07994 * 120.00233 * 119.99581 * 12 10 9 14 14 C 1.37882 * 119.99855 * 299.99712 * 12 10 9 15 15 N 1.31511 * 120.00215 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99824 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47008 * 60.00356 * 16 14 12 18 18 H 1.48501 * 109.47033 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47468 * 300.00032 * 16 14 12 20 20 C 1.53079 * 109.67573 * 300.51072 * 10 9 8 21 21 C 1.46867 * 111.00299 * 236.70372 * 2 1 3 22 22 H 1.08997 * 109.40079 * 62.92062 * 21 2 1 23 23 H 1.08998 * 109.47036 * 183.30136 * 1 2 3 24 24 H 1.08999 * 109.47339 * 303.30227 * 1 2 3 25 25 H 1.09002 * 109.46984 * 63.29863 * 1 2 3 26 26 H 1.08994 * 109.47206 * 58.08851 * 3 2 1 27 27 H 1.09001 * 109.46912 * 298.08919 * 3 2 1 28 28 H 1.08998 * 109.46667 * 296.32476 * 4 3 2 29 29 H 1.08994 * 109.47056 * 176.33753 * 4 3 2 30 30 H 1.09004 * 109.51043 * 299.53971 * 8 6 5 31 31 H 1.08998 * 109.51516 * 59.69496 * 8 6 5 32 32 H 1.09005 * 109.43370 * 179.82254 * 9 8 6 33 33 H 1.08994 * 109.43491 * 299.68665 * 9 8 6 34 34 H 0.96996 * 120.00710 * 179.97438 * 15 14 12 35 35 H 1.09007 * 109.51331 * 179.70037 * 20 10 9 36 36 H 1.09000 * 109.51766 * 299.84706 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3734 0.0000 4 6 3.5253 1.3330 0.0480 5 8 4.0174 0.5594 -1.0509 6 6 3.5243 -0.7814 -1.0680 7 1 3.8306 -1.2925 -0.1553 8 6 4.0769 -1.5305 -2.2809 9 6 3.5435 -2.9654 -2.2732 10 6 2.0152 -2.9474 -2.3314 11 1 1.6930 -2.4557 -3.2492 12 6 1.4959 -4.3619 -2.3123 13 1 0.8407 -4.6860 -1.5174 14 6 1.8573 -5.2425 -3.3099 15 7 2.6556 -4.8481 -4.2777 16 14 1.2142 -6.9961 -3.2860 17 1 -0.2697 -6.9799 -3.3420 18 1 1.7463 -7.7346 -4.4593 19 1 1.6551 -7.6681 -2.0373 20 6 1.4624 -2.1856 -1.1241 21 6 1.9954 -0.7527 -1.1460 22 1 1.6882 -0.2652 -2.0713 23 1 -0.3633 -1.0259 0.0592 24 1 -0.3634 0.5642 0.8589 25 1 -0.3633 0.4618 -0.9181 26 1 1.6192 1.9072 0.8723 27 1 1.6745 1.8859 -0.9066 28 1 3.8474 0.8789 0.9851 29 1 3.9177 2.3477 -0.0176 30 1 3.7587 -1.0288 -3.1947 31 1 5.1658 -1.5467 -2.2337 32 1 3.9331 -3.5018 -3.1385 33 1 3.8659 -3.4673 -1.3609 34 1 2.9102 -5.4675 -4.9794 35 1 0.3735 -2.1697 -1.1711 36 1 1.7807 -2.6785 -0.2056 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259548563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:14 Heat of formation + Delta-G solvation = -72.060204 kcal Electronic energy + Delta-G solvation = -16613.628709 eV Core-core repulsion = 14096.246216 eV Total energy + Delta-G solvation = -2517.382493 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.21042 -37.75804 -36.81065 -34.47623 -31.30844 -31.16578 -29.44599 -26.93033 -25.34799 -24.00503 -22.62498 -21.30205 -20.73818 -18.41033 -17.55963 -16.83459 -16.61724 -16.21643 -16.06285 -15.50764 -14.93025 -14.52285 -14.48859 -14.09943 -13.67036 -13.40605 -13.21946 -12.93048 -12.75004 -12.44443 -12.28475 -12.16002 -12.07347 -11.86689 -11.49368 -11.29569 -10.97686 -10.80410 -10.39707 -10.31276 -9.39483 -8.07570 -6.21649 1.43206 1.44209 1.51859 2.44027 2.77394 2.88156 3.19502 3.72514 3.98519 4.02517 4.07416 4.25712 4.42385 4.44146 4.57386 4.58679 4.61947 4.64268 4.73939 4.86008 4.86793 4.87983 4.95681 5.06113 5.13551 5.25331 5.37058 5.56715 5.64859 5.91938 5.99904 6.05708 6.11762 6.29204 6.39167 6.89411 7.46463 8.96986 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043117 B = 0.007877 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.243173 B = 3553.941708 C = 4048.885936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.016 3.984 4 C 0.057 3.943 5 O -0.402 6.402 6 C 0.110 3.890 7 H 0.060 0.940 8 C -0.101 4.101 9 C -0.098 4.098 10 C 0.047 3.953 11 H -0.009 1.009 12 C -0.535 4.535 13 H 0.053 0.947 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.953 3.047 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.084 4.084 21 C 0.066 3.934 22 H 0.023 0.977 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.021 0.979 26 H 0.112 0.888 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.123 0.877 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.261 0.739 35 H 0.052 0.948 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 10.800 8.583 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.111 4.111 4 C -0.020 4.020 5 O -0.322 6.322 6 C 0.053 3.947 7 H 0.078 0.922 8 C -0.140 4.140 9 C -0.136 4.136 10 C 0.028 3.972 11 H 0.009 0.991 12 C -0.573 4.573 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.779 3.221 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.121 4.121 21 C -0.043 4.043 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.039 0.961 26 H 0.130 0.870 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.240 10.588 8.724 13.721 hybrid contribution -0.808 -0.753 -1.005 1.493 sum -1.049 9.835 7.719 12.546 Atomic orbital electron populations 1.22454 0.86301 1.02753 1.00996 1.62328 1.09151 1.13891 1.41676 1.22908 0.96656 0.89270 1.02308 1.22894 0.92418 0.97073 0.89569 1.87938 1.70518 1.23855 1.49860 1.22000 0.91465 0.82633 0.98647 0.92203 1.21499 1.00237 0.96068 0.96146 1.21408 0.98036 0.93201 1.00983 1.18620 0.92586 0.93807 0.92183 0.99086 1.21511 1.29204 0.97226 1.09329 0.92847 1.25732 0.95289 1.02405 0.95079 1.69996 1.35847 1.36608 1.13136 0.85687 0.78731 0.80112 0.77582 1.19765 1.20985 1.19580 1.21471 0.99161 0.92355 0.99161 1.22143 0.95714 0.95395 0.91060 0.95930 0.91475 0.88965 0.96070 0.86955 0.94861 0.91988 0.85895 0.93340 0.91228 0.91327 0.94634 0.92978 0.92938 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.16 127.69 1.17 1.77 16 2 N -0.55 -16.65 4.83 -896.47 -4.33 -20.98 16 3 C 0.02 0.40 5.65 86.28 0.49 0.89 16 4 C 0.06 1.40 7.00 72.00 0.50 1.91 16 5 O -0.40 -13.61 10.52 -148.98 -1.57 -15.18 16 6 C 0.11 4.10 2.63 30.60 0.08 4.18 16 7 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 8 C -0.10 -4.16 5.62 30.59 0.17 -3.99 16 9 C -0.10 -4.73 4.97 30.61 0.15 -4.57 16 10 C 0.05 2.39 2.10 -11.53 -0.02 2.37 16 11 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 12 C -0.53 -29.62 8.56 25.60 0.22 -29.40 16 13 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 14 C 0.01 0.76 5.30 84.66 0.45 1.21 16 15 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 16 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 C -0.08 -3.55 4.16 30.59 0.13 -3.42 16 21 C 0.07 2.46 1.79 44.93 0.08 2.54 16 22 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 23 H 0.07 1.92 6.30 -2.39 -0.02 1.90 16 24 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.07 3.72 6.07 -2.38 -0.01 3.70 16 33 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.05 2.18 6.41 -2.38 -0.02 2.17 16 36 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -61.08 275.13 0.82 -60.26 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.03 Total: 9.62 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.42 Total: -26.52 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -4.09 Total: -73.84 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.57 Total: -15.18 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -61.08 0.82 -60.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.796 kcal (2) G-P(sol) polarization free energy of solvation -61.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds