Wall clock time and date at job start Mon Mar 30 2020 03:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.49081 * 110.96894 * 2 1 4 4 C 1.54970 * 103.05081 * 200.64757 * 3 2 1 5 5 C 1.54672 * 103.08696 * 37.22047 * 4 3 2 6 6 H 1.08999 * 110.33197 * 96.95732 * 5 4 3 7 7 C 1.50698 * 110.32928 * 219.07966 * 5 4 3 8 8 H 1.08001 * 120.00257 * 84.55403 * 7 5 4 9 9 C 1.37881 * 120.00158 * 264.55146 * 7 5 4 10 10 N 1.31518 * 119.99705 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 120.00261 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46929 * 90.00304 * 11 9 7 13 13 H 1.48499 * 109.47264 * 209.99776 * 11 9 7 14 14 H 1.48495 * 109.47063 * 330.00503 * 11 9 7 15 15 C 1.47575 * 111.00140 * 242.63179 * 2 1 3 16 16 C 1.52849 * 109.93061 * 264.99248 * 15 2 1 17 17 C 1.53158 * 109.15697 * 177.25917 * 16 15 2 18 18 O 1.42899 * 109.37519 * 302.98389 * 17 16 15 19 19 C 1.42909 * 114.19658 * 61.45363 * 18 17 16 20 20 C 1.52846 * 109.92912 * 26.09046 * 15 2 1 21 21 H 1.08997 * 109.46948 * 177.36612 * 1 2 3 22 22 H 1.09004 * 109.47317 * 297.36679 * 1 2 3 23 23 H 1.09000 * 109.46999 * 57.36823 * 1 2 3 24 24 H 1.08991 * 110.86004 * 82.23420 * 3 2 1 25 25 H 1.09000 * 110.67451 * 318.97269 * 3 2 1 26 26 H 1.08995 * 110.72415 * 278.77204 * 4 3 2 27 27 H 1.08999 * 110.72278 * 155.66338 * 4 3 2 28 28 H 0.97002 * 120.00029 * 179.97438 * 10 9 7 29 29 H 1.08997 * 109.52860 * 297.17277 * 16 15 2 30 30 H 1.09003 * 109.52030 * 57.35891 * 16 15 2 31 31 H 1.08999 * 109.49249 * 183.00982 * 17 16 15 32 32 H 1.09002 * 109.50428 * 62.96587 * 17 16 15 33 33 H 1.08999 * 109.49158 * 178.57610 * 19 18 17 34 34 H 1.09003 * 109.50755 * 58.51571 * 19 18 17 35 35 H 1.08994 * 109.52671 * 302.63609 * 20 15 2 36 36 H 1.09000 * 109.52276 * 62.82849 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0025 1.3921 0.0000 4 6 3.4469 1.2133 -0.5323 5 6 3.2918 0.1059 -1.6009 6 1 3.2020 0.5472 -2.5935 7 6 4.4665 -0.8368 -1.5524 8 1 4.4707 -1.6589 -0.8521 9 6 5.5361 -0.6497 -2.4022 10 7 5.5313 0.3518 -3.2547 11 14 6.9926 -1.8177 -2.3416 12 1 6.7627 -2.9447 -3.2808 13 1 8.2268 -1.0907 -2.7335 14 1 7.1462 -2.3462 -0.9624 15 6 1.9979 -0.6333 -1.2235 16 6 2.3018 -2.1075 -0.9575 17 6 2.7841 -2.7633 -2.2548 18 8 1.7921 -2.5933 -3.2693 19 6 1.5167 -1.2298 -3.5966 20 6 0.9799 -0.5083 -2.3567 21 1 -0.3633 -1.0266 -0.0472 22 1 -0.3634 0.4724 0.9127 23 1 -0.3633 0.5542 -0.8655 24 1 2.0129 1.8037 1.0091 25 1 1.4219 2.0267 -0.6694 26 1 4.1146 0.8885 0.2656 27 1 3.8086 2.1370 -0.9840 28 1 6.2839 0.4836 -3.8523 29 1 3.0791 -2.1880 -0.1977 30 1 1.3983 -2.6087 -0.6101 31 1 2.9514 -3.8268 -2.0844 32 1 3.7152 -2.2956 -2.5748 33 1 0.7720 -1.1898 -4.3915 34 1 2.4330 -0.7437 -3.9318 35 1 0.0371 -0.9618 -2.0511 36 1 0.8204 0.5447 -2.5885 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260117076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:36 Heat of formation + Delta-G solvation = -47.257651 kcal Electronic energy + Delta-G solvation = -17380.611278 eV Core-core repulsion = 14864.304304 eV Total energy + Delta-G solvation = -2516.306974 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.53716 -38.25243 -35.28816 -32.99394 -32.63337 -31.87469 -27.96095 -26.63677 -25.52550 -24.30892 -23.02097 -21.63035 -19.23972 -18.39930 -17.44238 -16.65635 -16.62745 -16.19747 -15.52426 -15.43175 -15.03240 -14.46329 -14.40122 -13.74773 -13.61880 -13.32649 -12.87000 -12.82768 -12.69420 -12.47139 -12.12356 -12.07316 -11.83855 -11.66110 -11.48420 -11.33437 -10.68889 -10.65262 -10.44669 -10.11691 -9.13837 -8.08770 -6.04560 1.41633 1.45348 1.52283 2.45412 3.13580 3.20772 3.23418 3.95234 4.08878 4.17275 4.28733 4.36495 4.47963 4.54968 4.63249 4.65210 4.78029 4.80834 4.81915 4.90806 4.95618 5.01352 5.07457 5.23394 5.26993 5.36795 5.45129 5.61727 5.68686 5.70032 5.88672 6.25168 6.35925 6.45138 6.52826 6.97734 7.50060 9.00928 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.013125 C = 0.010778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.004775 B = 2132.763443 C = 2597.206443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.042 3.958 4 C -0.113 4.113 5 C 0.036 3.964 6 H 0.030 0.970 7 C -0.493 4.493 8 H 0.069 0.931 9 C 0.015 3.985 10 N -0.925 5.925 11 Si 0.932 3.068 12 H -0.275 1.275 13 H -0.291 1.291 14 H -0.265 1.265 15 C 0.097 3.903 16 C -0.098 4.098 17 C 0.035 3.965 18 O -0.404 6.404 19 C 0.068 3.932 20 C -0.156 4.156 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.258 0.742 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 -1.133 3.413 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.247 5.247 3 C -0.085 4.085 4 C -0.152 4.152 5 C 0.017 3.983 6 H 0.048 0.952 7 C -0.531 4.531 8 H 0.087 0.913 9 C -0.183 4.183 10 N -0.565 5.565 11 Si 0.759 3.241 12 H -0.201 1.201 13 H -0.217 1.217 14 H -0.189 1.189 15 C 0.007 3.993 16 C -0.136 4.136 17 C -0.041 4.041 18 O -0.323 6.323 19 C -0.009 4.009 20 C -0.195 4.195 21 H 0.085 0.915 22 H 0.095 0.905 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.138 -1.493 3.685 9.058 hybrid contribution 0.957 0.397 -0.805 1.311 sum -7.182 -1.096 2.881 7.815 Atomic orbital electron populations 1.22564 0.87806 1.01839 1.01061 1.64830 1.08424 1.14628 1.36825 1.23267 0.95197 0.89636 1.00437 1.22565 0.95100 0.98597 0.98931 1.19645 0.91450 0.92779 0.94420 0.95222 1.21473 1.01659 1.11986 1.17970 0.91332 1.25591 1.00402 0.96706 0.95593 1.70041 1.31893 1.31363 1.23243 0.85937 0.79841 0.79567 0.78802 1.20112 1.21737 1.18906 1.21638 0.94785 0.95268 0.87591 1.21670 0.99814 0.94254 0.97868 1.23456 0.93104 1.00189 0.87388 1.87685 1.60651 1.25827 1.58176 1.22488 0.99439 0.82441 0.96539 1.22632 0.99609 1.00222 0.97033 0.91506 0.90529 0.94927 0.89636 0.94238 0.93278 0.94329 0.93328 0.91395 0.93201 0.89702 0.89578 0.88001 0.94969 0.90274 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.27 127.69 1.06 1.50 16 2 N -0.52 -18.69 5.18 -860.24 -4.46 -23.14 16 3 C 0.04 1.48 6.59 86.55 0.57 2.05 16 4 C -0.11 -4.93 6.59 31.84 0.21 -4.72 16 5 C 0.04 1.70 2.06 -10.73 -0.02 1.68 16 6 H 0.03 1.58 5.90 -2.39 -0.01 1.56 16 7 C -0.49 -24.86 4.57 25.60 0.12 -24.74 16 8 H 0.07 3.42 5.12 -2.91 -0.01 3.40 16 9 C 0.02 0.80 5.11 84.66 0.43 1.23 16 10 N -0.93 -52.18 12.84 21.45 0.28 -51.90 16 11 Si 0.93 42.18 29.54 68.60 2.03 44.20 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 15 C 0.10 3.83 0.59 3.54 0.00 3.83 16 16 C -0.10 -3.87 4.75 30.60 0.15 -3.73 16 17 C 0.03 1.43 6.21 72.03 0.45 1.87 16 18 O -0.40 -16.58 10.75 -148.98 -1.60 -18.18 16 19 C 0.07 2.62 6.62 72.04 0.48 3.10 16 20 C -0.16 -5.59 3.49 30.60 0.11 -5.49 16 21 H 0.07 1.82 7.71 -2.39 -0.02 1.80 16 22 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.03 0.88 6.35 -2.39 -0.02 0.87 16 24 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 25 H 0.04 1.32 7.97 -2.39 -0.02 1.30 16 26 H 0.05 2.23 7.86 -2.39 -0.02 2.21 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.07 2.84 6.23 -2.39 -0.01 2.83 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.09 4.11 4.58 -2.39 -0.01 4.09 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.03 1.46 6.82 -2.39 -0.02 1.44 16 35 H 0.08 2.54 6.33 -2.39 -0.02 2.53 16 36 H 0.06 2.18 7.83 -2.39 -0.02 2.16 16 Total: -1.00 -56.45 264.33 0.84 -55.60 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.06 Total: 16.83 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 3.54 Total: -23.41 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -4.18 Total: -75.05 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -1.60 Total: -18.18 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -56.45 0.84 -55.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.346 kcal (2) G-P(sol) polarization free energy of solvation -56.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds