Wall clock time and date at job start Mon Mar 30 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46856 * 111.00078 * 2 1 4 4 C 1.53038 * 109.49836 * 174.10651 * 3 2 1 5 5 C 1.53104 * 109.28534 * 59.22065 * 4 3 2 6 6 H 1.08995 * 109.52983 * 182.46235 * 5 4 3 7 7 O 1.42872 * 109.57830 * 62.28470 * 5 4 3 8 8 C 1.42900 * 114.15164 * 179.26839 * 7 5 4 9 9 C 1.53102 * 109.23388 * 61.48401 * 8 7 5 10 10 C 1.53175 * 108.97001 * 301.90002 * 9 8 7 11 11 H 1.09000 * 109.60941 * 177.24729 * 10 9 8 12 12 C 1.50699 * 109.53819 * 297.45831 * 10 9 8 13 13 H 1.07999 * 120.00803 * 119.58202 * 12 10 9 14 14 C 1.37881 * 119.99889 * 299.58023 * 12 10 9 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.53132 * 109.20016 * 302.40331 * 5 4 3 21 21 H 1.08994 * 109.55408 * 297.14737 * 20 5 4 22 22 C 1.46835 * 111.00231 * 235.79041 * 2 1 3 23 23 H 1.09006 * 109.46738 * 63.95323 * 1 2 3 24 24 H 1.09002 * 109.47445 * 183.95338 * 1 2 3 25 25 H 1.08998 * 109.47260 * 303.95433 * 1 2 3 26 26 H 1.09004 * 109.46629 * 54.10064 * 3 2 1 27 27 H 1.08998 * 109.46594 * 294.11976 * 3 2 1 28 28 H 1.08994 * 109.50494 * 299.27677 * 4 3 2 29 29 H 1.09000 * 109.53164 * 179.17829 * 4 3 2 30 30 H 1.09002 * 109.48305 * 181.13066 * 8 7 5 31 31 H 1.08990 * 109.48434 * 301.15747 * 8 7 5 32 32 H 1.09008 * 109.35337 * 182.20903 * 9 8 7 33 33 H 1.08995 * 109.86775 * 61.90404 * 9 8 7 34 34 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.45184 * 65.78507 * 22 2 1 36 36 H 1.09001 * 109.45460 * 305.84647 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5180 1.3336 0.1481 5 6 4.1196 0.5368 -1.0126 6 1 5.2003 0.4704 -0.8876 7 8 3.8208 1.1902 -2.2475 8 6 4.3532 0.5341 -3.3999 9 6 3.7488 -0.8686 -3.5061 10 6 4.0656 -1.6455 -2.2245 11 1 3.5984 -2.6293 -2.2683 12 6 5.5580 -1.8020 -2.0859 13 1 6.0666 -1.3909 -1.2264 14 6 6.2742 -2.4700 -3.0564 15 7 7.5767 -2.6070 -2.9352 16 14 5.3948 -3.1805 -4.5433 17 1 5.3524 -2.1645 -5.6256 18 1 4.0095 -3.5588 -4.1651 19 1 6.1232 -4.3830 -5.0215 20 6 3.5179 -0.8714 -1.0220 21 1 3.7871 -1.3892 -0.1015 22 6 1.9952 -0.7707 -1.1336 23 1 -0.3633 0.4513 -0.9234 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 1.5629 1.9261 0.8325 27 1 1.7334 1.8606 -0.9380 28 1 3.7802 0.8558 1.0920 29 1 3.9106 2.3503 0.1335 30 1 4.0986 1.1045 -4.2932 31 1 5.4372 0.4642 -3.3101 32 1 4.1830 -1.3852 -4.3621 33 1 2.6684 -0.7978 -3.6316 34 1 8.0806 -3.0766 -3.6181 35 1 1.7318 -0.2710 -2.0658 36 1 1.5635 -1.7715 -1.1239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259717703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:33 Heat of formation + Delta-G solvation = -64.573020 kcal Electronic energy + Delta-G solvation = -17059.622492 eV Core-core repulsion = 14542.564668 eV Total energy + Delta-G solvation = -2517.057824 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.35145 -38.01156 -35.94407 -33.80131 -33.46476 -30.91849 -28.62547 -26.96833 -25.00090 -24.30734 -23.62905 -21.57911 -19.81639 -18.34273 -17.34617 -16.87643 -16.73269 -16.38675 -15.90280 -15.68928 -15.06287 -14.74336 -14.27578 -14.12295 -13.84313 -13.66410 -13.22735 -13.08301 -12.83273 -12.60016 -12.28934 -12.04874 -11.98571 -11.62655 -11.56666 -11.39278 -11.11985 -10.72734 -10.62891 -10.08702 -9.16447 -8.29110 -6.31497 1.27334 1.34357 1.43913 2.31212 2.91576 3.05930 3.11306 3.87353 3.95857 4.11107 4.20474 4.30838 4.33092 4.38108 4.51750 4.57290 4.65790 4.68192 4.74177 4.81461 4.95098 4.96477 5.02276 5.04838 5.08092 5.14217 5.19817 5.32409 5.39986 5.56399 5.69013 6.14682 6.25112 6.32274 6.41451 6.73462 7.32621 8.87285 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039060 B = 0.009875 C = 0.009322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.667456 B = 2834.730944 C = 3002.782425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.555 5.555 3 C 0.065 3.935 4 C -0.104 4.104 5 C 0.099 3.901 6 H 0.033 0.967 7 O -0.386 6.386 8 C 0.076 3.924 9 C -0.153 4.153 10 C 0.012 3.988 11 H 0.025 0.975 12 C -0.504 4.504 13 H 0.035 0.965 14 C 0.015 3.985 15 N -0.948 5.948 16 Si 0.941 3.059 17 H -0.264 1.264 18 H -0.248 1.248 19 H -0.301 1.301 20 C -0.088 4.088 21 H 0.062 0.938 22 C 0.073 3.927 23 H 0.024 0.976 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.264 0.736 35 H 0.035 0.965 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 6.849 2.435 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.062 4.062 4 C -0.142 4.142 5 C 0.041 3.959 6 H 0.052 0.948 7 O -0.306 6.306 8 C 0.000 4.000 9 C -0.191 4.191 10 C -0.007 4.007 11 H 0.043 0.957 12 C -0.542 4.542 13 H 0.053 0.947 14 C -0.182 4.182 15 N -0.589 5.589 16 Si 0.769 3.231 17 H -0.190 1.190 18 H -0.172 1.172 19 H -0.229 1.229 20 C -0.108 4.108 21 H 0.080 0.920 22 C -0.055 4.055 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.587 6.733 2.795 15.419 hybrid contribution 0.489 -0.606 -1.532 1.718 sum -13.098 6.127 1.263 14.516 Atomic orbital electron populations 1.22386 0.86005 1.02702 1.00965 1.61944 1.08751 1.14065 1.43216 1.21988 0.94402 0.88927 1.00904 1.21641 0.95719 1.00562 0.96277 1.21993 0.97317 0.91870 0.84683 0.94846 1.87688 1.77286 1.51073 1.14522 1.22359 0.97031 0.92549 0.88084 1.22461 0.99977 0.97591 0.99040 1.19185 0.94508 0.94674 0.92322 0.95652 1.21172 0.91881 1.34523 1.06617 0.94709 1.25797 0.95150 0.96110 1.01170 1.70044 1.07973 1.44377 1.36486 0.85946 0.79589 0.77478 0.80128 1.19013 1.17220 1.22856 1.21451 0.94505 0.96198 0.98602 0.91969 1.21979 0.94033 0.97798 0.91676 0.95786 0.91070 0.89796 0.88752 0.95041 0.89807 0.89920 0.88123 0.94779 0.93672 0.91077 0.92679 0.94721 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.59 127.69 1.22 1.81 16 2 N -0.56 -15.81 4.91 -922.65 -4.53 -20.34 16 3 C 0.07 1.75 5.33 86.32 0.46 2.21 16 4 C -0.10 -3.15 5.82 30.64 0.18 -2.97 16 5 C 0.10 3.85 2.63 30.67 0.08 3.93 16 6 H 0.03 1.52 6.90 -2.39 -0.02 1.51 16 7 O -0.39 -15.03 9.27 -148.98 -1.38 -16.41 16 8 C 0.08 3.06 6.61 72.02 0.48 3.53 16 9 C -0.15 -6.32 4.79 30.69 0.15 -6.17 16 10 C 0.01 0.57 1.69 -11.43 -0.02 0.55 16 11 H 0.03 1.19 7.19 -2.39 -0.02 1.17 16 12 C -0.50 -28.05 7.38 25.60 0.19 -27.86 16 13 H 0.03 2.16 7.16 -2.91 -0.02 2.14 16 14 C 0.01 0.84 5.45 84.65 0.46 1.30 16 15 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 16 Si 0.94 44.36 24.42 68.60 1.67 46.03 16 17 H -0.26 -11.75 6.84 99.48 0.68 -11.06 16 18 H -0.25 -10.89 6.53 99.48 0.65 -10.24 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 20 C -0.09 -3.53 2.12 -10.70 -0.02 -3.56 16 21 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 22 C 0.07 2.43 4.35 86.32 0.38 2.80 16 23 H 0.02 0.51 8.14 -2.38 -0.02 0.49 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 26 H 0.09 2.01 8.09 -2.38 -0.02 1.99 16 27 H 0.03 0.90 7.76 -2.39 -0.02 0.88 16 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.03 1.58 7.36 -2.39 -0.02 1.56 16 32 H 0.05 1.94 3.30 -2.38 -0.01 1.93 16 33 H 0.07 2.58 6.58 -2.39 -0.02 2.57 16 34 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.03 1.18 6.08 -2.39 -0.01 1.17 16 36 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 Total: -1.00 -63.28 262.58 0.58 -62.71 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.96 Total: 10.97 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 3.55 Total: -24.42 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -4.23 Total: -78.88 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.38 Total: -16.41 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.67 Total: 46.03 kcal Total: -63.28 0.58 -62.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.867 kcal (2) G-P(sol) polarization free energy of solvation -63.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds