Wall clock time and date at job start Mon Mar 30 2020 03:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21287 * 120.00615 * 2 1 4 4 N 1.34776 * 120.00270 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.62625 * 4.97896 * 4 2 1 6 6 C 1.53195 * 108.77516 * 233.58980 * 5 4 2 7 7 C 1.53041 * 109.31069 * 305.36030 * 6 5 4 8 8 C 1.53048 * 109.53609 * 61.36789 * 7 6 5 9 9 C 1.46923 * 120.63637 * 184.95602 * 4 2 1 10 10 H 1.09000 * 109.70582 * 246.26915 * 9 4 2 11 11 C 1.53006 * 109.58561 * 6.62743 * 9 4 2 12 12 H 1.09001 * 109.46999 * 43.47064 * 11 9 4 13 13 C 1.52996 * 109.47128 * 163.47333 * 11 9 4 14 14 C 1.50699 * 109.46810 * 283.47197 * 11 9 4 15 15 H 1.08003 * 120.00003 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00101 * 179.97438 * 14 11 9 17 17 N 1.31521 * 119.99515 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00327 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46907 * 120.00313 * 18 16 14 21 21 H 1.48493 * 109.47176 * 240.00441 * 18 16 14 22 22 H 1.08996 * 109.47050 * 240.00104 * 1 2 3 23 23 H 1.08997 * 109.46897 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47381 * 119.99676 * 1 2 3 25 25 H 1.09003 * 109.59042 * 113.80529 * 5 4 2 26 26 H 1.08997 * 109.58697 * 353.37276 * 5 4 2 27 27 H 1.09001 * 109.49650 * 185.41388 * 6 5 4 28 28 H 1.09003 * 109.50046 * 65.31266 * 6 5 4 29 29 H 1.08996 * 109.46788 * 301.34982 * 7 6 5 30 30 H 1.09000 * 109.44929 * 181.37678 * 7 6 5 31 31 H 1.08997 * 109.49794 * 178.68092 * 8 7 6 32 32 H 1.09005 * 109.52170 * 58.60016 * 8 7 6 33 33 H 1.09005 * 109.47248 * 299.99917 * 13 11 9 34 34 H 1.09001 * 109.47400 * 59.99977 * 13 11 9 35 35 H 1.08999 * 109.47371 * 179.97438 * 13 11 9 36 36 H 0.97000 * 119.99515 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4644 -2.4451 -0.1108 6 6 1.8850 -3.3483 1.0529 7 6 3.4096 -3.4815 1.0647 8 6 4.0422 -2.1031 1.2699 9 6 3.6459 -1.1858 0.1087 10 1 4.0788 -1.5620 -0.8182 11 6 4.1584 0.2308 0.3762 12 1 3.5263 0.7108 1.1233 13 6 5.5971 0.1637 0.8924 14 6 4.1199 1.0286 -0.9017 15 1 3.7650 0.5711 -1.8134 16 6 4.5367 2.3428 -0.9069 17 7 4.9684 2.9000 0.2035 18 14 4.4884 3.3319 -2.4907 19 1 3.9653 2.4812 -3.5898 20 1 3.6016 4.5096 -2.3120 21 1 5.8592 3.7913 -2.8295 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 1.7173 -2.9255 -1.0560 26 1 0.3901 -2.2669 -0.0651 27 1 1.4347 -4.3333 0.9301 28 1 1.5509 -2.9096 1.9931 29 1 3.7452 -3.8972 0.1147 30 1 3.7098 -4.1434 1.8770 31 1 5.1272 -2.2018 1.3016 32 1 3.6881 -1.6758 2.2082 33 1 5.6249 -0.4133 1.8168 34 1 6.2292 -0.3162 0.1453 35 1 5.9623 1.1729 1.0826 36 1 5.2613 3.8247 0.2000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260381044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:14 Heat of formation + Delta-G solvation = -17.674132 kcal Electronic energy + Delta-G solvation = -16982.624608 eV Core-core repulsion = 14467.600472 eV Total energy + Delta-G solvation = -2515.024136 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.61086 -36.49485 -34.29997 -32.20011 -31.36841 -28.87172 -28.25655 -25.02807 -24.12994 -22.88773 -20.34329 -19.75853 -18.07234 -16.14578 -15.78015 -15.13117 -14.44538 -14.31712 -13.96209 -13.55197 -13.20011 -12.80619 -12.62576 -12.08804 -11.99010 -11.72325 -11.43385 -11.36312 -10.85995 -10.76071 -10.70328 -10.44525 -10.36277 -10.23004 -10.09673 -9.83410 -9.03523 -8.60029 -8.03565 -7.68163 -7.41293 -5.62780 -3.48700 3.47014 3.54666 3.57789 3.76681 3.91203 4.72342 5.06346 5.18362 5.20850 5.49993 5.63280 5.68237 5.73764 5.76821 5.80184 5.89877 6.01622 6.14605 6.17699 6.28947 6.41096 6.44106 6.50295 6.84116 6.88611 7.06885 7.18021 7.41684 7.58137 8.00936 8.35339 8.39333 8.47530 8.75593 9.29279 9.46901 9.96116 11.46180 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031570 B = 0.010959 C = 0.009085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.712517 B = 2554.452180 C = 3081.287806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.457 3.543 3 O -0.436 6.436 4 N -0.615 5.615 5 C 0.112 3.888 6 C -0.133 4.133 7 C -0.119 4.119 8 C -0.131 4.131 9 C 0.156 3.844 10 H 0.052 0.948 11 C 0.047 3.953 12 H 0.055 0.945 13 C -0.144 4.144 14 C -0.432 4.432 15 H 0.041 0.959 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.881 3.119 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.291 1.291 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.008 0.992 34 H 0.020 0.980 35 H 0.083 0.917 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 -12.121 1.581 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.243 3.757 3 O -0.305 6.305 4 N -0.352 5.352 5 C -0.012 4.012 6 C -0.172 4.172 7 C -0.157 4.157 8 C -0.169 4.169 9 C 0.054 3.946 10 H 0.070 0.930 11 C 0.029 3.971 12 H 0.072 0.928 13 C -0.202 4.202 14 C -0.470 4.470 15 H 0.059 0.941 16 C -0.141 4.141 17 N -0.539 5.539 18 Si 0.710 3.290 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.217 1.217 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.102 0.898 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.582 -11.317 1.622 13.192 hybrid contribution -0.192 0.370 -0.959 1.045 sum -6.774 -10.947 0.663 12.891 Atomic orbital electron populations 1.21998 0.95095 1.03870 1.02146 1.20594 0.89190 0.84880 0.80995 1.91268 1.66702 1.30614 1.41937 1.47946 1.07119 1.04665 1.75516 1.21522 0.96614 0.85525 0.97564 1.21908 0.96859 0.99085 0.99303 1.21546 0.95033 0.97956 1.01173 1.22094 1.00477 0.94399 0.99917 1.21513 0.78149 0.99467 0.95496 0.93042 1.19222 0.91931 0.87613 0.98354 0.92780 1.22019 0.99817 1.02398 0.95967 1.20769 1.36904 0.95901 0.93463 0.94116 1.24693 0.96736 0.97432 0.95237 1.69868 1.45933 1.12485 1.25623 0.86716 0.76926 0.80568 0.84741 1.20485 1.21560 1.21747 0.91034 0.90137 0.91242 0.92608 0.90644 0.91836 0.91875 0.92328 0.92693 0.91053 0.92228 0.97298 0.96094 0.89829 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 8.67 36.00 0.31 -2.27 16 2 C 0.46 9.53 7.46 -10.99 -0.08 9.45 16 3 O -0.44 -11.59 10.67 5.55 0.06 -11.53 16 4 N -0.61 -11.60 2.97 -165.22 -0.49 -12.10 16 5 C 0.11 1.54 6.35 -3.71 -0.02 1.51 16 6 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 7 C -0.12 -1.61 5.88 -26.69 -0.16 -1.77 16 8 C -0.13 -2.26 4.26 -26.61 -0.11 -2.37 16 9 C 0.16 3.27 2.56 -67.60 -0.17 3.10 16 10 H 0.05 1.12 8.03 -51.93 -0.42 0.71 16 11 C 0.05 1.22 1.51 -91.77 -0.14 1.08 16 12 H 0.05 1.59 6.08 -51.93 -0.32 1.28 16 13 C -0.14 -3.57 8.13 37.16 0.30 -3.27 16 14 C -0.43 -12.45 5.30 -34.44 -0.18 -12.63 16 15 H 0.04 1.20 7.74 -52.48 -0.41 0.80 16 16 C 0.06 1.70 5.19 -17.82 -0.09 1.60 16 17 N -0.90 -27.53 11.32 55.43 0.63 -26.90 16 18 Si 0.88 23.24 29.54 -169.99 -5.02 18.22 16 19 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 22 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 23 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 24 H 0.07 0.89 7.74 -51.93 -0.40 0.49 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.87 5.93 -51.93 -0.31 0.56 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.22 6.73 -51.93 -0.35 0.87 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.01 0.18 6.46 -51.93 -0.34 -0.16 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 2.34 6.07 -51.93 -0.32 2.02 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -32.74 273.32 -6.99 -39.73 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -5.78 Total: -4.18 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.51 Total: -7.36 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.14 Total: -38.99 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.06 Total: -11.53 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.74 -6.99 -39.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.056 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds