Wall clock time and date at job start Mon Mar 30 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46855 * 110.99987 * 2 1 4 4 C 1.53034 * 109.50431 * 174.11577 * 3 2 1 5 5 C 1.53139 * 109.52937 * 59.04719 * 4 3 2 6 6 H 1.08996 * 109.77970 * 182.77458 * 5 4 3 7 7 O 1.42881 * 109.17672 * 62.49274 * 5 4 3 8 8 C 1.42893 * 114.15144 * 179.53468 * 7 5 4 9 9 C 1.53100 * 109.47278 * 61.11237 * 8 7 5 10 10 C 1.53182 * 109.13149 * 302.44874 * 9 8 7 11 11 H 1.08994 * 109.53919 * 296.97691 * 10 9 8 12 12 C 1.50697 * 109.54152 * 176.80335 * 10 9 8 13 13 H 1.07991 * 120.00449 * 239.89280 * 12 10 9 14 14 C 1.37885 * 119.99686 * 60.17111 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 10 17 17 H 1.48493 * 109.47326 * 90.00142 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99892 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99603 * 16 14 12 20 20 C 1.53128 * 109.18495 * 302.86288 * 5 4 3 21 21 H 1.08997 * 109.55125 * 296.85726 * 20 5 4 22 22 C 1.46839 * 111.00162 * 235.79072 * 2 1 3 23 23 H 1.09004 * 109.47108 * 184.21310 * 1 2 3 24 24 H 1.09005 * 109.47457 * 304.20815 * 1 2 3 25 25 H 1.08993 * 109.47508 * 64.20718 * 1 2 3 26 26 H 1.08999 * 109.45977 * 294.12776 * 3 2 1 27 27 H 1.08996 * 109.46300 * 54.11152 * 3 2 1 28 28 H 1.09000 * 109.49849 * 179.14827 * 4 3 2 29 29 H 1.08999 * 109.50258 * 299.22134 * 4 3 2 30 30 H 1.09004 * 109.47742 * 181.12863 * 8 7 5 31 31 H 1.08995 * 109.48335 * 301.15789 * 8 7 5 32 32 H 1.09002 * 109.60092 * 182.51856 * 9 8 7 33 33 H 1.09003 * 109.46662 * 62.30665 * 9 8 7 34 34 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.45546 * 65.79368 * 22 2 1 36 36 H 1.08993 * 109.44216 * 305.83670 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3338 0.1479 5 6 4.1252 0.5343 -1.0085 6 1 5.2053 0.4634 -0.8807 7 8 3.8283 1.1928 -2.2412 8 6 4.3574 0.5381 -3.3960 9 6 3.7576 -0.8662 -3.5062 10 6 4.0658 -1.6458 -2.2242 11 1 5.1442 -1.7649 -2.1203 12 6 3.4129 -3.0024 -2.2899 13 1 2.6853 -3.2882 -1.5447 14 6 3.7486 -3.8809 -3.2982 15 7 4.6346 -3.5329 -4.2057 16 14 2.9449 -5.5654 -3.3752 17 1 1.7084 -5.4869 -4.1938 18 1 3.8859 -6.5350 -3.9915 19 1 2.6017 -6.0134 -2.0017 20 6 3.5179 -0.8714 -1.0219 21 1 3.7824 -1.3918 -0.1015 22 6 1.9952 -0.7707 -1.1337 23 1 -0.3633 -1.0249 0.0755 24 1 -0.3634 0.5778 0.8499 25 1 -0.3634 0.4471 -0.9252 26 1 1.7332 1.8606 -0.9379 27 1 1.5630 1.9260 0.8326 28 1 3.9099 2.3508 0.1327 29 1 3.7803 0.8568 1.0922 30 1 4.1045 1.1125 -4.2872 31 1 5.4412 0.4635 -3.3069 32 1 4.1932 -1.3838 -4.3609 33 1 2.6780 -0.7909 -3.6362 34 1 4.8705 -4.1508 -4.9152 35 1 1.7319 -0.2709 -2.0659 36 1 1.5635 -1.7714 -1.1237 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259717695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:30 Heat of formation + Delta-G solvation = -52.592295 kcal Electronic energy + Delta-G solvation = -16941.074840 eV Core-core repulsion = 14424.536539 eV Total energy + Delta-G solvation = -2516.538301 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62396 -36.42884 -34.20543 -32.00742 -31.42910 -29.06473 -26.43419 -25.85385 -23.35470 -22.19218 -22.04894 -20.05097 -17.98629 -16.28928 -15.48565 -15.28812 -14.84198 -14.60678 -14.37841 -14.18469 -13.34711 -12.92281 -12.43750 -12.34363 -12.20281 -11.92073 -11.46595 -11.29747 -10.97364 -10.96446 -10.67556 -10.48085 -10.37463 -10.03777 -9.90160 -9.44388 -9.20825 -8.90858 -8.42490 -8.20085 -7.74656 -6.00562 -4.06231 3.29185 3.36372 3.39816 4.39731 4.42369 4.59004 5.28804 5.32496 5.36672 5.53032 5.71886 5.84796 5.86209 5.92576 6.05204 6.12339 6.14012 6.23513 6.25763 6.34478 6.42336 6.45733 6.50775 6.74594 6.86979 6.96741 7.10184 7.37989 7.56738 7.65505 7.69825 7.92731 7.95409 8.15786 8.41675 8.96373 9.58419 11.05229 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.010318 C = 0.008423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.379356 B = 2713.157264 C = 3323.495653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.550 5.550 3 C 0.062 3.938 4 C -0.106 4.106 5 C 0.091 3.909 6 H 0.049 0.951 7 O -0.392 6.392 8 C 0.059 3.941 9 C -0.144 4.144 10 C 0.054 3.946 11 H 0.027 0.973 12 C -0.508 4.508 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.100 4.100 21 H 0.068 0.932 22 C 0.076 3.924 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.019 0.981 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.259 0.741 35 H 0.037 0.963 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 7.836 5.263 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.066 4.066 4 C -0.143 4.143 5 C 0.034 3.966 6 H 0.067 0.933 7 O -0.312 6.312 8 C -0.017 4.017 9 C -0.182 4.182 10 C 0.035 3.965 11 H 0.045 0.955 12 C -0.546 4.546 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.119 4.119 21 H 0.087 0.913 22 C -0.050 4.050 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.287 7.700 5.525 10.031 hybrid contribution -0.506 -0.855 -0.963 1.384 sum -3.793 6.845 4.562 9.058 Atomic orbital electron populations 1.22269 0.88422 1.01742 0.99544 1.62039 1.06703 1.13274 1.45433 1.21920 0.95106 0.89731 0.99861 1.21586 0.95171 0.99921 0.97661 1.22120 0.97378 0.92955 0.84191 0.93290 1.87738 1.78035 1.50920 1.14464 1.22706 0.96748 0.95500 0.86788 1.22267 0.99539 0.92678 1.03677 1.18690 0.96149 0.92999 0.88678 0.95541 1.21183 1.23680 0.98709 1.11024 0.92337 1.24970 0.95015 0.98231 0.95759 1.69869 1.32521 1.35867 1.14833 0.86638 0.79160 0.84266 0.78226 1.20794 1.21311 1.19883 1.21751 0.94370 0.94478 1.01301 0.91324 1.22067 0.95533 0.97567 0.89881 0.91651 0.92269 0.96202 0.94487 0.91950 0.91700 0.90442 0.90933 0.94470 0.88463 0.93704 0.93060 0.94522 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.59 60.06 0.58 1.00 16 2 N -0.55 -9.57 4.91 -242.99 -1.19 -10.77 16 3 C 0.06 0.98 5.33 -3.83 -0.02 0.96 16 4 C -0.11 -1.67 5.80 -26.64 -0.15 -1.82 16 5 C 0.09 1.73 2.90 -26.59 -0.08 1.65 16 6 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 7 O -0.39 -7.83 9.28 -35.23 -0.33 -8.16 16 8 C 0.06 1.18 6.84 37.21 0.25 1.44 16 9 C -0.14 -3.35 4.80 -26.59 -0.13 -3.48 16 10 C 0.05 1.31 1.97 -91.60 -0.18 1.13 16 11 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.51 -13.53 7.84 -34.44 -0.27 -13.80 16 13 H 0.06 1.55 6.51 -52.49 -0.34 1.21 16 14 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 15 N -0.89 -24.97 11.36 55.43 0.63 -24.34 16 16 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 20 C -0.10 -2.11 2.19 -90.47 -0.20 -2.30 16 21 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 22 C 0.08 1.54 4.03 -3.85 -0.02 1.53 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.64 7.77 -51.93 -0.40 0.23 16 27 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.51 6.18 -51.93 -0.32 2.19 16 33 H 0.04 1.07 6.59 -51.93 -0.34 0.73 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.04 0.80 6.11 -51.93 -0.32 0.48 16 36 H 0.08 1.74 6.47 -51.93 -0.34 1.40 16 LS Contribution 270.40 15.07 4.07 4.07 Total: -1.00 -27.69 270.40 -7.99 -35.68 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.84 Total: -0.41 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.31 Total: -12.13 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.56 Total: -35.11 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.33 Total: -8.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.69 -7.99 -35.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.916 kcal (2) G-P(sol) polarization free energy of solvation -27.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds