Wall clock time and date at job start Mon Mar 30 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46776 * 2 1 4 4 C 1.34417 * 124.35484 * 275.22520 * 3 2 1 5 5 O 1.21286 * 124.93892 * 0.41797 * 4 3 2 6 6 C 1.51338 * 110.13385 * 180.41744 * 4 3 2 7 7 C 1.54630 * 104.16743 * 16.20164 * 6 4 3 8 8 H 1.08995 * 110.97488 * 217.11019 * 7 6 4 9 9 C 1.50702 * 110.97050 * 93.38124 * 7 6 4 10 10 H 1.08002 * 120.00335 * 244.49448 * 9 7 6 11 11 C 1.37878 * 120.00079 * 64.49168 * 9 7 6 12 12 N 1.31513 * 120.00435 * 180.02562 * 11 9 7 13 13 Si 1.86803 * 119.99770 * 0.02562 * 11 9 7 14 14 H 1.48510 * 109.46741 * 90.00023 * 13 11 9 15 15 H 1.48501 * 109.47349 * 209.99679 * 13 11 9 16 16 H 1.48501 * 109.47288 * 330.00243 * 13 11 9 17 17 C 1.46767 * 124.34695 * 95.20592 * 3 2 1 18 18 H 1.08997 * 110.32115 * 43.96062 * 17 3 2 19 19 C 1.53005 * 110.24087 * 282.00069 * 17 3 2 20 20 C 1.53008 * 109.47039 * 178.35623 * 19 17 3 21 21 C 1.53000 * 109.47385 * 298.35273 * 19 17 3 22 22 H 1.09000 * 109.46569 * 294.94920 * 1 2 3 23 23 H 1.08999 * 109.47572 * 54.95124 * 1 2 3 24 24 H 1.08997 * 109.47138 * 174.95539 * 1 2 3 25 25 H 1.08999 * 109.46940 * 240.00706 * 2 1 3 26 26 H 1.08990 * 109.47357 * 120.00218 * 2 1 3 27 27 H 1.08993 * 110.48242 * 257.54669 * 6 4 3 28 28 H 1.08996 * 110.52365 * 134.87988 * 6 4 3 29 29 H 0.97002 * 120.00215 * 180.02562 * 12 11 9 30 30 H 1.09001 * 109.47160 * 58.35880 * 19 17 3 31 31 H 1.08997 * 109.46942 * 65.13896 * 20 19 17 32 32 H 1.08997 * 109.47241 * 185.14285 * 20 19 17 33 33 H 1.09001 * 109.46699 * 305.14634 * 20 19 17 34 34 H 1.09000 * 109.46531 * 60.00179 * 21 19 17 35 35 H 1.09000 * 109.46942 * 179.97438 * 21 19 17 36 36 H 1.08994 * 109.47157 * 300.00206 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1758 2.1301 -1.1051 5 8 1.9287 1.7626 -2.2342 6 6 2.7063 3.4985 -0.7358 7 6 3.2361 3.3225 0.7062 8 1 3.0415 4.2124 1.3047 9 6 4.7057 2.9884 0.7039 10 1 5.0425 2.0312 1.0738 11 6 5.6202 3.9046 0.2294 12 7 6.9026 3.6129 0.2268 13 14 5.0378 5.5603 -0.4100 14 1 5.0090 6.5396 0.7062 15 1 5.9677 6.0388 -1.4643 16 1 3.6738 5.4190 -0.9798 17 6 2.3979 2.1253 1.2068 18 1 2.9951 1.4965 1.8670 19 6 1.1487 2.6223 1.9371 20 6 1.5628 3.3594 3.2124 21 6 0.3710 3.5752 1.0271 22 1 -0.3632 0.4335 0.9318 23 1 -0.3634 0.5901 -0.8413 24 1 -0.3633 -1.0236 -0.0904 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.9055 4.2374 -0.7604 28 1 3.5150 3.7886 -1.4065 29 1 7.5460 4.2576 -0.1067 30 1 0.5177 1.7724 2.1974 31 1 2.1170 4.2599 2.9478 32 1 0.6729 3.6336 3.7789 33 1 2.1938 2.7096 3.8189 34 1 0.0760 3.0501 0.1187 35 1 -0.5192 3.9289 1.5473 36 1 1.0020 4.4250 0.7670 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259613067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:25 Heat of formation + Delta-G solvation = -40.213920 kcal Electronic energy + Delta-G solvation = -16929.752132 eV Core-core repulsion = 14413.750597 eV Total energy + Delta-G solvation = -2516.001535 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22900 -36.64769 -34.16494 -33.35995 -31.79028 -29.24549 -27.49352 -26.19547 -24.84349 -22.80576 -21.26657 -19.35522 -18.45514 -17.01139 -16.05814 -15.39908 -15.02425 -14.34060 -13.98918 -13.64476 -13.25910 -13.13781 -12.86544 -12.66961 -12.17972 -12.11688 -11.82933 -11.64463 -11.15678 -11.08657 -10.92552 -10.88687 -10.74440 -10.61948 -10.33333 -9.87033 -9.38294 -9.19664 -8.83511 -8.61557 -8.02466 -6.15194 -4.16588 3.23296 3.31952 3.34263 3.41577 3.70364 4.35376 5.04708 5.14412 5.17833 5.24034 5.41297 5.50981 5.60156 5.61748 5.80801 5.89949 5.92154 5.95121 6.09660 6.12042 6.16472 6.19628 6.31745 6.34644 6.38506 6.44677 6.61295 6.69223 6.89148 7.13570 7.33191 7.61979 7.86957 8.39825 8.87068 8.98029 9.45493 10.97381 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.011690 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.836622 B = 2394.698982 C = 2718.953768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 N -0.607 5.607 4 C 0.532 3.468 5 O -0.561 6.561 6 C -0.165 4.165 7 C 0.018 3.982 8 H 0.053 0.947 9 C -0.515 4.515 10 H 0.075 0.925 11 C 0.075 3.925 12 N -0.894 5.894 13 Si 0.855 3.145 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.240 1.240 17 C 0.147 3.853 18 H 0.082 0.918 19 C -0.104 4.104 20 C -0.143 4.143 21 C -0.151 4.151 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.265 0.735 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 -1.504 4.363 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.340 5.340 4 C 0.322 3.678 5 O -0.441 6.441 6 C -0.205 4.205 7 C -0.002 4.002 8 H 0.071 0.929 9 C -0.552 4.552 10 H 0.093 0.907 11 C -0.128 4.128 12 N -0.531 5.531 13 Si 0.682 3.318 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.164 1.164 17 C 0.044 3.956 18 H 0.101 0.899 19 C -0.124 4.124 20 C -0.201 4.201 21 C -0.208 4.208 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.965 -1.720 3.721 12.648 hybrid contribution -0.067 0.810 -0.321 0.874 sum -12.032 -0.910 3.400 12.536 Atomic orbital electron populations 1.22212 0.96594 1.01531 1.02166 1.21184 0.93612 0.82722 1.02436 1.48280 1.64868 1.12539 1.08277 1.21118 0.74987 0.88016 0.83642 1.90596 1.53831 1.77709 1.21967 1.23295 1.01126 0.93567 1.02499 1.20140 0.95767 0.93771 0.90475 0.92923 1.20870 0.87721 1.03647 1.42998 0.90652 1.24974 0.94690 0.98258 0.94885 1.69890 1.01176 1.35794 1.46266 0.87432 0.80585 0.84398 0.79419 1.20357 1.21303 1.16407 1.21849 0.93507 0.94455 0.85812 0.89949 1.21496 0.97037 0.98149 0.95685 1.21805 1.00698 1.01158 0.96436 1.22013 0.99494 0.99852 0.99408 0.92525 0.92450 0.92214 0.90927 0.90801 0.90171 0.88544 0.92509 0.91782 0.91710 0.93335 0.92451 0.93033 0.93482 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.12 1.91 6.61 -4.04 -0.03 1.88 16 3 N -0.61 -11.39 2.23 -164.86 -0.37 -11.76 16 4 C 0.53 11.67 6.93 -10.83 -0.08 11.60 16 5 O -0.56 -13.78 17.67 5.55 0.10 -13.68 16 6 C -0.16 -3.53 3.61 -26.71 -0.10 -3.63 16 7 C 0.02 0.37 1.37 -90.14 -0.12 0.25 16 8 H 0.05 1.07 5.15 -51.93 -0.27 0.81 16 9 C -0.51 -13.51 9.12 -34.44 -0.31 -13.82 16 10 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 11 C 0.07 2.05 5.39 -17.82 -0.10 1.95 16 12 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 13 Si 0.86 19.94 26.01 -169.99 -4.42 15.51 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.24 -5.13 4.61 56.52 0.26 -4.87 16 17 C 0.15 2.66 2.61 -67.01 -0.18 2.49 16 18 H 0.08 1.53 7.76 -51.93 -0.40 1.13 16 19 C -0.10 -1.52 2.93 -90.61 -0.27 -1.78 16 20 C -0.14 -1.92 8.94 37.16 0.33 -1.59 16 21 C -0.15 -2.18 7.61 37.16 0.28 -1.89 16 22 H 0.06 0.69 6.79 -51.93 -0.35 0.34 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 26 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.08 1.54 6.00 -51.93 -0.31 1.23 16 28 H 0.10 2.27 5.12 -51.93 -0.27 2.01 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.06 0.86 6.79 -51.93 -0.35 0.51 16 31 H 0.06 0.94 6.57 -51.93 -0.34 0.60 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.80 6.91 -51.93 -0.36 0.44 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.99 5.29 -51.93 -0.27 0.71 16 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -30.44 273.47 -5.54 -35.98 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.57 Total: 1.93 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.18 Total: -6.36 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.41 Total: -37.50 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.10 Total: -13.68 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.42 Total: 15.51 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.44 -5.54 -35.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.234 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds