Wall clock time and date at job start Mon Mar 30 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.49081 * 110.96894 * 2 1 4 4 C 1.54970 * 103.05081 * 200.64757 * 3 2 1 5 5 C 1.54672 * 103.08696 * 37.22047 * 4 3 2 6 6 H 1.08999 * 110.33197 * 96.95732 * 5 4 3 7 7 C 1.50698 * 110.32928 * 219.07966 * 5 4 3 8 8 H 1.08001 * 120.00257 * 84.55403 * 7 5 4 9 9 C 1.37881 * 120.00158 * 264.55146 * 7 5 4 10 10 N 1.31518 * 119.99705 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 120.00261 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46929 * 90.00304 * 11 9 7 13 13 H 1.48499 * 109.47264 * 209.99776 * 11 9 7 14 14 H 1.48495 * 109.47063 * 330.00503 * 11 9 7 15 15 C 1.47575 * 111.00140 * 242.63179 * 2 1 3 16 16 C 1.52849 * 109.93061 * 264.99248 * 15 2 1 17 17 C 1.53158 * 109.15697 * 177.25917 * 16 15 2 18 18 O 1.42899 * 109.37519 * 302.98389 * 17 16 15 19 19 C 1.42909 * 114.19658 * 61.45363 * 18 17 16 20 20 C 1.52846 * 109.92912 * 26.09046 * 15 2 1 21 21 H 1.08997 * 109.46948 * 177.36612 * 1 2 3 22 22 H 1.09004 * 109.47317 * 297.36679 * 1 2 3 23 23 H 1.09000 * 109.46999 * 57.36823 * 1 2 3 24 24 H 1.08991 * 110.86004 * 82.23420 * 3 2 1 25 25 H 1.09000 * 110.67451 * 318.97269 * 3 2 1 26 26 H 1.08995 * 110.72415 * 278.77204 * 4 3 2 27 27 H 1.08999 * 110.72278 * 155.66338 * 4 3 2 28 28 H 0.97002 * 120.00029 * 179.97438 * 10 9 7 29 29 H 1.08997 * 109.52860 * 297.17277 * 16 15 2 30 30 H 1.09003 * 109.52030 * 57.35891 * 16 15 2 31 31 H 1.08999 * 109.49249 * 183.00982 * 17 16 15 32 32 H 1.09002 * 109.50428 * 62.96587 * 17 16 15 33 33 H 1.08999 * 109.49158 * 178.57610 * 19 18 17 34 34 H 1.09003 * 109.50755 * 58.51571 * 19 18 17 35 35 H 1.08994 * 109.52671 * 302.63609 * 20 15 2 36 36 H 1.09000 * 109.52276 * 62.82849 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0025 1.3921 0.0000 4 6 3.4469 1.2133 -0.5323 5 6 3.2918 0.1059 -1.6009 6 1 3.2020 0.5472 -2.5935 7 6 4.4665 -0.8368 -1.5524 8 1 4.4707 -1.6589 -0.8521 9 6 5.5361 -0.6497 -2.4022 10 7 5.5313 0.3518 -3.2547 11 14 6.9926 -1.8177 -2.3416 12 1 6.7627 -2.9447 -3.2808 13 1 8.2268 -1.0907 -2.7335 14 1 7.1462 -2.3462 -0.9624 15 6 1.9979 -0.6333 -1.2235 16 6 2.3018 -2.1075 -0.9575 17 6 2.7841 -2.7633 -2.2548 18 8 1.7921 -2.5933 -3.2693 19 6 1.5167 -1.2298 -3.5966 20 6 0.9799 -0.5083 -2.3567 21 1 -0.3633 -1.0266 -0.0472 22 1 -0.3634 0.4724 0.9127 23 1 -0.3633 0.5542 -0.8655 24 1 2.0129 1.8037 1.0091 25 1 1.4219 2.0267 -0.6694 26 1 4.1146 0.8885 0.2656 27 1 3.8086 2.1370 -0.9840 28 1 6.2839 0.4836 -3.8523 29 1 3.0791 -2.1880 -0.1977 30 1 1.3983 -2.6087 -0.6101 31 1 2.9514 -3.8268 -2.0844 32 1 3.7152 -2.2956 -2.5748 33 1 0.7720 -1.1898 -4.3915 34 1 2.4330 -0.7437 -3.9318 35 1 0.0371 -0.9618 -2.0511 36 1 0.8204 0.5447 -2.5885 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260117076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:37 Heat of formation + Delta-G solvation = -29.860936 kcal Electronic energy + Delta-G solvation = -17379.856900 eV Core-core repulsion = 14864.304304 eV Total energy + Delta-G solvation = -2515.552596 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91390 -36.63916 -33.45605 -31.35175 -30.89994 -30.27423 -26.20525 -25.06801 -23.87698 -22.69503 -21.30655 -20.00131 -17.54859 -16.49999 -15.84281 -15.03635 -14.93615 -14.44745 -13.92703 -13.82279 -13.41435 -12.89951 -12.74795 -12.12865 -11.90093 -11.67290 -11.30889 -11.24584 -10.96517 -10.70792 -10.49023 -10.42338 -10.21024 -9.92352 -9.75253 -9.61343 -8.97032 -8.83225 -8.59874 -8.29601 -7.65616 -6.09962 -4.03780 3.26519 3.34770 3.37348 4.36998 4.66884 4.78581 5.18037 5.50105 5.62274 5.71016 5.79369 5.84763 5.90012 6.05139 6.10731 6.21422 6.26392 6.30890 6.37896 6.39767 6.52188 6.61542 6.65692 6.89519 7.00685 7.05775 7.15834 7.34292 7.39914 7.54609 7.81208 7.83333 7.97098 8.14747 8.39880 8.94293 9.49605 10.99382 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.013125 C = 0.010778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.004775 B = 2132.763443 C = 2597.206443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.514 5.514 3 C 0.031 3.969 4 C -0.112 4.112 5 C 0.041 3.959 6 H 0.061 0.939 7 C -0.501 4.501 8 H 0.069 0.931 9 C 0.061 3.939 10 N -0.890 5.890 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.096 3.904 16 C -0.103 4.103 17 C 0.034 3.966 18 O -0.399 6.399 19 C 0.069 3.931 20 C -0.164 4.164 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.026 0.974 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.261 0.739 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 -0.519 2.405 7.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.236 5.236 3 C -0.096 4.096 4 C -0.151 4.151 5 C 0.021 3.979 6 H 0.080 0.920 7 C -0.539 4.539 8 H 0.087 0.913 9 C -0.141 4.141 10 N -0.528 5.528 11 Si 0.709 3.291 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.196 1.196 15 C 0.007 3.993 16 C -0.142 4.142 17 C -0.042 4.042 18 O -0.318 6.318 19 C -0.008 4.008 20 C -0.203 4.203 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.471 -0.869 2.661 7.050 hybrid contribution 0.479 0.200 -0.502 0.722 sum -5.992 -0.669 2.159 6.404 Atomic orbital electron populations 1.22483 0.90154 1.01019 0.99605 1.64842 1.06190 1.14732 1.37877 1.23342 0.97698 0.89371 0.99227 1.22687 0.92861 0.99760 0.99785 1.19723 0.90199 0.92365 0.95572 0.92047 1.21249 1.01366 1.12329 1.18969 0.91262 1.25005 0.98146 0.95454 0.95464 1.69922 1.31325 1.29521 1.22036 0.86744 0.82532 0.81169 0.78659 1.20378 1.21238 1.19625 1.21781 0.95681 0.95621 0.86239 1.21750 0.99675 0.94052 0.98674 1.23581 0.94287 0.99180 0.87125 1.87692 1.60938 1.25085 1.58111 1.22419 1.00099 0.83183 0.95137 1.22705 0.99437 0.99942 0.98205 0.92092 0.92692 0.95601 0.91803 0.95170 0.91923 0.93029 0.92872 0.90144 0.94701 0.91652 0.86640 0.90975 0.91582 0.92275 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.27 60.07 0.50 0.76 16 2 N -0.51 -9.85 5.18 -223.25 -1.16 -11.01 16 3 C 0.03 0.58 6.59 -1.57 -0.01 0.57 16 4 C -0.11 -2.45 6.59 -24.81 -0.16 -2.61 16 5 C 0.04 0.94 2.06 -90.52 -0.19 0.76 16 6 H 0.06 1.59 5.90 -51.93 -0.31 1.28 16 7 C -0.50 -12.48 4.57 -34.44 -0.16 -12.64 16 8 H 0.07 1.72 5.12 -52.49 -0.27 1.45 16 9 C 0.06 1.59 5.11 -17.82 -0.09 1.50 16 10 N -0.89 -24.29 12.84 55.43 0.71 -23.58 16 11 Si 0.88 20.25 29.54 -169.99 -5.02 15.23 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 C 0.10 1.97 0.59 -131.01 -0.08 1.89 16 16 C -0.10 -2.13 4.75 -26.73 -0.13 -2.26 16 17 C 0.03 0.72 6.21 37.24 0.23 0.95 16 18 O -0.40 -8.48 10.75 -35.23 -0.38 -8.86 16 19 C 0.07 1.37 6.62 37.24 0.25 1.61 16 20 C -0.16 -3.11 3.49 -26.73 -0.09 -3.20 16 21 H 0.06 0.96 7.71 -51.93 -0.40 0.56 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.40 6.35 -51.93 -0.33 0.07 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.03 0.54 7.97 -51.93 -0.41 0.13 16 26 H 0.06 1.42 7.86 -51.93 -0.41 1.01 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.08 1.73 6.23 -51.93 -0.32 1.41 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.12 2.73 4.58 -51.93 -0.24 2.50 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.47 6.82 -51.93 -0.35 1.11 16 35 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 36 H 0.06 1.09 7.83 -51.93 -0.41 0.68 16 LS Contribution 264.33 15.07 3.98 3.98 Total: -1.00 -26.50 264.33 -7.24 -33.74 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.45 Total: 3.16 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.44 Total: -34.59 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.38 Total: -8.86 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.50 -7.24 -33.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.883 kcal (2) G-P(sol) polarization free energy of solvation -26.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds