Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21288 * 120.00144 * 2 1 4 4 N 1.34782 * 120.00019 * 179.97438 * 2 1 3 5 5 C 1.46924 * 120.62980 * 6.02354 * 4 2 1 6 6 C 1.53186 * 108.77428 * 233.58856 * 5 4 2 7 7 C 1.53033 * 109.31431 * 305.36333 * 6 5 4 8 8 C 1.53077 * 109.65747 * 61.30357 * 7 6 5 9 9 C 1.46928 * 120.62784 * 186.00445 * 4 2 1 10 10 H 1.09001 * 109.57998 * 246.34132 * 9 4 2 11 11 C 1.52994 * 109.58910 * 6.62704 * 9 4 2 12 12 H 1.09004 * 109.46814 * 303.67911 * 11 9 4 13 13 C 1.53001 * 109.47225 * 183.68174 * 11 9 4 14 14 C 1.50693 * 109.47575 * 63.67988 * 11 9 4 15 15 H 1.07998 * 119.99995 * 359.72442 * 14 11 9 16 16 C 1.37874 * 120.00401 * 180.02562 * 14 11 9 17 17 N 1.31522 * 119.99633 * 359.71866 * 16 14 11 18 18 Si 1.86797 * 120.00510 * 179.72481 * 16 14 11 19 19 H 1.48502 * 109.47170 * 89.99338 * 18 16 14 20 20 H 1.48498 * 109.47388 * 209.99749 * 18 16 14 21 21 H 1.48505 * 109.46834 * 329.99859 * 18 16 14 22 22 H 1.09003 * 109.47317 * 174.69078 * 1 2 3 23 23 H 1.09002 * 109.47193 * 294.69233 * 1 2 3 24 24 H 1.08996 * 109.46961 * 54.68653 * 1 2 3 25 25 H 1.09004 * 109.58467 * 353.37711 * 5 4 2 26 26 H 1.08992 * 109.58569 * 113.65639 * 5 4 2 27 27 H 1.08999 * 109.50069 * 65.31837 * 6 5 4 28 28 H 1.09003 * 109.49782 * 185.38311 * 6 5 4 29 29 H 1.08999 * 109.46461 * 181.38604 * 7 6 5 30 30 H 1.08999 * 109.46086 * 301.34758 * 7 6 5 31 31 H 1.09004 * 109.62201 * 178.83091 * 8 7 6 32 32 H 1.08993 * 109.39087 * 58.72339 * 8 7 6 33 33 H 1.08998 * 109.47161 * 294.87487 * 13 11 9 34 34 H 1.09002 * 109.47122 * 54.87001 * 13 11 9 35 35 H 1.09002 * 109.47617 * 174.87115 * 13 11 9 36 36 H 0.97002 * 120.00027 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4664 -2.4442 -0.1316 6 6 1.8687 -3.3568 1.0311 7 6 3.3928 -3.4902 1.0660 8 6 4.0251 -2.1144 1.2909 9 6 3.6441 -1.1867 0.1328 10 1 4.0895 -1.5543 -0.7916 11 6 4.1520 0.2275 0.4201 12 1 3.8154 0.9015 -0.3678 13 6 5.6813 0.2206 0.4662 14 6 3.6116 0.6957 1.7465 15 1 2.9663 0.0509 2.3247 16 6 3.9358 1.9496 2.2193 17 7 4.7213 2.7350 1.5151 18 14 3.2597 2.5330 3.8600 19 1 4.1988 2.1528 4.9457 20 1 3.1041 4.0096 3.8345 21 1 1.9386 1.9001 4.1041 22 1 -0.3634 -1.0233 -0.0951 23 1 -0.3634 0.4293 0.9337 24 1 -0.3633 0.5940 -0.8386 25 1 0.3914 -2.2662 -0.1014 26 1 1.7322 -2.9155 -1.0777 27 1 1.5196 -2.9260 1.9695 28 1 1.4200 -4.3407 0.8934 29 1 3.6804 -4.1588 1.8773 30 1 3.7434 -3.8981 0.1179 31 1 5.1097 -2.2130 1.3363 32 1 3.6577 -1.6961 2.2279 33 1 6.0166 -0.3812 1.3109 34 1 6.0709 -0.2034 -0.4593 35 1 6.0461 1.2415 0.5799 36 1 4.9498 3.6171 1.8478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260381049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = -13.229705 kcal Electronic energy + Delta-G solvation = -17130.364680 eV Core-core repulsion = 14615.533269 eV Total energy + Delta-G solvation = -2514.831411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62482 -36.43144 -34.28603 -32.13571 -31.32560 -28.79881 -28.25847 -24.88737 -24.15933 -22.95577 -20.35476 -19.76830 -18.02933 -16.37291 -15.55037 -14.84150 -14.48430 -14.36096 -13.94450 -13.56372 -13.16447 -12.95593 -12.63089 -12.34648 -11.75357 -11.51829 -11.31637 -11.11479 -10.93523 -10.69507 -10.59747 -10.49070 -10.32816 -10.23535 -10.07319 -9.69630 -9.02146 -8.59502 -8.17515 -7.53836 -7.33303 -5.66609 -3.58891 3.43287 3.50578 3.52289 3.77529 3.97160 4.67549 5.08495 5.24909 5.28046 5.48761 5.64862 5.70390 5.77435 5.81871 5.88750 5.99574 6.10312 6.24269 6.28543 6.39171 6.45138 6.53139 6.62658 6.87732 7.08075 7.19893 7.23836 7.44406 7.59544 7.99646 8.37182 8.40317 8.54582 8.73926 9.29543 9.50055 9.92739 11.42281 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026222 B = 0.012213 C = 0.010826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.554908 B = 2292.159103 C = 2585.681688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.480 3.520 3 O -0.455 6.455 4 N -0.612 5.612 5 C 0.106 3.894 6 C -0.133 4.133 7 C -0.120 4.120 8 C -0.125 4.125 9 C 0.159 3.841 10 H 0.038 0.962 11 C 0.034 3.966 12 H 0.073 0.927 13 C -0.140 4.140 14 C -0.455 4.455 15 H 0.044 0.956 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.877 3.123 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.000 1.000 35 H 0.080 0.920 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -11.428 -2.780 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.266 3.734 3 O -0.326 6.326 4 N -0.349 5.349 5 C -0.018 4.018 6 C -0.171 4.171 7 C -0.158 4.158 8 C -0.164 4.164 9 C 0.057 3.943 10 H 0.056 0.944 11 C 0.016 3.984 12 H 0.090 0.910 13 C -0.198 4.198 14 C -0.494 4.494 15 H 0.062 0.938 16 C -0.136 4.136 17 N -0.531 5.531 18 Si 0.707 3.293 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.206 1.206 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.019 0.981 35 H 0.099 0.901 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.007 -10.615 -2.775 12.508 hybrid contribution -0.466 0.135 1.128 1.228 sum -6.473 -10.480 -1.646 12.427 Atomic orbital electron populations 1.22070 0.95068 1.02706 1.03963 1.20317 0.89116 0.84272 0.79692 1.90958 1.67388 1.30977 1.43232 1.47929 1.07422 1.04657 1.74880 1.21671 0.97091 0.85512 0.97485 1.21887 0.96998 0.98797 0.99424 1.21572 0.95013 0.98454 1.00750 1.21981 0.99999 0.93264 1.01116 1.21434 0.78016 1.00028 0.94830 0.94415 1.19452 0.90755 0.88724 0.99453 0.90989 1.21959 0.99667 1.02635 0.95550 1.20818 1.27064 0.99200 1.02278 0.93778 1.24751 0.95729 0.96823 0.96329 1.69878 1.37078 1.08802 1.37367 0.86847 0.79123 0.77940 0.85426 1.21377 1.21629 1.20582 0.91275 0.89982 0.90261 0.90090 0.92727 0.91692 0.92037 0.92818 0.92831 0.91738 0.90332 0.95790 0.98084 0.90138 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 10.12 36.00 0.36 -2.39 16 2 C 0.48 10.04 6.96 -10.98 -0.08 9.97 16 3 O -0.46 -12.01 11.35 5.55 0.06 -11.94 16 4 N -0.61 -11.61 2.93 -165.23 -0.48 -12.10 16 5 C 0.11 1.48 6.36 -3.71 -0.02 1.46 16 6 C -0.13 -1.75 6.08 -26.62 -0.16 -1.91 16 7 C -0.12 -1.75 5.88 -26.67 -0.16 -1.90 16 8 C -0.13 -2.35 4.77 -26.59 -0.13 -2.48 16 9 C 0.16 3.34 2.64 -67.60 -0.18 3.16 16 10 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 11 C 0.03 0.88 1.58 -91.78 -0.15 0.74 16 12 H 0.07 2.14 5.77 -52.75 -0.30 1.83 16 13 C -0.14 -3.50 8.51 37.16 0.32 -3.18 16 14 C -0.46 -12.65 4.69 -34.44 -0.16 -12.82 16 15 H 0.04 1.24 6.35 -52.49 -0.33 0.90 16 16 C 0.06 1.84 5.29 -17.82 -0.09 1.74 16 17 N -0.89 -27.09 11.37 55.43 0.63 -26.46 16 18 Si 0.88 22.70 29.54 -169.99 -5.02 17.68 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 22 H 0.07 0.84 5.10 -51.93 -0.26 0.58 16 23 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.08 0.95 5.04 -51.93 -0.26 0.69 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.20 6.97 -51.93 -0.36 0.84 16 32 H 0.08 1.67 6.20 -51.93 -0.32 1.34 16 33 H 0.02 0.56 6.95 -51.93 -0.36 0.20 16 34 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.08 2.25 6.22 -51.93 -0.32 1.92 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 269.56 15.07 4.06 4.06 Total: -1.00 -32.10 269.56 -6.67 -38.77 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.47 Total: -2.39 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.44 Total: -7.63 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.15 Total: -38.56 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.06 Total: -11.94 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.10 -6.67 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.539 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds