Wall clock time and date at job start Mon Mar 30 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 119.99676 * 2 1 4 4 N 1.34779 * 120.00393 * 179.97438 * 2 1 3 5 5 C 1.46492 * 120.00092 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47333 * 184.86082 * 5 4 2 7 7 C 1.50701 * 109.47418 * 304.86595 * 5 4 2 8 8 H 1.08002 * 119.99522 * 115.64740 * 7 5 4 9 9 C 1.37870 * 120.00186 * 295.64504 * 7 5 4 10 10 N 1.31516 * 119.99720 * 354.18816 * 9 7 5 11 11 Si 1.86799 * 120.00350 * 174.19370 * 9 7 5 12 12 H 1.48500 * 109.46890 * 265.27849 * 11 9 7 13 13 H 1.48500 * 109.46792 * 25.27557 * 11 9 7 14 14 H 1.48493 * 109.47482 * 145.27814 * 11 9 7 15 15 C 1.53010 * 109.46995 * 64.86785 * 5 4 2 16 16 C 1.53004 * 109.46721 * 179.97438 * 15 5 4 17 17 C 1.53002 * 109.46609 * 180.02562 * 16 15 5 18 18 C 1.52995 * 109.47357 * 59.99697 * 17 16 15 19 19 C 1.52993 * 109.47331 * 300.00049 * 18 17 16 20 20 C 1.52997 * 109.47152 * 59.99964 * 19 18 17 21 21 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47026 * 299.99600 * 1 2 3 23 23 H 1.08996 * 109.46905 * 60.00312 * 1 2 3 24 24 H 0.96998 * 119.99393 * 0.02562 * 4 2 1 25 25 H 0.97003 * 120.00365 * 179.97438 * 10 9 7 26 26 H 1.08997 * 109.46673 * 299.99612 * 15 5 4 27 27 H 1.09001 * 109.46951 * 299.99599 * 16 15 5 28 28 H 1.09001 * 109.47210 * 60.00178 * 16 15 5 29 29 H 1.09001 * 109.47019 * 299.99413 * 17 16 15 30 30 H 1.09004 * 109.46791 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.47159 * 179.97438 * 18 17 16 32 32 H 1.09005 * 109.47218 * 60.00627 * 18 17 16 33 33 H 1.08995 * 109.47435 * 299.99890 * 19 18 17 34 34 H 1.09000 * 109.47468 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.47004 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47418 * 59.99911 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0093 -2.1911 -0.0866 7 6 4.1478 -0.3556 -1.1665 8 1 4.7095 0.5502 -0.9923 9 6 3.8900 -0.7696 -2.4561 10 7 3.3069 -1.9288 -2.6703 11 14 4.3689 0.3158 -3.8990 12 1 3.2045 1.1439 -4.3033 13 1 5.4919 1.2019 -3.5004 14 1 4.7910 -0.5354 -5.0401 15 6 4.1564 -0.5535 1.3054 16 6 5.6864 -0.5540 1.3050 17 6 6.1968 0.0589 2.6106 18 6 5.6868 -0.7650 3.7946 19 6 4.1568 -0.7645 3.7949 20 6 3.6464 -1.3775 2.4893 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6960 -2.0072 0.0005 25 1 3.1251 -2.2200 -3.5776 26 1 3.7930 0.4705 1.3919 27 1 6.0493 -1.5782 1.2186 28 1 6.0498 0.0327 0.4613 29 1 5.8339 1.0831 2.6975 30 1 7.2869 0.0581 2.6106 31 1 6.0508 -0.3286 4.7247 32 1 6.0498 -1.7892 3.7078 33 1 3.7938 0.2595 3.8817 34 1 3.7934 -1.3511 4.6386 35 1 2.5563 -1.3767 2.4894 36 1 4.0093 -2.4016 2.4024 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260170403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:32 Heat of formation + Delta-G solvation = -89.910269 kcal Electronic energy + Delta-G solvation = -16626.332742 eV Core-core repulsion = 14108.176212 eV Total energy + Delta-G solvation = -2518.156530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51714 -38.85136 -35.84371 -33.89870 -32.32888 -31.47721 -30.00882 -27.91725 -24.78617 -23.26192 -22.16578 -20.92830 -20.15123 -18.39104 -17.55147 -16.77039 -16.28243 -15.98757 -15.44526 -14.94451 -14.85695 -14.70274 -14.15737 -13.58439 -13.50116 -13.12366 -13.07801 -12.93516 -12.81483 -12.69450 -12.54310 -11.96038 -11.91212 -11.74148 -11.45687 -11.18121 -10.80964 -10.73638 -10.62682 -10.10799 -9.24566 -8.12319 -6.15318 1.31809 1.35633 1.44538 2.23904 2.42343 2.91823 3.39266 3.95174 4.05848 4.07786 4.35557 4.49352 4.52895 4.63122 4.74414 4.76492 4.78758 4.84871 4.86796 4.93010 5.12646 5.18073 5.21949 5.29080 5.36270 5.46118 5.52244 5.55171 5.67297 5.78203 5.89340 6.28482 6.36181 6.85262 7.29689 7.50753 7.99439 8.93437 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.011063 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.630746 B = 2530.370714 C = 3196.603177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.491 3.509 3 O -0.599 6.599 4 N -0.693 5.693 5 C 0.272 3.728 6 H 0.029 0.971 7 C -0.499 4.499 8 H 0.034 0.966 9 C 0.027 3.973 10 N -0.906 5.906 11 Si 0.932 3.068 12 H -0.290 1.290 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.084 4.084 16 C -0.100 4.100 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.105 4.105 21 H 0.092 0.908 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.388 0.612 25 H 0.259 0.741 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -1.725 10.516 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.278 3.722 3 O -0.481 6.481 4 N -0.340 5.340 5 C 0.170 3.830 6 H 0.047 0.953 7 C -0.539 4.539 8 H 0.052 0.948 9 C -0.173 4.173 10 N -0.547 5.547 11 Si 0.760 3.240 12 H -0.216 1.216 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.103 4.103 16 C -0.138 4.138 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.142 4.142 21 H 0.111 0.889 22 H 0.118 0.882 23 H 0.100 0.900 24 H 0.221 0.779 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.176 -1.131 10.380 10.507 hybrid contribution -0.073 0.316 -1.492 1.527 sum -1.249 -0.816 8.888 9.012 Atomic orbital electron populations 1.21817 0.90623 1.04978 1.04584 1.21183 0.91215 0.83912 0.75847 1.90574 1.71908 1.33068 1.52530 1.46433 1.08604 1.07118 1.71826 1.18515 0.77667 0.95213 0.91620 0.95260 1.21419 1.32973 1.07889 0.91573 0.94807 1.25447 0.95555 0.95714 1.00547 1.69977 1.44049 1.19587 1.21040 0.85950 0.78095 0.79521 0.80453 1.21632 1.20190 1.20230 1.21306 0.95325 0.98910 0.94792 1.21373 0.95154 1.00182 0.97071 1.21537 1.00240 0.98848 0.94659 1.21499 0.95252 1.00382 0.97724 1.21504 0.96206 1.00375 0.97036 1.21498 0.99651 0.98759 0.94309 0.88906 0.88198 0.90036 0.77879 0.93190 0.93902 0.92775 0.94213 0.93494 0.91221 0.90617 0.91544 0.93446 0.90518 0.92999 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 10.39 71.24 0.74 -4.24 16 2 C 0.49 21.72 7.36 87.66 0.65 22.37 16 3 O -0.60 -32.18 14.41 -3.05 -0.04 -32.22 16 4 N -0.69 -30.24 4.20 -446.08 -1.88 -32.11 16 5 C 0.27 13.20 1.95 44.25 0.09 13.29 16 6 H 0.03 1.51 8.13 -2.38 -0.02 1.49 16 7 C -0.50 -28.18 6.15 25.60 0.16 -28.02 16 8 H 0.03 2.04 6.89 -2.91 -0.02 2.02 16 9 C 0.03 1.54 5.38 84.65 0.46 1.99 16 10 N -0.91 -50.86 13.10 21.44 0.28 -50.58 16 11 Si 0.93 46.34 29.54 68.60 2.03 48.36 16 12 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 13 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 15 C -0.08 -3.53 1.59 -10.79 -0.02 -3.55 16 16 C -0.10 -3.89 4.95 30.60 0.15 -3.74 16 17 C -0.12 -3.56 5.92 30.59 0.18 -3.38 16 18 C -0.11 -2.85 5.92 30.59 0.18 -2.67 16 19 C -0.11 -3.14 5.92 30.59 0.18 -2.96 16 20 C -0.10 -3.51 5.04 30.59 0.15 -3.35 16 21 H 0.09 2.33 7.91 -2.39 -0.02 2.31 16 22 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 23 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.39 14.91 8.67 -92.71 -0.80 14.11 16 25 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 26 H 0.04 2.09 6.53 -2.39 -0.02 2.07 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.76 6.71 -2.39 -0.02 1.75 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.73 7.60 -2.38 -0.02 1.71 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -66.37 285.35 3.55 -62.82 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.24 Total: 17.99 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 2.92 Total: -14.27 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.59 Total: -82.69 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.04 Total: -32.22 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -66.37 3.55 -62.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.089 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds