Wall clock time and date at job start Mon Mar 30 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48602 * 110.99745 * 2 1 4 4 C 1.54497 * 104.60835 * 158.79961 * 3 2 1 5 5 C 1.53804 * 104.88532 * 336.21049 * 4 3 2 6 6 C 1.48668 * 111.00367 * 115.51421 * 2 1 3 7 7 C 1.52519 * 110.22690 * 119.12088 * 5 4 3 8 8 O 1.43014 * 109.46718 * 65.74138 * 7 5 4 9 9 C 1.42901 * 114.04862 * 60.21688 * 8 7 5 10 10 C 1.53102 * 109.52308 * 298.45343 * 9 8 7 11 11 C 1.52627 * 110.16802 * 241.27454 * 5 4 3 12 12 H 1.08998 * 109.53779 * 173.79348 * 11 5 4 13 13 C 1.50694 * 109.53991 * 53.54508 * 11 5 4 14 14 H 1.07998 * 120.00333 * 359.97438 * 13 11 5 15 15 C 1.37878 * 119.99844 * 180.02562 * 13 11 5 16 16 N 1.31515 * 120.00424 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99906 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47168 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47152 * 120.00124 * 17 15 13 20 20 H 1.48501 * 109.47502 * 239.99643 * 17 15 13 21 21 H 1.09002 * 109.47401 * 59.87358 * 1 2 3 22 22 H 1.09001 * 109.46874 * 299.87370 * 1 2 3 23 23 H 1.09004 * 109.46970 * 179.87504 * 1 2 3 24 24 H 1.09005 * 110.41138 * 277.58099 * 3 2 1 25 25 H 1.08996 * 110.41124 * 39.89398 * 3 2 1 26 26 H 1.09006 * 110.36064 * 95.06075 * 4 3 2 27 27 H 1.08997 * 110.35781 * 217.35378 * 4 3 2 28 28 H 1.09000 * 110.42971 * 320.11350 * 6 2 1 29 29 H 1.08996 * 110.42789 * 82.60681 * 6 2 1 30 30 H 1.09003 * 109.47794 * 185.73965 * 7 5 4 31 31 H 1.08996 * 109.47309 * 305.74753 * 7 5 4 32 32 H 1.08998 * 109.46062 * 58.46606 * 9 8 7 33 33 H 1.08998 * 109.46845 * 178.43690 * 9 8 7 34 34 H 1.08999 * 109.53657 * 177.93021 * 10 9 8 35 35 H 1.08997 * 109.53386 * 298.16254 * 10 9 8 36 36 H 0.97001 * 120.00439 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3873 0.0000 4 6 3.4424 1.2517 0.5406 5 6 3.4354 -0.0487 1.3620 6 6 2.0019 -0.5978 1.2526 7 6 4.4281 -1.0476 0.7763 8 8 5.7573 -0.5413 0.9244 9 6 6.1460 -0.3134 2.2806 10 6 5.2249 0.7369 2.9072 11 6 3.7747 0.2481 2.8202 12 1 3.6596 -0.6592 3.4131 13 6 2.8504 1.3161 3.3454 14 1 2.0953 1.7415 2.7010 15 6 2.9695 1.7511 4.6483 16 7 3.8894 1.2336 5.4329 17 14 1.8243 3.0756 5.2992 18 1 0.8851 3.4892 4.2257 19 1 1.0542 2.5417 6.4513 20 1 2.6225 4.2483 5.7382 21 1 -0.3634 0.5158 -0.8888 22 1 -0.3633 0.5119 0.8911 23 1 -0.3633 -1.0277 -0.0022 24 1 2.0119 1.7906 -1.0127 25 1 1.4060 2.0231 0.6552 26 1 4.1513 1.1755 -0.2839 27 1 3.6901 2.1010 1.1773 28 1 1.4066 -0.2807 2.1088 29 1 2.0155 -1.6852 1.1793 30 1 4.3406 -1.9981 1.3027 31 1 4.2120 -1.1969 -0.2815 32 1 6.0693 -1.2447 2.8417 33 1 7.1755 0.0435 2.3084 34 1 5.4978 0.8841 3.9521 35 1 5.3252 1.6783 2.3671 36 1 3.9734 1.5399 6.3495 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259700065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:41 Heat of formation + Delta-G solvation = -48.590430 kcal Electronic energy + Delta-G solvation = -17026.091221 eV Core-core repulsion = 14509.726454 eV Total energy + Delta-G solvation = -2516.364767 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65709 -36.90918 -33.93868 -31.93556 -30.38858 -29.00890 -26.43757 -25.84252 -23.67609 -22.50397 -21.17651 -20.20977 -17.85626 -16.42625 -15.63424 -15.40111 -14.64358 -14.38686 -14.32837 -13.89082 -13.52536 -12.75310 -12.49700 -12.32366 -12.15688 -11.89491 -11.08698 -11.02161 -10.95794 -10.79595 -10.68520 -10.40225 -10.21826 -10.15747 -10.01412 -9.52185 -9.24555 -8.89142 -8.43488 -8.24771 -7.94498 -6.04434 -4.09062 3.23906 3.33061 3.35395 4.37970 4.62884 4.67372 5.25387 5.36048 5.47445 5.63074 5.74592 5.84497 5.96485 6.00524 6.13246 6.15830 6.21880 6.23772 6.34308 6.35063 6.45486 6.64431 6.69201 6.77007 6.93417 7.02195 7.08226 7.33638 7.47266 7.55256 7.64773 7.89072 7.92625 8.12516 8.38472 8.92853 9.54966 11.01597 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.013940 C = 0.009386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.321422 B = 2008.196839 C = 2982.429299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.098 4.098 5 C -0.085 4.085 6 C 0.046 3.954 7 C 0.081 3.919 8 O -0.394 6.394 9 C 0.057 3.943 10 C -0.142 4.142 11 C 0.062 3.938 12 H 0.025 0.975 13 C -0.504 4.504 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.886 3.114 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.059 0.941 22 H 0.027 0.973 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -2.033 -7.052 7.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.093 4.093 4 C -0.136 4.136 5 C -0.086 4.086 6 C -0.081 4.081 7 C 0.004 3.996 8 O -0.313 6.313 9 C -0.020 4.020 10 C -0.180 4.180 11 C 0.043 3.957 12 H 0.043 0.957 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.714 3.286 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.078 0.922 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.378 -2.286 -7.502 7.963 hybrid contribution -1.186 1.147 1.492 2.225 sum -2.564 -1.139 -6.010 6.633 Atomic orbital electron populations 1.22448 0.89405 1.01335 1.00249 1.65412 1.07082 1.15854 1.36196 1.23122 0.96868 0.89763 0.99527 1.22216 0.94252 0.98790 0.98357 1.21585 0.93287 0.94737 0.98986 1.23098 0.95895 0.98270 0.90862 1.22468 0.82321 0.94698 1.00091 1.87808 1.30441 1.85943 1.27123 1.22726 0.98297 0.98596 0.82365 1.22255 0.96766 0.96486 1.02462 1.18638 0.92476 0.96643 0.87960 0.95697 1.21169 1.16215 1.20688 0.96133 0.92423 1.24950 0.95419 0.96512 0.97023 1.69879 1.33277 1.42776 1.06935 0.86639 0.81009 0.82038 0.78923 1.19956 1.21150 1.21051 0.92196 0.95409 0.91964 0.91653 0.93912 0.92500 0.89837 0.91641 0.91795 0.94540 0.89922 0.94538 0.90891 0.88592 0.93492 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.53 60.07 0.57 0.79 16 2 N -0.52 -9.12 5.66 -238.33 -1.35 -10.47 16 3 C 0.04 0.62 6.19 -2.10 -0.01 0.61 16 4 C -0.10 -1.92 4.93 -25.53 -0.13 -2.05 16 5 C -0.09 -1.72 0.48 -154.06 -0.07 -1.79 16 6 C 0.05 0.88 5.31 -2.37 -0.01 0.87 16 7 C 0.08 1.53 5.19 36.91 0.19 1.73 16 8 O -0.39 -7.94 10.51 -35.23 -0.37 -8.31 16 9 C 0.06 1.13 6.82 37.21 0.25 1.38 16 10 C -0.14 -3.24 4.92 -26.53 -0.13 -3.37 16 11 C 0.06 1.45 1.48 -91.82 -0.14 1.31 16 12 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 13 C -0.50 -12.90 6.28 -34.44 -0.22 -13.12 16 14 H 0.06 1.48 5.83 -52.49 -0.31 1.17 16 15 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 16 N -0.89 -24.46 11.40 55.43 0.63 -23.83 16 17 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.80 7.29 -51.93 -0.38 0.43 16 26 H 0.06 1.07 7.63 -51.93 -0.40 0.68 16 27 H 0.08 1.80 5.90 -51.93 -0.31 1.49 16 28 H 0.07 1.39 6.51 -51.93 -0.34 1.05 16 29 H 0.06 1.14 7.83 -51.93 -0.41 0.73 16 30 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 2.43 6.24 -51.93 -0.32 2.11 16 35 H 0.05 1.09 6.97 -51.93 -0.36 0.73 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 270.48 15.07 4.08 4.08 Total: -1.00 -26.87 270.48 -7.57 -34.43 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.75 Total: 0.45 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 0.21 Total: -12.08 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: -0.72 Total: -34.30 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.37 Total: -8.31 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.87 -7.57 -34.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259700065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.159 kcal (2) G-P(sol) polarization free energy of solvation -26.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds