Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 120.00080 * 2 1 4 4 N 1.34777 * 119.99613 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.63234 * 6.80968 * 4 2 1 6 6 C 1.53196 * 108.77400 * 126.39834 * 5 4 2 7 7 C 1.53037 * 109.31488 * 54.63177 * 6 5 4 8 8 C 1.53037 * 109.54192 * 298.63957 * 7 6 5 9 9 C 1.46927 * 120.62641 * 186.81757 * 4 2 1 10 10 H 1.09008 * 109.70440 * 113.75132 * 9 4 2 11 11 C 1.52996 * 109.59041 * 353.39037 * 9 4 2 12 12 H 1.08998 * 109.47180 * 310.34224 * 11 9 4 13 13 C 1.52998 * 109.47131 * 190.33965 * 11 9 4 14 14 C 1.50702 * 109.46853 * 70.34170 * 11 9 4 15 15 H 1.07995 * 120.00162 * 5.06426 * 14 11 9 16 16 C 1.37874 * 119.99657 * 185.06306 * 14 11 9 17 17 N 1.31516 * 120.00256 * 5.12273 * 16 14 11 18 18 Si 1.86800 * 119.99780 * 185.11702 * 16 14 11 19 19 H 1.48501 * 109.47392 * 85.00360 * 18 16 14 20 20 H 1.48502 * 109.47371 * 324.99906 * 18 16 14 21 21 H 1.48504 * 109.47014 * 205.00162 * 18 16 14 22 22 H 1.08995 * 109.47214 * 185.57324 * 1 2 3 23 23 H 1.08993 * 109.47076 * 305.57692 * 1 2 3 24 24 H 1.09002 * 109.46944 * 65.57498 * 1 2 3 25 25 H 1.09001 * 109.58428 * 6.61162 * 5 4 2 26 26 H 1.09001 * 109.70361 * 246.25213 * 5 4 2 27 27 H 1.09004 * 109.49482 * 294.68634 * 6 5 4 28 28 H 1.08993 * 109.50141 * 174.58985 * 6 5 4 29 29 H 1.08998 * 109.45851 * 178.61440 * 7 6 5 30 30 H 1.09001 * 109.45900 * 58.65799 * 7 6 5 31 31 H 1.08999 * 109.49909 * 301.41261 * 8 7 6 32 32 H 1.09002 * 109.52562 * 181.33040 * 8 7 6 33 33 H 1.09004 * 109.47106 * 65.07579 * 13 11 9 34 34 H 1.09002 * 109.47162 * 185.07047 * 13 11 9 35 35 H 1.08999 * 109.47417 * 305.06891 * 13 11 9 36 36 H 0.96997 * 120.00203 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4679 -2.4431 -0.1510 6 6 2.0959 -3.2253 -1.3089 7 6 3.5997 -3.3705 -1.0649 8 6 4.2459 -1.9842 -1.0117 9 6 3.6423 -1.1879 0.1496 10 1 3.9080 -1.6619 1.0946 11 6 4.1809 0.2439 0.1244 12 1 3.7690 0.7719 -0.7355 13 6 5.7070 0.2129 0.0210 14 6 3.7775 0.9545 1.3907 15 1 3.2665 0.4142 2.1738 16 6 4.0608 2.2945 1.5493 17 7 4.5917 2.9762 0.5579 18 14 3.6906 3.1416 3.1725 19 1 4.8256 2.9368 4.1080 20 1 2.4544 2.5661 3.7606 21 1 3.4975 4.5954 2.9394 22 1 -0.3633 -1.0227 0.0998 23 1 -0.3633 0.5979 0.8358 24 1 -0.3633 0.4250 -0.9357 25 1 0.4169 -2.2512 -0.3672 26 1 1.5520 -3.0218 0.7689 27 1 1.9291 -2.6888 -2.2430 28 1 1.6402 -4.2135 -1.3700 29 1 4.0450 -3.9479 -1.8751 30 1 3.7660 -3.8851 -0.1185 31 1 4.0588 -1.4594 -1.9486 32 1 5.3205 -2.0887 -0.8615 33 1 5.9976 -0.2201 -0.9362 34 1 6.0968 1.2283 0.0938 35 1 6.1140 -0.3914 0.8318 36 1 4.7907 3.9190 0.6693 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -34.005745 kcal Electronic energy + Delta-G solvation = -17022.330334 eV Core-core repulsion = 14506.598006 eV Total energy + Delta-G solvation = -2515.732328 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13400 -37.93133 -36.12454 -33.70177 -33.21025 -30.25781 -29.87202 -27.09347 -25.56376 -24.37684 -21.67529 -21.51263 -19.60103 -18.24623 -17.25364 -16.65334 -16.40676 -15.84667 -15.23471 -14.96276 -14.72407 -14.35799 -14.10424 -13.70712 -13.55284 -13.43656 -12.94754 -12.79553 -12.64858 -12.58794 -12.33852 -12.22818 -12.12800 -11.71929 -11.62627 -11.33942 -10.79653 -10.72777 -10.24735 -9.25868 -9.04623 -7.88377 -5.73590 1.35983 1.36945 1.44551 2.26309 2.53493 2.54957 3.50923 3.95735 4.03502 4.13536 4.25832 4.37396 4.49140 4.56451 4.65699 4.75287 4.82311 4.91961 4.97902 5.06492 5.12028 5.15075 5.20589 5.24894 5.26534 5.33148 5.44877 5.57200 5.72153 5.88942 6.20667 6.37841 6.51583 7.03539 7.16391 7.68247 7.96565 9.22447 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.011188 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.465451 B = 2502.020787 C = 3038.751760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.440 3.560 3 O -0.499 6.499 4 N -0.617 5.617 5 C 0.100 3.900 6 C -0.128 4.128 7 C -0.114 4.114 8 C -0.125 4.125 9 C 0.159 3.841 10 H 0.043 0.957 11 C 0.047 3.953 12 H 0.022 0.978 13 C -0.129 4.129 14 C -0.433 4.433 15 H 0.027 0.973 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.929 3.071 19 H -0.277 1.277 20 H -0.279 1.279 21 H -0.293 1.293 22 H 0.105 0.895 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 -14.795 -3.040 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.229 3.771 3 O -0.373 6.373 4 N -0.354 5.354 5 C -0.022 4.022 6 C -0.166 4.166 7 C -0.151 4.151 8 C -0.164 4.164 9 C 0.056 3.944 10 H 0.061 0.939 11 C 0.029 3.971 12 H 0.040 0.960 13 C -0.188 4.188 14 C -0.472 4.472 15 H 0.045 0.955 16 C -0.185 4.185 17 N -0.564 5.564 18 Si 0.758 3.242 19 H -0.203 1.203 20 H -0.204 1.204 21 H -0.219 1.219 22 H 0.123 0.877 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.909 -14.031 -3.063 15.937 hybrid contribution 0.065 1.126 0.955 1.478 sum -6.843 -12.905 -2.108 14.759 Atomic orbital electron populations 1.21959 0.90878 1.05146 1.04235 1.21454 0.91405 0.84301 0.79988 1.91190 1.68621 1.32979 1.44486 1.48026 1.06734 1.06409 1.74258 1.21994 0.97424 0.83795 0.98975 1.21901 0.95628 1.01175 0.97880 1.21518 0.95918 0.95244 1.02462 1.21974 1.00121 0.96660 0.97605 1.21212 0.79833 0.97209 0.96184 0.93899 1.19093 0.90709 0.90353 0.96977 0.95990 1.21788 0.99719 0.99830 0.97426 1.20905 1.32061 0.94268 0.99976 0.95485 1.25321 0.97076 0.98022 0.98128 1.70063 1.47052 1.07533 1.31791 0.86015 0.78187 0.77747 0.82289 1.20280 1.20397 1.21910 0.87704 0.90474 0.89167 0.87599 0.91355 0.92581 0.87995 0.90502 0.91433 0.93836 0.91263 0.94800 0.94683 0.95093 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.76 9.99 71.24 0.71 -4.05 16 2 C 0.44 18.56 7.31 87.66 0.64 19.20 16 3 O -0.50 -27.71 10.44 -3.02 -0.03 -27.75 16 4 N -0.62 -22.70 2.97 -794.99 -2.36 -25.06 16 5 C 0.10 2.39 6.23 86.36 0.54 2.92 16 6 C -0.13 -2.61 6.08 30.67 0.19 -2.42 16 7 C -0.11 -2.67 5.88 30.62 0.18 -2.49 16 8 C -0.13 -4.16 4.53 30.67 0.14 -4.02 16 9 C 0.16 6.58 2.48 44.98 0.11 6.70 16 10 H 0.04 1.82 8.11 -2.38 -0.02 1.80 16 11 C 0.05 2.50 1.32 -11.54 -0.02 2.49 16 12 H 0.02 1.37 6.19 -2.39 -0.01 1.36 16 13 C -0.13 -6.50 8.26 71.98 0.59 -5.91 16 14 C -0.43 -25.45 5.17 25.60 0.13 -25.32 16 15 H 0.03 1.60 7.75 -2.91 -0.02 1.58 16 16 C 0.01 0.62 4.84 84.65 0.41 1.03 16 17 N -0.92 -59.08 11.92 21.45 0.26 -58.82 16 18 Si 0.93 48.31 29.54 68.60 2.03 50.34 16 19 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.29 -15.19 7.11 99.48 0.71 -14.49 16 22 H 0.10 2.17 5.36 -2.39 -0.01 2.16 16 23 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.11 1.96 5.30 -2.39 -0.01 1.95 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.25 8.14 -2.38 -0.02 1.24 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 2.26 6.80 -2.39 -0.02 2.24 16 33 H 0.03 1.49 6.77 -2.39 -0.02 1.47 16 34 H 0.03 1.98 6.59 -2.39 -0.02 1.97 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -75.04 272.76 4.56 -70.48 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 1.05 Total: 2.68 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 3.63 Total: -11.87 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -2.11 Total: -83.88 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.03 Total: -27.75 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -75.04 4.56 -70.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.471 kcal (2) G-P(sol) polarization free energy of solvation -75.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds