Wall clock time and date at job start Mon Mar 30 2020 03:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 119.99676 * 2 1 4 4 N 1.34779 * 120.00393 * 179.97438 * 2 1 3 5 5 C 1.46492 * 120.00092 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47333 * 184.86082 * 5 4 2 7 7 C 1.50701 * 109.47418 * 304.86595 * 5 4 2 8 8 H 1.08002 * 119.99522 * 115.64740 * 7 5 4 9 9 C 1.37870 * 120.00186 * 295.64504 * 7 5 4 10 10 N 1.31516 * 119.99720 * 354.18816 * 9 7 5 11 11 Si 1.86799 * 120.00350 * 174.19370 * 9 7 5 12 12 H 1.48500 * 109.46890 * 265.27849 * 11 9 7 13 13 H 1.48500 * 109.46792 * 25.27557 * 11 9 7 14 14 H 1.48493 * 109.47482 * 145.27814 * 11 9 7 15 15 C 1.53010 * 109.46995 * 64.86785 * 5 4 2 16 16 C 1.53004 * 109.46721 * 179.97438 * 15 5 4 17 17 C 1.53002 * 109.46609 * 180.02562 * 16 15 5 18 18 C 1.52995 * 109.47357 * 59.99697 * 17 16 15 19 19 C 1.52993 * 109.47331 * 300.00049 * 18 17 16 20 20 C 1.52997 * 109.47152 * 59.99964 * 19 18 17 21 21 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47026 * 299.99600 * 1 2 3 23 23 H 1.08996 * 109.46905 * 60.00312 * 1 2 3 24 24 H 0.96998 * 119.99393 * 0.02562 * 4 2 1 25 25 H 0.97003 * 120.00365 * 179.97438 * 10 9 7 26 26 H 1.08997 * 109.46673 * 299.99612 * 15 5 4 27 27 H 1.09001 * 109.46951 * 299.99599 * 16 15 5 28 28 H 1.09001 * 109.47210 * 60.00178 * 16 15 5 29 29 H 1.09001 * 109.47019 * 299.99413 * 17 16 15 30 30 H 1.09004 * 109.46791 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.47159 * 179.97438 * 18 17 16 32 32 H 1.09005 * 109.47218 * 60.00627 * 18 17 16 33 33 H 1.08995 * 109.47435 * 299.99890 * 19 18 17 34 34 H 1.09000 * 109.47468 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.47004 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47418 * 59.99911 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0093 -2.1911 -0.0866 7 6 4.1478 -0.3556 -1.1665 8 1 4.7095 0.5502 -0.9923 9 6 3.8900 -0.7696 -2.4561 10 7 3.3069 -1.9288 -2.6703 11 14 4.3689 0.3158 -3.8990 12 1 3.2045 1.1439 -4.3033 13 1 5.4919 1.2019 -3.5004 14 1 4.7910 -0.5354 -5.0401 15 6 4.1564 -0.5535 1.3054 16 6 5.6864 -0.5540 1.3050 17 6 6.1968 0.0589 2.6106 18 6 5.6868 -0.7650 3.7946 19 6 4.1568 -0.7645 3.7949 20 6 3.6464 -1.3775 2.4893 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6960 -2.0072 0.0005 25 1 3.1251 -2.2200 -3.5776 26 1 3.7930 0.4705 1.3919 27 1 6.0493 -1.5782 1.2186 28 1 6.0498 0.0327 0.4613 29 1 5.8339 1.0831 2.6975 30 1 7.2869 0.0581 2.6106 31 1 6.0508 -0.3286 4.7247 32 1 6.0498 -1.7892 3.7078 33 1 3.7938 0.2595 3.8817 34 1 3.7934 -1.3511 4.6386 35 1 2.5563 -1.3767 2.4894 36 1 4.0093 -2.4016 2.4024 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260170403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:33 Heat of formation + Delta-G solvation = -71.165904 kcal Electronic energy + Delta-G solvation = -16625.519925 eV Core-core repulsion = 14108.176212 eV Total energy + Delta-G solvation = -2517.343713 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.80666 -37.29361 -34.00232 -31.87653 -30.72147 -30.09433 -28.54359 -26.01109 -23.02888 -21.85383 -20.57723 -19.37605 -18.46323 -16.36438 -15.80939 -15.05692 -14.44372 -14.24037 -13.85770 -13.63116 -13.47843 -12.97794 -12.40855 -12.02688 -11.87753 -11.57796 -11.54120 -11.40932 -11.17363 -10.84895 -10.67123 -10.52591 -10.38814 -10.00469 -9.83730 -9.51760 -9.21283 -9.00279 -8.66889 -8.17687 -7.38246 -5.99776 -3.98716 3.35637 3.42304 3.47959 3.98671 4.50312 4.68160 5.24935 5.34791 5.35652 5.46117 5.79379 5.85424 5.90259 6.03799 6.07663 6.09694 6.10893 6.15344 6.26580 6.29293 6.47682 6.51156 6.63376 6.70723 6.81397 6.93000 7.12382 7.14939 7.28433 7.57872 7.96601 8.19185 8.30856 8.97331 9.12110 9.65601 9.73248 11.08387 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.011063 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.630746 B = 2530.370714 C = 3196.603177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.504 3.496 3 O -0.550 6.550 4 N -0.697 5.697 5 C 0.271 3.729 6 H 0.047 0.953 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.067 3.933 10 N -0.891 5.891 11 Si 0.889 3.111 12 H -0.283 1.283 13 H -0.273 1.273 14 H -0.290 1.290 15 C -0.093 4.093 16 C -0.101 4.101 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.111 4.111 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.376 0.624 25 H 0.258 0.742 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 -1.004 9.089 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.289 3.711 3 O -0.429 6.429 4 N -0.344 5.344 5 C 0.170 3.830 6 H 0.064 0.936 7 C -0.529 4.529 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.530 5.530 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.198 1.198 14 H -0.216 1.216 15 C -0.112 4.112 16 C -0.139 4.139 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.148 4.148 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.207 0.793 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.643 -0.383 8.954 8.985 hybrid contribution -0.238 0.084 -1.040 1.070 sum -0.882 -0.299 7.914 7.968 Atomic orbital electron populations 1.21888 0.95512 1.02585 1.03313 1.20206 0.88786 0.84886 0.77192 1.90593 1.70260 1.31545 1.50466 1.46657 1.09235 1.06247 1.72251 1.18667 0.76481 0.96765 0.91061 0.93563 1.21292 1.33087 1.08604 0.89942 0.92201 1.24948 0.95026 0.94652 0.98895 1.69938 1.43278 1.19099 1.20731 0.86626 0.78822 0.80683 0.82124 1.20952 1.19827 1.21601 1.21483 0.94463 1.00551 0.94709 1.21424 0.96018 1.00336 0.96080 1.21578 0.99130 0.99299 0.95713 1.21505 0.95989 1.00074 0.97717 1.21518 0.95540 1.00655 0.97728 1.21577 0.99737 0.98997 0.94528 0.91818 0.90599 0.90308 0.79339 0.93284 0.90636 0.93060 0.91022 0.92572 0.93056 0.93238 0.92484 0.92579 0.93277 0.92877 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.39 36.01 0.37 -2.51 16 2 C 0.50 11.22 7.36 -10.98 -0.08 11.14 16 3 O -0.55 -14.46 14.41 5.55 0.08 -14.38 16 4 N -0.70 -15.24 4.20 -54.93 -0.23 -15.47 16 5 C 0.27 6.45 1.95 -69.08 -0.13 6.31 16 6 H 0.05 1.17 8.13 -51.93 -0.42 0.75 16 7 C -0.49 -13.40 6.15 -34.44 -0.21 -13.61 16 8 H 0.06 1.72 6.89 -52.49 -0.36 1.36 16 9 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 10 N -0.89 -24.90 13.10 55.43 0.73 -24.18 16 11 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 12 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 C -0.09 -1.92 1.59 -90.61 -0.14 -2.06 16 16 C -0.10 -1.93 4.95 -26.73 -0.13 -2.07 16 17 C -0.12 -1.91 5.92 -26.73 -0.16 -2.07 16 18 C -0.12 -1.65 5.92 -26.74 -0.16 -1.81 16 19 C -0.12 -1.77 5.92 -26.74 -0.16 -1.92 16 20 C -0.11 -1.93 5.04 -26.73 -0.13 -2.06 16 21 H 0.06 0.90 7.91 -51.93 -0.41 0.49 16 22 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 24 H 0.38 7.39 8.67 -40.82 -0.35 7.03 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.08 1.78 6.53 -51.93 -0.34 1.44 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.52 6.71 -51.93 -0.35 1.17 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.92 7.60 -51.93 -0.39 0.53 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 285.35 15.07 4.30 4.30 Total: -1.00 -30.12 285.35 -7.18 -37.30 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.99 Total: 4.09 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.04 Total: -8.90 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.50 Total: -39.65 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.12 -7.18 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.866 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds