Wall clock time and date at job start Mon Mar 30 2020 03:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46855 * 110.99987 * 2 1 4 4 C 1.53034 * 109.50431 * 174.11577 * 3 2 1 5 5 C 1.53139 * 109.52937 * 59.04719 * 4 3 2 6 6 H 1.08996 * 109.77970 * 182.77458 * 5 4 3 7 7 O 1.42881 * 109.17672 * 62.49274 * 5 4 3 8 8 C 1.42893 * 114.15144 * 179.53468 * 7 5 4 9 9 C 1.53100 * 109.47278 * 61.11237 * 8 7 5 10 10 C 1.53182 * 109.13149 * 302.44874 * 9 8 7 11 11 H 1.08994 * 109.53919 * 296.97691 * 10 9 8 12 12 C 1.50697 * 109.54152 * 176.80335 * 10 9 8 13 13 H 1.07991 * 120.00449 * 239.89280 * 12 10 9 14 14 C 1.37885 * 119.99686 * 60.17111 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 10 17 17 H 1.48493 * 109.47326 * 90.00142 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99892 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99603 * 16 14 12 20 20 C 1.53128 * 109.18495 * 302.86288 * 5 4 3 21 21 H 1.08997 * 109.55125 * 296.85726 * 20 5 4 22 22 C 1.46839 * 111.00162 * 235.79072 * 2 1 3 23 23 H 1.09004 * 109.47108 * 184.21310 * 1 2 3 24 24 H 1.09005 * 109.47457 * 304.20815 * 1 2 3 25 25 H 1.08993 * 109.47508 * 64.20718 * 1 2 3 26 26 H 1.08999 * 109.45977 * 294.12776 * 3 2 1 27 27 H 1.08996 * 109.46300 * 54.11152 * 3 2 1 28 28 H 1.09000 * 109.49849 * 179.14827 * 4 3 2 29 29 H 1.08999 * 109.50258 * 299.22134 * 4 3 2 30 30 H 1.09004 * 109.47742 * 181.12863 * 8 7 5 31 31 H 1.08995 * 109.48335 * 301.15789 * 8 7 5 32 32 H 1.09002 * 109.60092 * 182.51856 * 9 8 7 33 33 H 1.09003 * 109.46662 * 62.30665 * 9 8 7 34 34 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.45546 * 65.79368 * 22 2 1 36 36 H 1.08993 * 109.44216 * 305.83670 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3338 0.1479 5 6 4.1252 0.5343 -1.0085 6 1 5.2053 0.4634 -0.8807 7 8 3.8283 1.1928 -2.2412 8 6 4.3574 0.5381 -3.3960 9 6 3.7576 -0.8662 -3.5062 10 6 4.0658 -1.6458 -2.2242 11 1 5.1442 -1.7649 -2.1203 12 6 3.4129 -3.0024 -2.2899 13 1 2.6853 -3.2882 -1.5447 14 6 3.7486 -3.8809 -3.2982 15 7 4.6346 -3.5329 -4.2057 16 14 2.9449 -5.5654 -3.3752 17 1 1.7084 -5.4869 -4.1938 18 1 3.8859 -6.5350 -3.9915 19 1 2.6017 -6.0134 -2.0017 20 6 3.5179 -0.8714 -1.0219 21 1 3.7824 -1.3918 -0.1015 22 6 1.9952 -0.7707 -1.1337 23 1 -0.3633 -1.0249 0.0755 24 1 -0.3634 0.5778 0.8499 25 1 -0.3634 0.4471 -0.9252 26 1 1.7332 1.8606 -0.9379 27 1 1.5630 1.9260 0.8326 28 1 3.9099 2.3508 0.1327 29 1 3.7803 0.8568 1.0922 30 1 4.1045 1.1125 -4.2872 31 1 5.4412 0.4635 -3.3069 32 1 4.1932 -1.3838 -4.3609 33 1 2.6780 -0.7909 -3.6362 34 1 4.8705 -4.1508 -4.9152 35 1 1.7319 -0.2709 -2.0659 36 1 1.5635 -1.7714 -1.1237 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259717695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:29 Heat of formation + Delta-G solvation = -70.479273 kcal Electronic energy + Delta-G solvation = -16941.850477 eV Core-core repulsion = 14424.536539 eV Total energy + Delta-G solvation = -2517.313939 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.21204 -37.89399 -36.07956 -33.47951 -33.31504 -30.66035 -28.18133 -27.39203 -25.03721 -23.87165 -23.55107 -21.64201 -19.64484 -18.31356 -17.07093 -16.88421 -16.56204 -16.20622 -15.88286 -15.78229 -14.78679 -14.57091 -14.16512 -14.05459 -13.72006 -13.41592 -13.01266 -12.83403 -12.69907 -12.57759 -12.34558 -12.20336 -11.97898 -11.85786 -11.51460 -11.30589 -10.93530 -10.71922 -10.42377 -10.01459 -9.15464 -8.08666 -6.21181 1.39364 1.41007 1.50467 2.42493 2.93846 3.13847 3.20974 3.91534 4.00464 4.17832 4.25507 4.36899 4.48678 4.54457 4.57470 4.63779 4.68966 4.73124 4.77663 4.96419 5.01284 5.01513 5.03728 5.13716 5.19000 5.24592 5.30350 5.51731 5.62260 5.91654 6.02734 6.21342 6.29522 6.36391 6.45135 6.87617 7.46161 8.95533 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.010318 C = 0.008423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.379356 B = 2713.157264 C = 3323.495653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.061 3.939 4 C -0.100 4.100 5 C 0.088 3.912 6 H 0.050 0.950 7 O -0.391 6.391 8 C 0.066 3.934 9 C -0.134 4.134 10 C 0.051 3.949 11 H -0.005 1.005 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.949 3.051 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.269 1.269 20 C -0.096 4.096 21 H 0.060 0.940 22 C 0.091 3.909 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.018 0.982 26 H 0.024 0.976 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.018 0.982 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 8.953 6.499 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.066 4.066 4 C -0.138 4.138 5 C 0.030 3.970 6 H 0.068 0.932 7 O -0.310 6.310 8 C -0.011 4.011 9 C -0.172 4.172 10 C 0.032 3.968 11 H 0.013 0.987 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.557 5.557 16 Si 0.775 3.225 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.115 4.115 21 H 0.079 0.921 22 C -0.036 4.036 23 H 0.082 0.918 24 H 0.107 0.893 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.151 8.828 6.775 11.877 hybrid contribution -0.240 -1.204 -1.324 1.805 sum -4.392 7.624 5.451 10.350 Atomic orbital electron populations 1.22362 0.86637 1.02330 1.00745 1.62031 1.08411 1.14154 1.43415 1.22027 0.95232 0.88773 1.00595 1.21620 0.95034 1.00783 0.96351 1.22257 0.97647 0.92088 0.85021 0.93184 1.87749 1.78049 1.50601 1.14621 1.22618 0.96614 0.93776 0.88058 1.22057 0.98619 0.94540 1.01969 1.18638 0.94114 0.93139 0.90926 0.98703 1.21479 1.23594 1.00026 1.10870 0.92795 1.25692 0.95618 1.01604 0.95556 1.69996 1.33562 1.36888 1.15264 0.85695 0.78293 0.80225 0.78301 1.20338 1.21019 1.19383 1.21626 0.95186 0.95604 0.99087 0.92124 1.21736 0.94753 0.96815 0.90333 0.91796 0.89318 0.96341 0.95722 0.88633 0.89258 0.89218 0.88584 0.94207 0.91186 0.94902 0.93104 0.96427 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.59 127.69 1.22 1.96 16 2 N -0.56 -18.24 4.91 -922.67 -4.53 -22.77 16 3 C 0.06 1.75 5.33 86.32 0.46 2.21 16 4 C -0.10 -2.86 5.80 30.65 0.18 -2.68 16 5 C 0.09 3.19 2.90 30.68 0.09 3.28 16 6 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 7 O -0.39 -15.05 9.28 -148.98 -1.38 -16.43 16 8 C 0.07 2.61 6.84 72.02 0.49 3.11 16 9 C -0.13 -6.39 4.80 30.69 0.15 -6.25 16 10 C 0.05 2.55 1.97 -11.43 -0.02 2.53 16 11 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 12 C -0.52 -28.53 7.84 25.60 0.20 -28.33 16 13 H 0.05 2.93 6.51 -2.92 -0.02 2.91 16 14 C 0.01 0.76 5.31 84.66 0.45 1.21 16 15 N -0.92 -52.63 11.36 21.45 0.24 -52.39 16 16 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C -0.10 -4.06 2.19 -10.70 -0.02 -4.08 16 21 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 22 C 0.09 3.69 4.03 86.32 0.35 4.04 16 23 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.09 1.89 8.09 -2.38 -0.02 1.87 16 25 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.02 0.78 7.77 -2.39 -0.02 0.76 16 27 H 0.10 2.15 8.08 -2.39 -0.02 2.13 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 3.74 6.18 -2.39 -0.01 3.72 16 33 H 0.03 1.61 6.59 -2.39 -0.02 1.59 16 34 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.02 0.77 6.11 -2.38 -0.01 0.76 16 36 H 0.06 2.57 6.47 -2.39 -0.02 2.56 16 Total: -1.00 -59.79 270.40 0.94 -58.85 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.04 Total: 9.97 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 3.54 Total: -23.00 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -4.29 Total: -75.16 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -1.38 Total: -16.43 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -59.79 0.94 -58.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.631 kcal (2) G-P(sol) polarization free energy of solvation -59.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds