Wall clock time and date at job start Mon Mar 30 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46856 * 111.00078 * 2 1 4 4 C 1.53038 * 109.49836 * 174.10651 * 3 2 1 5 5 C 1.53104 * 109.28534 * 59.22065 * 4 3 2 6 6 H 1.08995 * 109.52983 * 182.46235 * 5 4 3 7 7 O 1.42872 * 109.57830 * 62.28470 * 5 4 3 8 8 C 1.42900 * 114.15164 * 179.26839 * 7 5 4 9 9 C 1.53102 * 109.23388 * 61.48401 * 8 7 5 10 10 C 1.53175 * 108.97001 * 301.90002 * 9 8 7 11 11 H 1.09000 * 109.60941 * 177.24729 * 10 9 8 12 12 C 1.50699 * 109.53819 * 297.45831 * 10 9 8 13 13 H 1.07999 * 120.00803 * 119.58202 * 12 10 9 14 14 C 1.37881 * 119.99889 * 299.58023 * 12 10 9 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.53132 * 109.20016 * 302.40331 * 5 4 3 21 21 H 1.08994 * 109.55408 * 297.14737 * 20 5 4 22 22 C 1.46835 * 111.00231 * 235.79041 * 2 1 3 23 23 H 1.09006 * 109.46738 * 63.95323 * 1 2 3 24 24 H 1.09002 * 109.47445 * 183.95338 * 1 2 3 25 25 H 1.08998 * 109.47260 * 303.95433 * 1 2 3 26 26 H 1.09004 * 109.46629 * 54.10064 * 3 2 1 27 27 H 1.08998 * 109.46594 * 294.11976 * 3 2 1 28 28 H 1.08994 * 109.50494 * 299.27677 * 4 3 2 29 29 H 1.09000 * 109.53164 * 179.17829 * 4 3 2 30 30 H 1.09002 * 109.48305 * 181.13066 * 8 7 5 31 31 H 1.08990 * 109.48434 * 301.15747 * 8 7 5 32 32 H 1.09008 * 109.35337 * 182.20903 * 9 8 7 33 33 H 1.08995 * 109.86775 * 61.90404 * 9 8 7 34 34 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.45184 * 65.78507 * 22 2 1 36 36 H 1.09001 * 109.45460 * 305.84647 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5180 1.3336 0.1481 5 6 4.1196 0.5368 -1.0126 6 1 5.2003 0.4704 -0.8876 7 8 3.8208 1.1902 -2.2475 8 6 4.3532 0.5341 -3.3999 9 6 3.7488 -0.8686 -3.5061 10 6 4.0656 -1.6455 -2.2245 11 1 3.5984 -2.6293 -2.2683 12 6 5.5580 -1.8020 -2.0859 13 1 6.0666 -1.3909 -1.2264 14 6 6.2742 -2.4700 -3.0564 15 7 7.5767 -2.6070 -2.9352 16 14 5.3948 -3.1805 -4.5433 17 1 5.3524 -2.1645 -5.6256 18 1 4.0095 -3.5588 -4.1651 19 1 6.1232 -4.3830 -5.0215 20 6 3.5179 -0.8714 -1.0220 21 1 3.7871 -1.3892 -0.1015 22 6 1.9952 -0.7707 -1.1336 23 1 -0.3633 0.4513 -0.9234 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 1.5629 1.9261 0.8325 27 1 1.7334 1.8606 -0.9380 28 1 3.7802 0.8558 1.0920 29 1 3.9106 2.3503 0.1335 30 1 4.0986 1.1045 -4.2932 31 1 5.4372 0.4642 -3.3101 32 1 4.1830 -1.3852 -4.3621 33 1 2.6684 -0.7978 -3.6316 34 1 8.0806 -3.0766 -3.6181 35 1 1.7318 -0.2710 -2.0658 36 1 1.5635 -1.7715 -1.1239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259717703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:33 Heat of formation + Delta-G solvation = -43.985171 kcal Electronic energy + Delta-G solvation = -17058.729736 eV Core-core repulsion = 14542.564668 eV Total energy + Delta-G solvation = -2516.165068 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79834 -36.63337 -34.12095 -32.08600 -31.78078 -29.42059 -26.97905 -25.52928 -23.24737 -22.70904 -22.25961 -20.03882 -18.13624 -16.32575 -15.64826 -15.45013 -15.12236 -14.76127 -14.60630 -14.06956 -13.62998 -12.94527 -12.70872 -12.53721 -12.23684 -12.08837 -11.85773 -11.52735 -11.37518 -11.27787 -10.75095 -10.48096 -10.15736 -10.07277 -9.77621 -9.60528 -9.29885 -8.94573 -8.61454 -8.37575 -7.91810 -6.11073 -4.09774 3.21972 3.34564 3.36089 4.25231 4.36837 4.54277 5.19215 5.27854 5.28219 5.44419 5.56928 5.72262 5.77185 5.83686 5.94702 5.97165 6.00564 6.05539 6.10765 6.15078 6.23584 6.37259 6.46965 6.51809 6.63823 6.69363 6.86657 6.94973 7.14170 7.34041 7.39982 7.45313 7.74035 8.05291 8.47908 8.92010 9.51317 11.01694 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039060 B = 0.009875 C = 0.009322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.667456 B = 2834.730944 C = 3002.782425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.545 5.545 3 C 0.062 3.938 4 C -0.109 4.109 5 C 0.101 3.899 6 H 0.070 0.930 7 O -0.392 6.392 8 C 0.076 3.924 9 C -0.156 4.156 10 C 0.016 3.984 11 H 0.030 0.970 12 C -0.510 4.510 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.883 3.117 17 H -0.279 1.279 18 H -0.266 1.266 19 H -0.297 1.297 20 C -0.091 4.091 21 H 0.078 0.922 22 C 0.062 3.938 23 H 0.020 0.980 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.038 0.962 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 6.044 2.786 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.066 4.066 4 C -0.147 4.147 5 C 0.043 3.957 6 H 0.088 0.912 7 O -0.311 6.311 8 C 0.000 4.000 9 C -0.193 4.193 10 C -0.004 4.004 11 H 0.048 0.952 12 C -0.548 4.548 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.714 3.286 17 H -0.206 1.206 18 H -0.191 1.191 19 H -0.225 1.225 20 C -0.110 4.110 21 H 0.096 0.904 22 C -0.065 4.065 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.608 5.913 3.133 12.542 hybrid contribution -0.479 -0.387 -1.756 1.861 sum -11.086 5.525 1.377 12.463 Atomic orbital electron populations 1.22300 0.88290 1.01688 0.99826 1.61965 1.06701 1.13843 1.44463 1.21967 0.95574 0.89066 1.00018 1.21640 0.94601 1.00387 0.98024 1.21985 0.99042 0.91193 0.83471 0.91234 1.87675 1.77729 1.51159 1.14570 1.22367 0.98928 0.92118 0.86632 1.22516 0.98376 0.97713 1.00743 1.19214 0.97406 0.93996 0.89763 0.95190 1.20978 0.89597 1.35873 1.08323 0.90642 1.24994 0.94623 0.95454 0.97993 1.69895 1.06131 1.42606 1.35071 0.86902 0.80091 0.78167 0.83469 1.20614 1.19124 1.22457 1.21558 0.92192 0.96497 1.00719 0.90373 1.22193 0.96408 0.97005 0.90931 0.96172 0.91747 0.91930 0.91743 0.94359 0.90249 0.91428 0.91332 0.91522 0.92903 0.93703 0.92657 0.94334 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.59 60.06 0.58 0.93 16 2 N -0.55 -8.61 4.91 -242.98 -1.19 -9.81 16 3 C 0.06 0.93 5.33 -3.83 -0.02 0.91 16 4 C -0.11 -1.73 5.82 -26.66 -0.16 -1.89 16 5 C 0.10 1.96 2.63 -26.61 -0.07 1.89 16 6 H 0.07 1.50 6.90 -51.93 -0.36 1.14 16 7 O -0.39 -7.86 9.27 -35.23 -0.33 -8.19 16 8 C 0.08 1.56 6.61 37.21 0.25 1.81 16 9 C -0.16 -3.36 4.79 -26.59 -0.13 -3.48 16 10 C 0.02 0.36 1.69 -91.61 -0.15 0.20 16 11 H 0.03 0.72 7.19 -51.93 -0.37 0.34 16 12 C -0.51 -13.70 7.38 -34.44 -0.25 -13.95 16 13 H 0.08 2.20 7.16 -52.49 -0.38 1.82 16 14 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 15 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 16 Si 0.88 21.57 24.42 -169.99 -4.15 17.42 16 17 H -0.28 -6.62 6.84 56.52 0.39 -6.23 16 18 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 19 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 20 C -0.09 -1.83 2.12 -90.47 -0.19 -2.02 16 21 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 22 C 0.06 1.10 4.35 -3.86 -0.02 1.09 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.04 0.62 7.76 -51.93 -0.40 0.21 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.51 7.36 -51.93 -0.38 1.13 16 32 H 0.05 1.19 3.30 -51.92 -0.17 1.02 16 33 H 0.04 0.89 6.58 -51.93 -0.34 0.55 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.04 0.72 6.08 -51.93 -0.32 0.40 16 36 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 LS Contribution 262.58 15.07 3.96 3.96 Total: -1.00 -28.81 262.58 -6.91 -35.72 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.70 Total: -0.38 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.27 Total: -12.64 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.42 Total: -35.89 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.33 Total: -8.19 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.15 Total: 17.42 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.81 -6.91 -35.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.269 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds