Wall clock time and date at job start Mon Mar 30 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48630 * 111.03530 * 2 1 4 4 C 1.55041 * 103.31220 * 159.41712 * 3 2 1 5 5 C 1.54132 * 102.81530 * 322.99776 * 4 3 2 6 6 C 1.48020 * 111.00142 * 117.40206 * 2 1 3 7 7 C 1.52546 * 110.05064 * 140.75021 * 5 4 3 8 8 O 1.43002 * 109.47140 * 177.88931 * 7 5 4 9 9 C 1.42899 * 114.04250 * 299.76902 * 8 7 5 10 10 C 1.53101 * 109.52512 * 61.56093 * 9 8 7 11 11 C 1.52636 * 110.00721 * 262.65769 * 5 4 3 12 12 H 1.08991 * 109.53535 * 302.52436 * 11 5 4 13 13 C 1.50695 * 109.53430 * 62.76986 * 11 5 4 14 14 H 1.07998 * 120.00378 * 59.22525 * 13 11 5 15 15 C 1.37884 * 120.00051 * 239.22124 * 13 11 5 16 16 N 1.31511 * 119.99870 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00147 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47089 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47111 * 119.99818 * 17 15 13 20 20 H 1.48493 * 109.47257 * 239.99894 * 17 15 13 21 21 H 1.08992 * 109.47151 * 302.59845 * 1 2 3 22 22 H 1.09006 * 109.47255 * 62.60481 * 1 2 3 23 23 H 1.09000 * 109.46775 * 182.59788 * 1 2 3 24 24 H 1.09002 * 110.62437 * 40.96372 * 3 2 1 25 25 H 1.09006 * 110.80465 * 277.95109 * 3 2 1 26 26 H 1.09001 * 110.74162 * 204.67123 * 4 3 2 27 27 H 1.09001 * 110.74604 * 81.33030 * 4 3 2 28 28 H 1.08996 * 109.98428 * 94.86616 * 6 2 1 29 29 H 1.09008 * 109.97605 * 333.61651 * 6 2 1 30 30 H 1.08994 * 109.47135 * 297.89397 * 7 5 4 31 31 H 1.09001 * 109.46411 * 57.89032 * 7 5 4 32 32 H 1.09002 * 109.46335 * 181.57206 * 9 8 7 33 33 H 1.08994 * 109.46580 * 301.54341 * 9 8 7 34 34 H 1.08996 * 109.53382 * 61.83365 * 10 9 8 35 35 H 1.08999 * 109.53404 * 182.06675 * 10 9 8 36 36 H 0.96993 * 120.00152 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0025 1.3872 0.0000 4 6 3.4489 1.2135 0.5304 5 6 3.2933 0.1063 1.5913 6 6 1.9995 -0.6360 1.2268 7 6 4.4845 -0.8449 1.5332 8 8 4.3521 -1.8376 2.5540 9 6 4.3068 -1.3068 3.8800 10 6 3.0872 -0.3925 4.0238 11 6 3.1742 0.7272 2.9806 12 1 4.0501 1.3443 3.1803 13 6 1.9312 1.5765 3.0480 14 1 0.9635 1.1329 2.8662 15 6 2.0294 2.9201 3.3419 16 7 3.2079 3.4604 3.5629 17 14 0.4886 3.9728 3.4262 18 1 -0.7017 3.1318 3.1410 19 1 0.3646 4.5609 4.7841 20 1 0.5778 5.0623 2.4212 21 1 -0.3633 0.5536 0.8657 22 1 -0.3634 0.4729 -0.9125 23 1 -0.3633 -1.0266 0.0466 24 1 1.4213 2.0221 0.6688 25 1 2.0099 1.7992 -1.0092 26 1 3.8067 2.1369 0.9858 27 1 4.1171 0.8916 -0.2684 28 1 2.2141 -1.6878 1.0382 29 1 1.2761 -0.5432 2.0370 30 1 4.5155 -1.3291 0.5573 31 1 5.4056 -0.2834 1.6897 32 1 4.2337 -2.1250 4.5964 33 1 5.2143 -0.7348 4.0734 34 1 2.1774 -0.9706 3.8629 35 1 3.0728 0.0413 5.0236 36 1 3.2769 4.4055 3.7700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259700073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:46 Heat of formation + Delta-G solvation = -66.115140 kcal Electronic energy + Delta-G solvation = -17216.141748 eV Core-core repulsion = 14699.017052 eV Total energy + Delta-G solvation = -2517.124696 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26385 -38.37004 -35.54316 -33.59161 -32.66506 -30.17578 -28.19724 -27.46452 -25.09731 -24.41753 -22.65696 -21.78977 -19.63367 -18.38254 -17.08863 -16.93255 -16.35942 -16.20731 -16.06751 -15.32361 -14.79422 -14.69639 -14.21417 -13.96131 -13.68284 -13.07512 -12.95102 -12.70198 -12.60743 -12.39867 -12.25743 -12.17728 -12.03959 -11.89948 -11.71080 -11.14977 -11.11660 -10.59978 -10.45172 -10.01898 -9.23139 -8.11588 -6.14730 1.31583 1.37154 1.44110 2.39137 3.08141 3.16604 3.35150 3.95714 4.03719 4.11920 4.32684 4.45131 4.55000 4.60533 4.63317 4.65667 4.68567 4.73498 4.84921 4.94479 4.98004 5.01868 5.13505 5.18014 5.27612 5.34810 5.45915 5.49553 5.67402 5.83746 5.90872 6.10070 6.25060 6.38918 6.41782 6.98316 7.47917 8.97057 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.014152 C = 0.010651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.873839 B = 1978.085773 C = 2628.168665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.523 5.523 3 C 0.045 3.955 4 C -0.093 4.093 5 C -0.090 4.090 6 C 0.069 3.931 7 C 0.078 3.922 8 O -0.394 6.394 9 C 0.064 3.936 10 C -0.140 4.140 11 C 0.040 3.960 12 H 0.037 0.963 13 C -0.490 4.490 14 H 0.041 0.959 15 C 0.027 3.973 16 N -0.922 5.922 17 Si 0.927 3.073 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.281 1.281 21 H 0.009 0.991 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.035 0.965 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.102 0.898 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 -6.225 -4.459 7.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.246 5.246 3 C -0.082 4.082 4 C -0.131 4.131 5 C -0.091 4.091 6 C -0.058 4.058 7 C 0.001 3.999 8 O -0.313 6.313 9 C -0.013 4.013 10 C -0.178 4.178 11 C 0.021 3.979 12 H 0.055 0.945 13 C -0.529 4.529 14 H 0.059 0.941 15 C -0.171 4.171 16 N -0.562 5.562 17 Si 0.754 3.246 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.207 1.207 21 H 0.028 0.972 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.265 -6.538 -4.921 8.188 hybrid contribution -1.176 1.824 1.222 2.490 sum -1.441 -4.715 -3.699 6.163 Atomic orbital electron populations 1.22486 0.88243 1.01910 1.00426 1.64895 1.08157 1.15012 1.36556 1.23129 0.95668 0.89973 0.99457 1.22147 0.96208 0.97985 0.96745 1.21758 0.94706 0.94820 0.97864 1.22602 0.95557 0.97473 0.90213 1.22616 0.96003 0.89856 0.91388 1.87813 1.94460 1.33569 1.15490 1.22641 0.96896 0.97716 0.83997 1.22274 0.97681 0.97709 1.00132 1.18880 0.97323 0.92080 0.89591 0.94495 1.21125 0.92858 0.93246 1.45633 0.94109 1.25437 0.97329 0.99134 0.95220 1.69986 1.23820 1.12483 1.49932 0.85980 0.81512 0.79496 0.77570 1.19673 1.21050 1.20738 0.97220 0.90385 0.90648 0.94692 0.90310 0.93059 0.91010 0.91321 0.94911 0.88026 0.93874 0.87762 0.93977 0.93315 0.93395 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.40 127.69 1.20 1.79 16 2 N -0.52 -19.06 5.56 -909.24 -5.06 -24.12 16 3 C 0.05 1.76 6.12 86.67 0.53 2.29 16 4 C -0.09 -3.69 5.81 31.68 0.18 -3.51 16 5 C -0.09 -3.63 0.52 -51.88 -0.03 -3.65 16 6 C 0.07 2.69 4.94 86.27 0.43 3.12 16 7 C 0.08 2.77 5.18 71.83 0.37 3.15 16 8 O -0.39 -14.32 10.49 -148.98 -1.56 -15.88 16 9 C 0.06 2.25 6.82 72.02 0.49 2.74 16 10 C -0.14 -5.82 5.19 30.72 0.16 -5.66 16 11 C 0.04 1.87 1.66 -11.57 -0.02 1.85 16 12 H 0.04 1.97 6.91 -2.39 -0.02 1.96 16 13 C -0.49 -25.08 5.16 25.60 0.13 -24.94 16 14 H 0.04 2.15 6.53 -2.91 -0.02 2.13 16 15 C 0.03 1.44 5.46 84.66 0.46 1.90 16 16 N -0.92 -51.55 12.61 21.45 0.27 -51.28 16 17 Si 0.93 42.73 29.54 68.60 2.03 44.75 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H 0.01 0.34 8.01 -2.39 -0.02 0.32 16 22 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 24 H 0.03 1.56 6.51 -2.39 -0.02 1.54 16 25 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 26 H 0.05 2.37 7.81 -2.39 -0.02 2.35 16 27 H 0.07 2.48 7.84 -2.39 -0.02 2.46 16 28 H 0.07 2.55 7.58 -2.39 -0.02 2.53 16 29 H 0.03 1.41 4.85 -2.38 -0.01 1.40 16 30 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 2.03 7.01 -2.39 -0.02 2.01 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -56.08 272.27 0.63 -55.45 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.04 Total: 12.01 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 3.91 Total: -20.92 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -4.78 Total: -75.40 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -1.56 Total: -15.88 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -56.08 0.63 -55.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259700073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.667 kcal (2) G-P(sol) polarization free energy of solvation -56.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds