Wall clock time and date at job start Mon Mar 30 2020 03:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.47132 * 1 3 3 C 1.46249 * 110.97959 * 2 1 4 4 C 1.52848 * 111.08724 * 180.94348 * 3 2 1 5 5 H 1.09925 * 108.47834 * 184.46487 * 4 3 2 6 6 C 1.52023 * 110.97501 * 64.72379 * 4 3 2 7 7 C 1.51695 * 113.85972 * 291.38732 * 6 4 3 8 8 O 1.42814 * 110.99864 * 84.25242 * 7 6 4 9 9 C 1.51675 * 114.43028 * 317.65567 * 7 6 4 10 10 C 1.52017 * 113.92139 * 42.31640 * 9 7 6 11 11 H 1.09922 * 109.02009 * 188.12892 * 10 9 7 12 12 C 1.46255 * 110.97678 * 127.23245 * 2 1 3 13 13 C 1.52896 * 109.15594 * 302.53811 * 4 3 2 14 14 C 1.50329 * 110.62731 * 181.61189 * 13 4 3 15 15 H 1.08006 * 119.99898 * 274.30431 * 14 13 4 16 16 C 1.37869 * 119.99957 * 94.30180 * 14 13 4 17 17 N 1.31516 * 120.00193 * 183.47853 * 16 14 13 18 18 Si 1.86802 * 120.00242 * 3.48187 * 16 14 13 19 19 H 1.48504 * 109.46935 * 84.83936 * 18 16 14 20 20 H 1.48497 * 109.47474 * 204.83934 * 18 16 14 21 21 H 1.48499 * 109.46867 * 324.84312 * 18 16 14 22 22 H 1.09004 * 109.46671 * 292.77292 * 1 2 3 23 23 H 1.08998 * 109.47092 * 52.76405 * 1 2 3 24 24 H 1.08996 * 109.47277 * 172.77054 * 1 2 3 25 25 H 1.09332 * 109.39615 * 301.53049 * 3 2 1 26 26 H 1.09304 * 109.43740 * 60.29103 * 3 2 1 27 27 H 1.09735 * 109.55954 * 168.51335 * 6 4 3 28 28 H 1.10186 * 108.58678 * 52.67975 * 6 4 3 29 29 H 1.11369 * 106.96784 * 199.36577 * 7 6 4 30 30 H 0.96704 * 113.99753 * 180.02562 * 8 7 6 31 31 H 1.10192 * 108.73212 * 163.53301 * 9 7 6 32 32 H 1.09759 * 109.40467 * 279.33817 * 9 7 6 33 33 H 1.09335 * 109.40580 * 58.38701 * 12 2 1 34 34 H 1.09317 * 109.43519 * 299.62999 * 12 2 1 35 35 H 1.09411 * 109.19983 * 301.86995 * 13 4 3 36 36 H 0.97002 * 120.00600 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4713 0.0000 0.0000 3 6 1.9949 1.3655 0.0000 4 6 3.5232 1.3685 -0.0235 5 1 3.8709 2.4081 0.0585 6 6 4.0487 0.7710 -1.3189 7 6 3.7967 -0.7187 -1.4541 8 8 2.4884 -0.9720 -1.9677 9 6 4.0473 -1.5148 -0.1876 10 6 3.5230 -0.8476 1.0737 11 1 3.8716 -1.4131 1.9495 12 6 1.9949 -0.8263 1.0873 13 6 4.0450 0.5854 1.1816 14 6 5.5479 0.6005 1.2126 15 1 6.1070 -0.1337 0.6515 16 6 6.2126 1.5516 1.9572 17 7 7.5262 1.6079 1.9303 18 14 5.2472 2.7602 3.0045 19 1 4.9438 2.1426 4.3205 20 1 6.0524 3.9911 3.2093 21 1 3.9780 3.1077 2.3164 22 1 -0.3633 0.3978 0.9476 23 1 -0.3633 0.6218 -0.8182 24 1 -0.3633 -1.0194 -0.1293 25 1 1.6214 1.8976 -0.8790 26 1 1.6482 1.8881 0.8953 27 1 5.1248 0.9681 -1.4044 28 1 3.5692 1.2894 -2.1647 29 1 4.5061 -1.0999 -2.2234 30 1 2.2814 -1.9109 -2.0711 31 1 3.5664 -2.5011 -0.2886 32 1 5.1233 -1.7042 -0.0827 33 1 1.6202 -1.8478 0.9801 34 1 1.6492 -0.4287 2.0451 35 1 3.6609 1.0400 2.0998 36 1 7.9939 2.2768 2.4545 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260269839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:55 Heat of formation + Delta-G solvation = -66.682560 kcal Electronic energy + Delta-G solvation = -17334.940254 eV Core-core repulsion = 14817.790953 eV Total energy + Delta-G solvation = -2517.149301 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20080 -37.17849 -35.84549 -34.05165 -33.38035 -30.81709 -28.72242 -27.24147 -25.65201 -23.08988 -22.47226 -22.14327 -19.17697 -18.43067 -17.32880 -16.59581 -16.16829 -15.72022 -15.53523 -15.35780 -14.97224 -14.66582 -14.52718 -13.96488 -13.52560 -13.18814 -13.00892 -12.91222 -12.69778 -12.48362 -12.11030 -12.08572 -11.75384 -11.73245 -11.50526 -11.21826 -10.77093 -10.51721 -10.40614 -10.05670 -8.74869 -8.24001 -6.23462 1.30299 1.33493 1.42818 2.35634 3.10637 3.19751 3.71763 3.93244 4.01574 4.16090 4.33192 4.38122 4.45545 4.58759 4.60560 4.72520 4.75361 4.84044 4.86306 4.94693 5.01043 5.06384 5.11957 5.15374 5.19467 5.37041 5.47575 5.58668 5.65992 5.75552 5.82201 6.42506 6.46113 6.49837 6.84095 7.37967 7.40901 8.92415 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032987 B = 0.012058 C = 0.010553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.620531 B = 2321.562366 C = 2652.694520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.517 5.517 3 C 0.080 3.920 4 C -0.079 4.079 5 H 0.037 0.963 6 C -0.074 4.074 7 C 0.147 3.853 8 O -0.539 6.539 9 C -0.112 4.112 10 C -0.072 4.072 11 H 0.053 0.947 12 C 0.077 3.923 13 C 0.022 3.978 14 C -0.488 4.488 15 H 0.044 0.956 16 C 0.013 3.987 17 N -0.950 5.950 18 Si 0.930 3.070 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.254 1.254 22 H 0.011 0.989 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.018 0.982 30 H 0.372 0.628 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.009 0.991 35 H 0.012 0.988 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 -4.761 -4.494 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.241 5.241 3 C -0.048 4.048 4 C -0.098 4.098 5 H 0.056 0.944 6 C -0.111 4.111 7 C 0.087 3.913 8 O -0.344 6.344 9 C -0.150 4.150 10 C -0.091 4.091 11 H 0.072 0.928 12 C -0.051 4.051 13 C 0.003 3.997 14 C -0.527 4.527 15 H 0.063 0.937 16 C -0.184 4.184 17 N -0.592 5.592 18 Si 0.756 3.244 19 H -0.198 1.198 20 H -0.218 1.218 21 H -0.178 1.178 22 H 0.030 0.970 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.218 0.782 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.031 0.969 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.532 -4.220 -4.846 14.980 hybrid contribution 0.335 0.674 1.577 1.747 sum -13.198 -3.546 -3.269 14.051 Atomic orbital electron populations 1.22310 0.86457 1.02759 0.99419 1.60648 1.07092 1.11344 1.45054 1.21828 0.94611 0.89627 0.98706 1.21127 0.93622 0.98184 0.96885 0.94407 1.20797 0.99235 0.94822 0.96273 1.20788 0.84059 0.94059 0.92358 1.86631 1.32609 1.29463 1.85685 1.21635 0.99949 0.98419 0.94952 1.20905 0.93971 0.96881 0.97376 0.92815 1.21927 0.94234 0.98069 0.90877 1.19053 0.93890 0.93641 0.93141 1.21118 0.90920 1.13442 1.27174 0.93731 1.25791 0.95341 0.99057 0.98175 1.70038 1.08709 1.37028 1.43389 0.85996 0.79533 0.78945 0.79930 1.19772 1.21816 1.17778 0.97010 0.91415 0.90193 0.91067 0.97750 0.93599 0.92652 0.96386 0.78161 0.90746 0.94126 0.89473 0.97284 0.96940 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 9.62 127.65 1.23 2.15 16 2 N -0.52 -15.84 1.68 -924.05 -1.55 -17.39 16 3 C 0.08 2.83 4.85 86.38 0.42 3.25 16 4 C -0.08 -3.28 2.51 -11.20 -0.03 -3.31 16 5 H 0.04 1.70 7.95 -1.89 -0.02 1.69 16 6 C -0.07 -2.91 4.57 29.84 0.14 -2.77 16 7 C 0.15 5.01 2.98 29.73 0.09 5.09 16 8 O -0.54 -15.71 10.78 -148.98 -1.61 -17.31 16 9 C -0.11 -3.90 4.53 29.84 0.14 -3.77 16 10 C -0.07 -2.76 2.51 -11.21 -0.03 -2.79 16 11 H 0.05 2.12 8.22 -1.89 -0.02 2.10 16 12 C 0.08 2.42 4.86 86.37 0.42 2.84 16 13 C 0.02 0.99 1.39 -11.72 -0.02 0.98 16 14 C -0.49 -26.84 7.72 25.48 0.20 -26.65 16 15 H 0.04 2.69 6.69 -2.91 -0.02 2.67 16 16 C 0.01 0.73 5.47 84.65 0.46 1.19 16 17 N -0.95 -59.07 13.96 21.44 0.30 -58.77 16 18 Si 0.93 45.06 26.79 68.60 1.84 46.90 16 19 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.25 -11.65 6.76 99.48 0.67 -10.98 16 22 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 23 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 2.33 8.14 -2.21 -0.02 2.32 16 26 H 0.00 0.16 8.17 -2.23 -0.02 0.14 16 27 H 0.05 2.03 7.76 -2.00 -0.02 2.01 16 28 H 0.05 2.02 8.21 -1.75 -0.01 2.01 16 29 H 0.02 0.61 8.31 -1.10 -0.01 0.60 16 30 H 0.37 7.86 8.86 -74.05 -0.66 7.20 16 31 H 0.07 2.08 8.00 -1.75 -0.01 2.06 16 32 H 0.04 1.62 6.97 -1.98 -0.01 1.60 16 33 H 0.09 2.28 8.17 -2.21 -0.02 2.26 16 34 H 0.01 0.30 8.17 -2.22 -0.02 0.28 16 35 H 0.01 0.59 5.41 -2.17 -0.01 0.58 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -63.66 266.89 2.40 -61.27 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.40 Total: 9.10 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 3.01 Total: -23.79 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -1.25 Total: -76.17 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -1.61 Total: -17.31 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.84 Total: 46.90 kcal Total: -63.66 2.40 -61.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.415 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds