Wall clock time and date at job start Mon Mar 30 2020 03:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48630 * 111.03530 * 2 1 4 4 C 1.55041 * 103.31220 * 159.41712 * 3 2 1 5 5 C 1.54132 * 102.81530 * 322.99776 * 4 3 2 6 6 C 1.48020 * 111.00142 * 117.40206 * 2 1 3 7 7 C 1.52546 * 110.05064 * 140.75021 * 5 4 3 8 8 O 1.43002 * 109.47140 * 177.88931 * 7 5 4 9 9 C 1.42899 * 114.04250 * 299.76902 * 8 7 5 10 10 C 1.53101 * 109.52512 * 61.56093 * 9 8 7 11 11 C 1.52636 * 110.00721 * 262.65769 * 5 4 3 12 12 H 1.08991 * 109.53535 * 302.52436 * 11 5 4 13 13 C 1.50695 * 109.53430 * 62.76986 * 11 5 4 14 14 H 1.07998 * 120.00378 * 59.22525 * 13 11 5 15 15 C 1.37884 * 120.00051 * 239.22124 * 13 11 5 16 16 N 1.31511 * 119.99870 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00147 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47089 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47111 * 119.99818 * 17 15 13 20 20 H 1.48493 * 109.47257 * 239.99894 * 17 15 13 21 21 H 1.08992 * 109.47151 * 302.59845 * 1 2 3 22 22 H 1.09006 * 109.47255 * 62.60481 * 1 2 3 23 23 H 1.09000 * 109.46775 * 182.59788 * 1 2 3 24 24 H 1.09002 * 110.62437 * 40.96372 * 3 2 1 25 25 H 1.09006 * 110.80465 * 277.95109 * 3 2 1 26 26 H 1.09001 * 110.74162 * 204.67123 * 4 3 2 27 27 H 1.09001 * 110.74604 * 81.33030 * 4 3 2 28 28 H 1.08996 * 109.98428 * 94.86616 * 6 2 1 29 29 H 1.09008 * 109.97605 * 333.61651 * 6 2 1 30 30 H 1.08994 * 109.47135 * 297.89397 * 7 5 4 31 31 H 1.09001 * 109.46411 * 57.89032 * 7 5 4 32 32 H 1.09002 * 109.46335 * 181.57206 * 9 8 7 33 33 H 1.08994 * 109.46580 * 301.54341 * 9 8 7 34 34 H 1.08996 * 109.53382 * 61.83365 * 10 9 8 35 35 H 1.08999 * 109.53404 * 182.06675 * 10 9 8 36 36 H 0.96993 * 120.00152 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0025 1.3872 0.0000 4 6 3.4489 1.2135 0.5304 5 6 3.2933 0.1063 1.5913 6 6 1.9995 -0.6360 1.2268 7 6 4.4845 -0.8449 1.5332 8 8 4.3521 -1.8376 2.5540 9 6 4.3068 -1.3068 3.8800 10 6 3.0872 -0.3925 4.0238 11 6 3.1742 0.7272 2.9806 12 1 4.0501 1.3443 3.1803 13 6 1.9312 1.5765 3.0480 14 1 0.9635 1.1329 2.8662 15 6 2.0294 2.9201 3.3419 16 7 3.2079 3.4604 3.5629 17 14 0.4886 3.9728 3.4262 18 1 -0.7017 3.1318 3.1410 19 1 0.3646 4.5609 4.7841 20 1 0.5778 5.0623 2.4212 21 1 -0.3633 0.5536 0.8657 22 1 -0.3634 0.4729 -0.9125 23 1 -0.3633 -1.0266 0.0466 24 1 1.4213 2.0221 0.6688 25 1 2.0099 1.7992 -1.0092 26 1 3.8067 2.1369 0.9858 27 1 4.1171 0.8916 -0.2684 28 1 2.2141 -1.6878 1.0382 29 1 1.2761 -0.5432 2.0370 30 1 4.5155 -1.3291 0.5573 31 1 5.4056 -0.2834 1.6897 32 1 4.2337 -2.1250 4.5964 33 1 5.2143 -0.7348 4.0734 34 1 2.1774 -0.9706 3.8629 35 1 3.0728 0.0413 5.0236 36 1 3.2769 4.4055 3.7700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259700073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:47 Heat of formation + Delta-G solvation = -48.845447 kcal Electronic energy + Delta-G solvation = -17215.392878 eV Core-core repulsion = 14699.017052 eV Total energy + Delta-G solvation = -2516.375826 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63509 -36.82531 -33.73805 -31.83649 -30.97829 -28.58427 -26.38172 -25.88780 -23.55217 -22.63287 -21.01850 -20.17433 -17.93656 -16.46364 -15.42992 -15.31860 -14.75961 -14.55199 -14.35077 -13.70873 -13.23363 -13.05023 -12.47647 -12.28748 -12.09471 -11.46428 -11.08104 -10.92937 -10.84698 -10.75866 -10.71563 -10.51494 -10.39724 -10.17063 -10.07941 -9.38499 -9.36575 -8.79847 -8.51017 -8.34135 -7.63128 -6.10347 -4.10552 3.20460 3.30398 3.32852 4.34316 4.57865 4.86825 5.18788 5.55713 5.59620 5.70390 5.85499 5.97641 6.03572 6.10149 6.15771 6.17761 6.25171 6.29911 6.33393 6.43708 6.58780 6.65415 6.77137 6.82884 6.97035 6.98438 7.15742 7.19579 7.52209 7.68860 7.73948 7.80407 7.86484 7.92895 8.36483 8.98080 9.50913 10.98487 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.014152 C = 0.010651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.873839 B = 1978.085773 C = 2628.168665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.527 5.527 3 C 0.043 3.957 4 C -0.096 4.096 5 C -0.090 4.090 6 C 0.061 3.939 7 C 0.076 3.924 8 O -0.392 6.392 9 C 0.059 3.941 10 C -0.143 4.143 11 C 0.042 3.958 12 H 0.070 0.930 13 C -0.498 4.498 14 H 0.051 0.949 15 C 0.069 3.931 16 N -0.892 5.892 17 Si 0.879 3.121 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 H 0.029 0.971 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 -4.954 -3.436 6.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.251 5.251 3 C -0.085 4.085 4 C -0.134 4.134 5 C -0.091 4.091 6 C -0.066 4.066 7 C -0.001 4.001 8 O -0.311 6.311 9 C -0.018 4.018 10 C -0.182 4.182 11 C 0.023 3.977 12 H 0.089 0.911 13 C -0.536 4.536 14 H 0.069 0.931 15 C -0.132 4.132 16 N -0.531 5.531 17 Si 0.707 3.293 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.009 -5.259 -3.896 6.544 hybrid contribution -1.238 1.453 0.907 2.113 sum -1.228 -3.806 -2.989 4.993 Atomic orbital electron populations 1.22412 0.89654 1.00768 1.00274 1.64854 1.06841 1.15878 1.37505 1.23191 0.96416 0.89878 0.98996 1.22207 0.95471 0.99419 0.96273 1.21837 0.93375 0.94304 0.99581 1.22718 0.96451 0.97045 0.90430 1.22592 0.97003 0.90097 0.90431 1.87810 1.94595 1.33488 1.15257 1.22629 0.98386 0.97174 0.83566 1.22385 0.96278 0.97942 1.01548 1.18968 0.99776 0.91861 0.87116 0.91137 1.20996 0.92578 0.93007 1.46979 0.93061 1.24911 0.95443 0.98039 0.94853 1.69878 1.22411 1.12445 1.48324 0.86745 0.83965 0.80775 0.77827 1.19848 1.20984 1.20910 0.95211 0.92480 0.92466 0.91726 0.92514 0.89925 0.93458 0.92244 0.92763 0.90169 0.94070 0.90768 0.94147 0.93082 0.92249 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.40 60.06 0.56 0.88 16 2 N -0.53 -10.15 5.56 -238.74 -1.33 -11.48 16 3 C 0.04 0.85 6.12 -1.79 -0.01 0.84 16 4 C -0.10 -1.94 5.81 -25.06 -0.15 -2.09 16 5 C -0.09 -1.85 0.52 -154.05 -0.08 -1.93 16 6 C 0.06 1.23 4.94 -2.92 -0.01 1.22 16 7 C 0.08 1.43 5.18 36.92 0.19 1.62 16 8 O -0.39 -7.63 10.49 -35.23 -0.37 -8.00 16 9 C 0.06 1.09 6.82 37.21 0.25 1.35 16 10 C -0.14 -3.01 5.19 -26.53 -0.14 -3.15 16 11 C 0.04 0.96 1.66 -91.82 -0.15 0.81 16 12 H 0.07 1.84 6.91 -51.93 -0.36 1.48 16 13 C -0.50 -12.52 5.16 -34.44 -0.18 -12.70 16 14 H 0.05 1.33 6.53 -52.49 -0.34 0.99 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -24.33 12.61 55.43 0.70 -23.63 16 17 Si 0.88 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H 0.03 0.55 8.01 -51.93 -0.42 0.14 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 1.45 6.51 -51.93 -0.34 1.11 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.88 7.81 -51.93 -0.41 1.48 16 27 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 28 H 0.06 1.18 7.58 -51.93 -0.39 0.79 16 29 H 0.05 1.19 4.85 -51.92 -0.25 0.94 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 1.08 7.01 -51.93 -0.36 0.71 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 272.27 15.07 4.10 4.10 Total: -1.00 -26.49 272.27 -7.52 -34.01 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.79 Total: 0.94 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 0.19 Total: -11.45 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.63 Total: -35.11 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.37 Total: -8.00 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.49 -7.52 -34.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259700073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.839 kcal (2) G-P(sol) polarization free energy of solvation -26.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds