Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21279 * 119.99864 * 2 1 4 4 N 1.34774 * 119.99908 * 180.02562 * 2 1 3 5 5 C 1.46923 * 120.63047 * 5.29281 * 4 2 1 6 6 C 1.53197 * 108.77708 * 126.39337 * 5 4 2 7 7 C 1.53040 * 109.31008 * 54.63380 * 6 5 4 8 8 C 1.53043 * 109.53616 * 298.63498 * 7 6 5 9 9 C 1.46929 * 120.62951 * 185.29184 * 4 2 1 10 10 H 1.09004 * 109.70162 * 113.74887 * 9 4 2 11 11 C 1.53005 * 109.58706 * 353.39570 * 9 4 2 12 12 C 1.52994 * 109.46931 * 180.49762 * 11 9 4 13 13 C 1.50701 * 109.46667 * 175.10936 * 12 11 9 14 14 H 1.07999 * 120.00529 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99740 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00082 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99687 * 180.27916 * 15 13 12 18 18 H 1.48504 * 109.47301 * 269.72187 * 17 15 13 19 19 H 1.48500 * 109.47754 * 29.72200 * 17 15 13 20 20 H 1.48500 * 109.47182 * 149.72648 * 17 15 13 21 21 H 1.08996 * 109.47193 * 264.51290 * 1 2 3 22 22 H 1.08994 * 109.47255 * 24.51468 * 1 2 3 23 23 H 1.09007 * 109.47226 * 144.51568 * 1 2 3 24 24 H 1.09002 * 109.59378 * 6.60219 * 5 4 2 25 25 H 1.09003 * 109.70183 * 246.24645 * 5 4 2 26 26 H 1.08996 * 109.49131 * 294.68137 * 6 5 4 27 27 H 1.08998 * 109.52387 * 174.59997 * 6 5 4 28 28 H 1.09002 * 109.45830 * 178.62226 * 7 6 5 29 29 H 1.08997 * 109.46500 * 58.65909 * 7 6 5 30 30 H 1.09001 * 109.49758 * 301.41552 * 8 7 6 31 31 H 1.09008 * 109.52041 * 181.33719 * 8 7 6 32 32 H 1.09002 * 109.46714 * 60.49945 * 11 9 4 33 33 H 1.09002 * 109.46797 * 300.49981 * 11 9 4 34 34 H 1.09000 * 109.47121 * 55.11841 * 12 11 9 35 35 H 1.08991 * 109.47564 * 295.10995 * 12 11 9 36 36 H 0.96996 * 120.00357 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4650 -2.4448 -0.1177 6 6 2.0663 -3.2423 -1.2793 7 6 3.5754 -3.3845 -1.0680 8 6 4.2222 -1.9976 -1.0481 9 6 3.6454 -1.1861 0.1161 10 1 3.9329 -1.6474 1.0609 11 6 4.1830 0.2453 0.0596 12 6 5.7089 0.2216 0.1688 13 6 6.2467 1.6184 -0.0071 14 1 5.5681 2.4407 -0.1790 15 6 7.6053 1.8464 0.0516 16 7 8.4317 0.8450 0.2605 17 14 8.2714 3.5789 -0.1586 18 1 8.5481 3.8319 -1.5955 19 1 7.2684 4.5579 0.3321 20 1 9.5273 3.7242 0.6203 21 1 -0.3633 -0.0983 1.0229 22 1 -0.3633 0.9350 -0.4264 23 1 -0.3634 -0.8368 -0.5966 24 1 0.4092 -2.2558 -0.3122 25 1 1.5703 -3.0113 0.8076 26 1 1.8779 -2.7183 -2.2163 27 1 1.6095 -4.2312 -1.3173 28 1 4.0020 -3.9725 -1.8806 29 1 3.7635 -3.8865 -0.1190 30 1 4.0135 -1.4853 -1.9873 31 1 5.3000 -2.1002 -0.9213 32 1 3.7685 0.8219 0.8866 33 1 3.8933 0.7051 -0.8853 34 1 6.1186 -0.4257 -0.6066 35 1 5.9972 -0.1580 1.1489 36 1 9.3874 1.0054 0.3021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259946670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = -64.072844 kcal Electronic energy + Delta-G solvation = -16186.928901 eV Core-core repulsion = 13669.892766 eV Total energy + Delta-G solvation = -2517.036135 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.43167 -38.33315 -36.08115 -34.27153 -33.73072 -30.84839 -30.15305 -27.28012 -25.44799 -24.26486 -21.94904 -21.81808 -19.89264 -18.48875 -17.48995 -16.97173 -16.52553 -16.42586 -15.51316 -15.32240 -14.79934 -14.55699 -14.44327 -14.00169 -13.84602 -13.61550 -13.14188 -13.03712 -12.88562 -12.76685 -12.57197 -12.14320 -12.00069 -11.77745 -11.64072 -11.43313 -11.36432 -11.04442 -10.55930 -9.87114 -9.44526 -8.22868 -6.32681 1.33874 1.36329 1.48364 1.75305 2.13738 2.38867 3.08787 3.70053 3.90234 3.91568 4.06678 4.16643 4.31897 4.39730 4.49232 4.59570 4.66894 4.74121 4.82978 4.94155 4.99659 5.04408 5.09252 5.17874 5.18181 5.25671 5.29394 5.46799 5.51401 5.72919 5.78580 5.92024 6.28916 6.61984 6.82544 7.33927 7.37873 8.89045 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.007220 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.785500 B = 3877.384131 C = 4539.761891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.486 3.514 3 O -0.589 6.589 4 N -0.610 5.610 5 C 0.097 3.903 6 C -0.129 4.129 7 C -0.116 4.116 8 C -0.126 4.126 9 C 0.149 3.851 10 H 0.064 0.936 11 C -0.069 4.069 12 C 0.021 3.979 13 C -0.544 4.544 14 H 0.043 0.957 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.963 3.037 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.273 1.273 21 H 0.111 0.889 22 H 0.086 0.914 23 H 0.114 0.886 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.004 0.996 35 H -0.013 1.013 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.657 -11.270 -1.889 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.276 3.724 3 O -0.470 6.470 4 N -0.344 5.344 5 C -0.023 4.023 6 C -0.167 4.167 7 C -0.153 4.153 8 C -0.164 4.164 9 C 0.045 3.955 10 H 0.082 0.918 11 C -0.107 4.107 12 C -0.016 4.016 13 C -0.582 4.582 14 H 0.061 0.939 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.196 1.196 20 H -0.198 1.198 21 H 0.129 0.871 22 H 0.105 0.895 23 H 0.133 0.867 24 H 0.138 0.862 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.005 0.995 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.190 -10.783 -1.862 20.378 hybrid contribution 1.070 1.067 -0.026 1.511 sum -16.120 -9.716 -1.888 18.916 Atomic orbital electron populations 1.22006 0.87938 1.05941 1.06174 1.21860 0.92524 0.82836 0.75144 1.90865 1.70886 1.33911 1.51301 1.48421 1.06335 1.07517 1.72117 1.22186 0.97727 0.82697 0.99727 1.21930 0.94867 1.01754 0.98172 1.21540 0.96369 0.94583 1.02829 1.21921 1.00015 0.97176 0.97315 1.21208 0.79792 0.96334 0.98151 0.91754 1.21689 0.94475 0.94116 1.00456 1.19197 0.92318 0.95422 0.94671 1.21631 0.92400 0.95095 1.49108 0.93893 1.25929 0.97205 1.01653 0.94697 1.70071 1.03271 1.32942 1.50716 0.85484 0.77803 0.79337 0.78656 1.19437 1.19595 1.19783 0.87102 0.89502 0.86728 0.86184 0.89949 0.92203 0.87329 0.90769 0.91082 0.93457 0.92494 0.93867 0.94629 0.97757 0.99467 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.58 71.24 0.68 -2.21 16 2 C 0.49 15.56 7.72 87.66 0.68 16.23 16 3 O -0.59 -26.51 12.50 -3.03 -0.04 -26.55 16 4 N -0.61 -17.83 2.97 -795.01 -2.36 -20.19 16 5 C 0.10 1.63 6.31 86.36 0.55 2.18 16 6 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 7 C -0.12 -2.61 5.88 30.62 0.18 -2.43 16 8 C -0.13 -4.30 4.86 30.67 0.15 -4.15 16 9 C 0.15 5.62 3.02 44.97 0.14 5.75 16 10 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 11 C -0.07 -3.50 3.08 30.59 0.09 -3.40 16 12 C 0.02 1.26 4.76 29.85 0.14 1.40 16 13 C -0.54 -34.88 9.11 25.60 0.23 -34.64 16 14 H 0.04 2.78 7.74 -2.91 -0.02 2.76 16 15 C 0.00 0.17 5.46 84.66 0.46 0.64 16 16 N -0.93 -59.36 13.29 21.45 0.28 -59.08 16 17 Si 0.96 47.89 29.54 68.60 2.03 49.92 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 21 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.11 1.20 6.05 -2.38 -0.01 1.18 16 24 H 0.12 1.16 5.38 -2.39 -0.01 1.15 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.22 6.65 -2.38 -0.02 2.21 16 32 H 0.04 2.35 6.48 -2.39 -0.02 2.33 16 33 H 0.03 1.93 7.01 -2.39 -0.02 1.91 16 34 H 0.00 0.25 6.32 -2.39 -0.02 0.24 16 35 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -80.40 280.83 4.44 -75.96 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.04 Total: 2.51 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.49 Total: -22.56 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -2.08 Total: -79.27 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.04 Total: -26.55 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -80.40 4.44 -75.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.885 kcal (2) G-P(sol) polarization free energy of solvation -80.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds