Wall clock time and date at job start Mon Mar 30 2020 03:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21287 * 120.00615 * 2 1 4 4 N 1.34776 * 120.00270 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.62625 * 4.97896 * 4 2 1 6 6 C 1.53195 * 108.77516 * 233.58980 * 5 4 2 7 7 C 1.53041 * 109.31069 * 305.36030 * 6 5 4 8 8 C 1.53048 * 109.53609 * 61.36789 * 7 6 5 9 9 C 1.46923 * 120.63637 * 184.95602 * 4 2 1 10 10 H 1.09000 * 109.70582 * 246.26915 * 9 4 2 11 11 C 1.53006 * 109.58561 * 6.62743 * 9 4 2 12 12 H 1.09001 * 109.46999 * 43.47064 * 11 9 4 13 13 C 1.52996 * 109.47128 * 163.47333 * 11 9 4 14 14 C 1.50699 * 109.46810 * 283.47197 * 11 9 4 15 15 H 1.08003 * 120.00003 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00101 * 179.97438 * 14 11 9 17 17 N 1.31521 * 119.99515 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00327 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46907 * 120.00313 * 18 16 14 21 21 H 1.48493 * 109.47176 * 240.00441 * 18 16 14 22 22 H 1.08996 * 109.47050 * 240.00104 * 1 2 3 23 23 H 1.08997 * 109.46897 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47381 * 119.99676 * 1 2 3 25 25 H 1.09003 * 109.59042 * 113.80529 * 5 4 2 26 26 H 1.08997 * 109.58697 * 353.37276 * 5 4 2 27 27 H 1.09001 * 109.49650 * 185.41388 * 6 5 4 28 28 H 1.09003 * 109.50046 * 65.31266 * 6 5 4 29 29 H 1.08996 * 109.46788 * 301.34982 * 7 6 5 30 30 H 1.09000 * 109.44929 * 181.37678 * 7 6 5 31 31 H 1.08997 * 109.49794 * 178.68092 * 8 7 6 32 32 H 1.09005 * 109.52170 * 58.60016 * 8 7 6 33 33 H 1.09005 * 109.47248 * 299.99917 * 13 11 9 34 34 H 1.09001 * 109.47400 * 59.99977 * 13 11 9 35 35 H 1.08999 * 109.47371 * 179.97438 * 13 11 9 36 36 H 0.97000 * 119.99515 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4644 -2.4451 -0.1108 6 6 1.8850 -3.3483 1.0529 7 6 3.4096 -3.4815 1.0647 8 6 4.0422 -2.1031 1.2699 9 6 3.6459 -1.1858 0.1087 10 1 4.0788 -1.5620 -0.8182 11 6 4.1584 0.2308 0.3762 12 1 3.5263 0.7108 1.1233 13 6 5.5971 0.1637 0.8924 14 6 4.1199 1.0286 -0.9017 15 1 3.7650 0.5711 -1.8134 16 6 4.5367 2.3428 -0.9069 17 7 4.9684 2.9000 0.2035 18 14 4.4884 3.3319 -2.4907 19 1 3.9653 2.4812 -3.5898 20 1 3.6016 4.5096 -2.3120 21 1 5.8592 3.7913 -2.8295 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 1.7173 -2.9255 -1.0560 26 1 0.3901 -2.2669 -0.0651 27 1 1.4347 -4.3333 0.9301 28 1 1.5509 -2.9096 1.9931 29 1 3.7452 -3.8972 0.1147 30 1 3.7098 -4.1434 1.8770 31 1 5.1272 -2.2018 1.3016 32 1 3.6881 -1.6758 2.2082 33 1 5.6249 -0.4133 1.8168 34 1 6.2292 -0.3162 0.1453 35 1 5.9623 1.1729 1.0826 36 1 5.2613 3.8247 0.2000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:13 Heat of formation + Delta-G solvation = -39.120568 kcal Electronic energy + Delta-G solvation = -16983.554596 eV Core-core repulsion = 14467.600472 eV Total energy + Delta-G solvation = -2515.954123 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16428 -37.99920 -36.15956 -33.71489 -33.19787 -30.26368 -29.84966 -27.13305 -25.55296 -24.42554 -21.65395 -21.50346 -19.61503 -18.27295 -17.26540 -16.67835 -16.40915 -15.88912 -15.15274 -15.00897 -14.70550 -14.36297 -14.09825 -13.76806 -13.54072 -13.37149 -13.02479 -12.84428 -12.77870 -12.57949 -12.27091 -12.17489 -12.08246 -11.77802 -11.61403 -11.37376 -10.84582 -10.71695 -10.23079 -9.41810 -9.07065 -7.86247 -5.76055 1.34676 1.37048 1.45676 2.19326 2.49218 2.54028 3.47950 3.93737 4.04900 4.12851 4.25339 4.35858 4.53303 4.53844 4.66491 4.73346 4.78814 4.91369 4.99541 5.06805 5.11183 5.12726 5.19175 5.24209 5.25672 5.34488 5.46406 5.56825 5.73668 5.87687 6.24574 6.37043 6.53803 6.97734 7.12904 7.68867 7.89067 9.21911 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031570 B = 0.010959 C = 0.009085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.712517 B = 2554.452180 C = 3081.287806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.448 3.552 3 O -0.513 6.513 4 N -0.616 5.616 5 C 0.103 3.897 6 C -0.128 4.128 7 C -0.115 4.115 8 C -0.124 4.124 9 C 0.157 3.843 10 H 0.040 0.960 11 C 0.049 3.951 12 H 0.015 0.985 13 C -0.134 4.134 14 C -0.423 4.423 15 H 0.025 0.975 16 C 0.001 3.999 17 N -0.929 5.929 18 Si 0.933 3.067 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.282 1.282 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 -15.049 1.296 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.236 3.764 3 O -0.387 6.387 4 N -0.352 5.352 5 C -0.019 4.019 6 C -0.166 4.166 7 C -0.153 4.153 8 C -0.162 4.162 9 C 0.054 3.946 10 H 0.059 0.941 11 C 0.031 3.969 12 H 0.033 0.967 13 C -0.193 4.193 14 C -0.462 4.462 15 H 0.043 0.957 16 C -0.193 4.193 17 N -0.574 5.574 18 Si 0.762 3.238 19 H -0.200 1.200 20 H -0.221 1.221 21 H -0.209 1.209 22 H 0.122 0.878 23 H 0.091 0.909 24 H 0.119 0.881 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.295 -14.312 1.322 16.595 hybrid contribution 0.253 1.178 -0.853 1.477 sum -8.042 -13.133 0.469 15.407 Atomic orbital electron populations 1.21904 0.90207 1.04485 1.05125 1.21675 0.91675 0.84320 0.78732 1.91236 1.68793 1.32979 1.45719 1.48135 1.06472 1.06487 1.74152 1.21936 0.97815 0.83195 0.98969 1.21903 0.95815 1.00571 0.98267 1.21535 0.95899 0.95344 1.02480 1.21977 1.00736 0.96075 0.97402 1.21227 0.79915 0.96967 0.96508 0.94150 1.19027 0.91696 0.90240 0.95952 0.96697 1.21855 0.99400 1.00709 0.97296 1.20937 1.35135 0.96238 0.93913 0.95704 1.25341 0.97478 0.98655 0.97817 1.70014 1.47783 1.12388 1.27190 0.85873 0.77035 0.79065 0.81816 1.20015 1.22056 1.20860 0.87788 0.90935 0.88109 0.91514 0.87669 0.87995 0.92187 0.91631 0.90368 0.91268 0.93473 0.94704 0.95678 0.93299 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 8.67 71.23 0.62 -3.71 16 2 C 0.45 18.43 7.46 87.66 0.65 19.08 16 3 O -0.51 -28.25 10.67 -3.05 -0.03 -28.28 16 4 N -0.62 -22.32 2.97 -795.02 -2.36 -24.68 16 5 C 0.10 2.39 6.35 86.36 0.55 2.94 16 6 C -0.13 -2.49 6.08 30.67 0.19 -2.31 16 7 C -0.12 -2.66 5.88 30.62 0.18 -2.48 16 8 C -0.12 -4.07 4.26 30.67 0.13 -3.94 16 9 C 0.16 6.54 2.56 44.98 0.12 6.65 16 10 H 0.04 1.75 8.03 -2.39 -0.02 1.74 16 11 C 0.05 2.64 1.51 -11.54 -0.02 2.62 16 12 H 0.02 0.93 6.08 -2.39 -0.01 0.92 16 13 C -0.13 -6.87 8.13 71.98 0.59 -6.28 16 14 C -0.42 -25.28 5.30 25.60 0.14 -25.15 16 15 H 0.02 1.51 7.74 -2.91 -0.02 1.49 16 16 C 0.00 0.07 5.19 84.65 0.44 0.51 16 17 N -0.93 -59.70 11.32 21.45 0.24 -59.46 16 18 Si 0.93 49.25 29.54 68.60 2.03 51.27 16 19 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 20 H -0.29 -15.57 7.11 99.48 0.71 -14.87 16 21 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 22 H 0.10 2.19 7.90 -2.39 -0.02 2.17 16 23 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 24 H 0.10 2.16 7.74 -2.39 -0.02 2.14 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.11 1.84 5.93 -2.39 -0.01 1.83 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 2.28 6.73 -2.39 -0.02 2.26 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.03 1.54 6.46 -2.38 -0.02 1.52 16 34 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 2.84 6.07 -2.39 -0.01 2.83 16 36 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -76.41 273.32 4.49 -71.92 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.04 Total: 1.30 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 3.57 Total: -12.07 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -2.12 Total: -84.14 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.03 Total: -28.28 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.03 Total: 51.27 kcal Total: -76.41 4.49 -71.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.796 kcal (2) G-P(sol) polarization free energy of solvation -76.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds