Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.47132 * 1 3 3 C 1.46249 * 110.97959 * 2 1 4 4 C 1.52848 * 111.08724 * 180.94348 * 3 2 1 5 5 H 1.09925 * 108.47834 * 184.46487 * 4 3 2 6 6 C 1.52023 * 110.97501 * 64.72379 * 4 3 2 7 7 C 1.51695 * 113.85972 * 291.38732 * 6 4 3 8 8 O 1.42814 * 110.99864 * 84.25242 * 7 6 4 9 9 C 1.51675 * 114.43028 * 317.65567 * 7 6 4 10 10 C 1.52017 * 113.92139 * 42.31640 * 9 7 6 11 11 H 1.09922 * 109.02009 * 188.12892 * 10 9 7 12 12 C 1.46255 * 110.97678 * 127.23245 * 2 1 3 13 13 C 1.52896 * 109.15594 * 302.53811 * 4 3 2 14 14 C 1.50329 * 110.62731 * 181.61189 * 13 4 3 15 15 H 1.08006 * 119.99898 * 274.30431 * 14 13 4 16 16 C 1.37869 * 119.99957 * 94.30180 * 14 13 4 17 17 N 1.31516 * 120.00193 * 183.47853 * 16 14 13 18 18 Si 1.86802 * 120.00242 * 3.48187 * 16 14 13 19 19 H 1.48504 * 109.46935 * 84.83936 * 18 16 14 20 20 H 1.48497 * 109.47474 * 204.83934 * 18 16 14 21 21 H 1.48499 * 109.46867 * 324.84312 * 18 16 14 22 22 H 1.09004 * 109.46671 * 292.77292 * 1 2 3 23 23 H 1.08998 * 109.47092 * 52.76405 * 1 2 3 24 24 H 1.08996 * 109.47277 * 172.77054 * 1 2 3 25 25 H 1.09332 * 109.39615 * 301.53049 * 3 2 1 26 26 H 1.09304 * 109.43740 * 60.29103 * 3 2 1 27 27 H 1.09735 * 109.55954 * 168.51335 * 6 4 3 28 28 H 1.10186 * 108.58678 * 52.67975 * 6 4 3 29 29 H 1.11369 * 106.96784 * 199.36577 * 7 6 4 30 30 H 0.96704 * 113.99753 * 180.02562 * 8 7 6 31 31 H 1.10192 * 108.73212 * 163.53301 * 9 7 6 32 32 H 1.09759 * 109.40467 * 279.33817 * 9 7 6 33 33 H 1.09335 * 109.40580 * 58.38701 * 12 2 1 34 34 H 1.09317 * 109.43519 * 299.62999 * 12 2 1 35 35 H 1.09411 * 109.19983 * 301.86995 * 13 4 3 36 36 H 0.97002 * 120.00600 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4713 0.0000 0.0000 3 6 1.9949 1.3655 0.0000 4 6 3.5232 1.3685 -0.0235 5 1 3.8709 2.4081 0.0585 6 6 4.0487 0.7710 -1.3189 7 6 3.7967 -0.7187 -1.4541 8 8 2.4884 -0.9720 -1.9677 9 6 4.0473 -1.5148 -0.1876 10 6 3.5230 -0.8476 1.0737 11 1 3.8716 -1.4131 1.9495 12 6 1.9949 -0.8263 1.0873 13 6 4.0450 0.5854 1.1816 14 6 5.5479 0.6005 1.2126 15 1 6.1070 -0.1337 0.6515 16 6 6.2126 1.5516 1.9572 17 7 7.5262 1.6079 1.9303 18 14 5.2472 2.7602 3.0045 19 1 4.9438 2.1426 4.3205 20 1 6.0524 3.9911 3.2093 21 1 3.9780 3.1077 2.3164 22 1 -0.3633 0.3978 0.9476 23 1 -0.3633 0.6218 -0.8182 24 1 -0.3633 -1.0194 -0.1293 25 1 1.6214 1.8976 -0.8790 26 1 1.6482 1.8881 0.8953 27 1 5.1248 0.9681 -1.4044 28 1 3.5692 1.2894 -2.1647 29 1 4.5061 -1.0999 -2.2234 30 1 2.2814 -1.9109 -2.0711 31 1 3.5664 -2.5011 -0.2886 32 1 5.1233 -1.7042 -0.0827 33 1 1.6202 -1.8478 0.9801 34 1 1.6492 -0.4287 2.0451 35 1 3.6609 1.0400 2.0998 36 1 7.9939 2.2768 2.4545 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = -47.189157 kcal Electronic energy + Delta-G solvation = -17334.094957 eV Core-core repulsion = 14817.790953 eV Total energy + Delta-G solvation = -2516.304004 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65593 -35.83555 -34.24669 -32.07336 -31.81960 -29.20904 -27.13131 -25.76582 -24.05813 -21.37513 -20.90674 -20.68987 -17.42991 -16.59308 -15.73585 -15.10746 -14.60371 -14.24339 -13.88645 -13.84223 -13.42698 -13.20923 -12.56839 -12.28980 -12.03572 -11.82455 -11.57741 -11.31129 -10.99509 -10.84787 -10.62880 -10.43328 -10.19686 -9.95889 -9.73156 -9.46352 -8.97840 -8.71613 -8.62288 -8.42104 -7.41024 -6.05717 -4.03306 3.28455 3.37554 3.39886 4.43464 4.53403 5.10924 5.22271 5.42230 5.53810 5.60143 5.73281 5.78330 5.84172 5.92752 6.02226 6.13052 6.15668 6.21585 6.27403 6.43286 6.51249 6.60500 6.61389 6.68996 6.80519 6.90670 7.10820 7.21186 7.33090 7.46077 7.73227 7.87120 7.89148 8.52663 8.57820 9.00870 9.58789 11.07331 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032987 B = 0.012058 C = 0.010553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.620531 B = 2321.562366 C = 2652.694520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.514 5.514 3 C 0.074 3.926 4 C -0.079 4.079 5 H 0.060 0.940 6 C -0.074 4.074 7 C 0.139 3.861 8 O -0.540 6.540 9 C -0.114 4.114 10 C -0.070 4.070 11 H 0.063 0.937 12 C 0.071 3.929 13 C 0.026 3.974 14 C -0.500 4.500 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.902 5.902 18 Si 0.873 3.127 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.266 1.266 22 H 0.009 0.991 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.010 0.990 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.013 0.987 30 H 0.351 0.649 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.014 0.986 35 H 0.024 0.976 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 -3.966 -4.033 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.238 5.238 3 C -0.054 4.054 4 C -0.098 4.098 5 H 0.078 0.922 6 C -0.112 4.112 7 C 0.080 3.920 8 O -0.342 6.342 9 C -0.152 4.152 10 C -0.089 4.089 11 H 0.081 0.919 12 C -0.057 4.057 13 C 0.007 3.993 14 C -0.538 4.538 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.701 3.299 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.191 1.191 22 H 0.027 0.973 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.195 0.805 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.506 -3.402 -4.376 11.878 hybrid contribution -0.600 0.505 1.497 1.690 sum -11.106 -2.897 -2.879 11.833 Atomic orbital electron populations 1.22238 0.88821 1.01126 0.98923 1.60630 1.05108 1.12712 1.45383 1.21972 0.96874 0.88200 0.98357 1.21230 0.91367 0.99814 0.97372 0.92177 1.20855 1.01009 0.92865 0.96432 1.21059 0.82877 0.95746 0.92305 1.86683 1.34048 1.27417 1.86048 1.21677 1.01310 0.96736 0.95486 1.20934 0.91711 0.99348 0.96886 0.91892 1.22000 0.96534 0.96365 0.90815 1.19060 0.96605 0.90858 0.92762 1.20880 0.88694 1.15195 1.29046 0.90524 1.25043 0.94623 0.96913 0.96448 1.69897 1.06990 1.35575 1.41562 0.86935 0.80499 0.81150 0.81350 1.20453 1.21746 1.19080 0.97287 0.92230 0.92314 0.92350 0.97150 0.90684 0.93782 0.96947 0.80476 0.94252 0.91444 0.92435 0.96835 0.95806 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 9.62 60.19 0.58 1.12 16 2 N -0.51 -8.86 1.68 -243.42 -0.41 -9.27 16 3 C 0.07 1.39 4.85 -4.26 -0.02 1.37 16 4 C -0.08 -1.66 2.51 -91.25 -0.23 -1.89 16 5 H 0.06 1.35 7.95 -51.40 -0.41 0.94 16 6 C -0.07 -1.48 4.57 -27.89 -0.13 -1.61 16 7 C 0.14 2.51 2.98 -28.06 -0.08 2.43 16 8 O -0.54 -8.96 10.78 -35.23 -0.38 -9.34 16 9 C -0.11 -2.09 4.53 -27.90 -0.13 -2.22 16 10 C -0.07 -1.39 2.51 -91.26 -0.23 -1.61 16 11 H 0.06 1.27 8.22 -51.40 -0.42 0.85 16 12 C 0.07 1.24 4.86 -4.26 -0.02 1.22 16 13 C 0.03 0.60 1.39 -92.06 -0.13 0.47 16 14 C -0.50 -13.33 7.72 -34.62 -0.27 -13.60 16 15 H 0.08 2.20 6.69 -52.48 -0.35 1.85 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 18 Si 0.87 21.48 26.79 -169.99 -4.55 16.93 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.27 -6.33 6.76 56.52 0.38 -5.95 16 22 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 23 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.05 8.14 -51.74 -0.42 0.62 16 26 H 0.01 0.20 8.17 -51.76 -0.42 -0.22 16 27 H 0.07 1.61 7.76 -51.51 -0.40 1.21 16 28 H 0.04 0.83 8.21 -51.25 -0.42 0.41 16 29 H 0.01 0.22 8.31 -50.56 -0.42 -0.20 16 30 H 0.35 4.60 8.86 45.56 0.40 5.01 16 31 H 0.04 0.62 8.00 -51.25 -0.41 0.21 16 32 H 0.07 1.34 6.97 -51.50 -0.36 0.98 16 33 H 0.06 0.90 8.17 -51.74 -0.42 0.48 16 34 H 0.01 0.24 8.17 -51.75 -0.42 -0.18 16 35 H 0.02 0.57 5.41 -51.70 -0.28 0.29 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 266.89 15.07 4.02 4.02 Total: -1.00 -29.19 266.89 -6.47 -35.67 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.18 Total: 0.64 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.75 Total: -12.43 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.36 Total: -35.49 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.38 Total: -9.34 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.55 Total: 16.93 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.19 -6.47 -35.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.524 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds