Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 120.00080 * 2 1 4 4 N 1.34777 * 119.99613 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.63234 * 6.80968 * 4 2 1 6 6 C 1.53196 * 108.77400 * 126.39834 * 5 4 2 7 7 C 1.53037 * 109.31488 * 54.63177 * 6 5 4 8 8 C 1.53037 * 109.54192 * 298.63957 * 7 6 5 9 9 C 1.46927 * 120.62641 * 186.81757 * 4 2 1 10 10 H 1.09008 * 109.70440 * 113.75132 * 9 4 2 11 11 C 1.52996 * 109.59041 * 353.39037 * 9 4 2 12 12 H 1.08998 * 109.47180 * 310.34224 * 11 9 4 13 13 C 1.52998 * 109.47131 * 190.33965 * 11 9 4 14 14 C 1.50702 * 109.46853 * 70.34170 * 11 9 4 15 15 H 1.07995 * 120.00162 * 5.06426 * 14 11 9 16 16 C 1.37874 * 119.99657 * 185.06306 * 14 11 9 17 17 N 1.31516 * 120.00256 * 5.12273 * 16 14 11 18 18 Si 1.86800 * 119.99780 * 185.11702 * 16 14 11 19 19 H 1.48501 * 109.47392 * 85.00360 * 18 16 14 20 20 H 1.48502 * 109.47371 * 324.99906 * 18 16 14 21 21 H 1.48504 * 109.47014 * 205.00162 * 18 16 14 22 22 H 1.08995 * 109.47214 * 185.57324 * 1 2 3 23 23 H 1.08993 * 109.47076 * 305.57692 * 1 2 3 24 24 H 1.09002 * 109.46944 * 65.57498 * 1 2 3 25 25 H 1.09001 * 109.58428 * 6.61162 * 5 4 2 26 26 H 1.09001 * 109.70361 * 246.25213 * 5 4 2 27 27 H 1.09004 * 109.49482 * 294.68634 * 6 5 4 28 28 H 1.08993 * 109.50141 * 174.58985 * 6 5 4 29 29 H 1.08998 * 109.45851 * 178.61440 * 7 6 5 30 30 H 1.09001 * 109.45900 * 58.65799 * 7 6 5 31 31 H 1.08999 * 109.49909 * 301.41261 * 8 7 6 32 32 H 1.09002 * 109.52562 * 181.33040 * 8 7 6 33 33 H 1.09004 * 109.47106 * 65.07579 * 13 11 9 34 34 H 1.09002 * 109.47162 * 185.07047 * 13 11 9 35 35 H 1.08999 * 109.47417 * 305.06891 * 13 11 9 36 36 H 0.96997 * 120.00203 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4679 -2.4431 -0.1510 6 6 2.0959 -3.2253 -1.3089 7 6 3.5997 -3.3705 -1.0649 8 6 4.2459 -1.9842 -1.0117 9 6 3.6423 -1.1879 0.1496 10 1 3.9080 -1.6619 1.0946 11 6 4.1809 0.2439 0.1244 12 1 3.7690 0.7719 -0.7355 13 6 5.7070 0.2129 0.0210 14 6 3.7775 0.9545 1.3907 15 1 3.2665 0.4142 2.1738 16 6 4.0608 2.2945 1.5493 17 7 4.5917 2.9762 0.5579 18 14 3.6906 3.1416 3.1725 19 1 4.8256 2.9368 4.1080 20 1 2.4544 2.5661 3.7606 21 1 3.4975 4.5954 2.9394 22 1 -0.3633 -1.0227 0.0998 23 1 -0.3633 0.5979 0.8358 24 1 -0.3633 0.4250 -0.9357 25 1 0.4169 -2.2512 -0.3672 26 1 1.5520 -3.0218 0.7689 27 1 1.9291 -2.6888 -2.2430 28 1 1.6402 -4.2135 -1.3700 29 1 4.0450 -3.9479 -1.8751 30 1 3.7660 -3.8851 -0.1185 31 1 4.0588 -1.4594 -1.9486 32 1 5.3205 -2.0887 -0.8615 33 1 5.9976 -0.2201 -0.9362 34 1 6.0968 1.2283 0.0938 35 1 6.1140 -0.3914 0.8318 36 1 4.7907 3.9190 0.6693 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260381048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -12.984221 kcal Electronic energy + Delta-G solvation = -17021.418772 eV Core-core repulsion = 14506.598006 eV Total energy + Delta-G solvation = -2514.820766 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55288 -36.40200 -34.27303 -32.15542 -31.39023 -28.76806 -28.32896 -25.00751 -24.11915 -22.84053 -20.30758 -19.79221 -18.03608 -16.13543 -15.75658 -15.11452 -14.35845 -14.34752 -13.98382 -13.49012 -13.18580 -12.79512 -12.59086 -12.05901 -12.02052 -11.55102 -11.48980 -11.18843 -10.83317 -10.74597 -10.63934 -10.47845 -10.38850 -10.25213 -10.08576 -9.96521 -8.99292 -8.64683 -8.10037 -7.46293 -7.39331 -5.68224 -3.49835 3.44375 3.51396 3.53804 3.90125 3.99735 4.68376 5.08467 5.20340 5.25236 5.55308 5.65815 5.70541 5.73889 5.77870 5.89900 6.03780 6.04478 6.17542 6.22843 6.36999 6.45358 6.46727 6.51347 6.82358 6.89492 7.02264 7.17188 7.38714 7.58279 7.94933 8.28079 8.37895 8.58302 8.70892 9.28626 9.58049 9.91461 11.42526 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.011188 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.465451 B = 2502.020787 C = 3038.751760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.446 3.554 3 O -0.425 6.425 4 N -0.615 5.615 5 C 0.109 3.891 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.132 4.132 9 C 0.159 3.841 10 H 0.049 0.951 11 C 0.045 3.955 12 H 0.065 0.935 13 C -0.139 4.139 14 C -0.441 4.441 15 H 0.040 0.960 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.877 3.123 19 H -0.286 1.286 20 H -0.280 1.280 21 H -0.290 1.290 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.011 0.989 34 H 0.069 0.931 35 H 0.019 0.981 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -11.754 -3.097 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.233 3.767 3 O -0.294 6.294 4 N -0.354 5.354 5 C -0.015 4.015 6 C -0.171 4.171 7 C -0.156 4.156 8 C -0.170 4.170 9 C 0.056 3.944 10 H 0.067 0.933 11 C 0.026 3.974 12 H 0.082 0.918 13 C -0.197 4.197 14 C -0.480 4.480 15 H 0.058 0.942 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.707 3.293 19 H -0.213 1.213 20 H -0.206 1.206 21 H -0.216 1.216 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.317 -10.922 -3.132 12.545 hybrid contribution -0.341 0.303 1.030 1.126 sum -5.658 -10.619 -2.102 12.215 Atomic orbital electron populations 1.22020 0.95400 1.02427 1.03502 1.20382 0.89033 0.84659 0.82643 1.91191 1.66663 1.30730 1.40829 1.47812 1.07184 1.04676 1.75705 1.21587 0.96404 0.86105 0.97388 1.21906 0.96509 0.99536 0.99173 1.21528 0.95190 0.97927 1.00965 1.22083 0.99870 0.94781 1.00277 1.21456 0.78123 0.99978 0.94823 0.93339 1.19306 0.90361 0.87788 0.99902 0.91754 1.21946 1.00245 1.01670 0.95841 1.20750 1.33478 0.94166 0.99582 0.94171 1.24694 0.96258 0.97114 0.95447 1.69918 1.44734 1.07791 1.30120 0.86857 0.78209 0.78947 0.85336 1.21278 1.20585 1.21640 0.91695 0.90321 0.90580 0.90263 0.92864 0.91877 0.91910 0.92772 0.92401 0.92187 0.91312 0.97026 0.91175 0.96140 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.99 36.01 0.36 -2.40 16 2 C 0.45 9.52 7.31 -10.98 -0.08 9.44 16 3 O -0.43 -11.41 10.44 5.56 0.06 -11.35 16 4 N -0.62 -11.81 2.97 -165.21 -0.49 -12.30 16 5 C 0.11 1.54 6.23 -3.71 -0.02 1.51 16 6 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 7 C -0.12 -1.63 5.88 -26.69 -0.16 -1.78 16 8 C -0.13 -2.29 4.53 -26.61 -0.12 -2.41 16 9 C 0.16 3.33 2.48 -67.60 -0.17 3.16 16 10 H 0.05 1.05 8.11 -51.92 -0.42 0.63 16 11 C 0.04 1.15 1.32 -91.77 -0.12 1.03 16 12 H 0.06 1.90 6.19 -51.93 -0.32 1.58 16 13 C -0.14 -3.40 8.26 37.16 0.31 -3.09 16 14 C -0.44 -12.57 5.17 -34.44 -0.18 -12.75 16 15 H 0.04 1.17 7.75 -52.49 -0.41 0.76 16 16 C 0.06 1.91 4.84 -17.82 -0.09 1.82 16 17 N -0.89 -27.05 11.92 55.43 0.66 -26.38 16 18 Si 0.88 22.85 29.54 -169.99 -5.02 17.83 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 22 H 0.06 0.82 5.36 -51.93 -0.28 0.55 16 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.08 0.95 5.30 -51.93 -0.28 0.67 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.17 6.80 -51.93 -0.35 0.82 16 33 H 0.01 0.24 6.77 -51.93 -0.35 -0.11 16 34 H 0.07 1.92 6.59 -51.93 -0.34 1.58 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -32.25 272.76 -6.80 -39.05 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -5.69 Total: -3.65 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.43 Total: -7.30 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.17 Total: -38.69 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.06 Total: -11.35 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.25 -6.80 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.066 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds