Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21288 * 120.00144 * 2 1 4 4 N 1.34782 * 120.00019 * 179.97438 * 2 1 3 5 5 C 1.46924 * 120.62980 * 6.02354 * 4 2 1 6 6 C 1.53186 * 108.77428 * 233.58856 * 5 4 2 7 7 C 1.53033 * 109.31431 * 305.36333 * 6 5 4 8 8 C 1.53077 * 109.65747 * 61.30357 * 7 6 5 9 9 C 1.46928 * 120.62784 * 186.00445 * 4 2 1 10 10 H 1.09001 * 109.57998 * 246.34132 * 9 4 2 11 11 C 1.52994 * 109.58910 * 6.62704 * 9 4 2 12 12 H 1.09004 * 109.46814 * 303.67911 * 11 9 4 13 13 C 1.53001 * 109.47225 * 183.68174 * 11 9 4 14 14 C 1.50693 * 109.47575 * 63.67988 * 11 9 4 15 15 H 1.07998 * 119.99995 * 359.72442 * 14 11 9 16 16 C 1.37874 * 120.00401 * 180.02562 * 14 11 9 17 17 N 1.31522 * 119.99633 * 359.71866 * 16 14 11 18 18 Si 1.86797 * 120.00510 * 179.72481 * 16 14 11 19 19 H 1.48502 * 109.47170 * 89.99338 * 18 16 14 20 20 H 1.48498 * 109.47388 * 209.99749 * 18 16 14 21 21 H 1.48505 * 109.46834 * 329.99859 * 18 16 14 22 22 H 1.09003 * 109.47317 * 174.69078 * 1 2 3 23 23 H 1.09002 * 109.47193 * 294.69233 * 1 2 3 24 24 H 1.08996 * 109.46961 * 54.68653 * 1 2 3 25 25 H 1.09004 * 109.58467 * 353.37711 * 5 4 2 26 26 H 1.08992 * 109.58569 * 113.65639 * 5 4 2 27 27 H 1.08999 * 109.50069 * 65.31837 * 6 5 4 28 28 H 1.09003 * 109.49782 * 185.38311 * 6 5 4 29 29 H 1.08999 * 109.46461 * 181.38604 * 7 6 5 30 30 H 1.08999 * 109.46086 * 301.34758 * 7 6 5 31 31 H 1.09004 * 109.62201 * 178.83091 * 8 7 6 32 32 H 1.08993 * 109.39087 * 58.72339 * 8 7 6 33 33 H 1.08998 * 109.47161 * 294.87487 * 13 11 9 34 34 H 1.09002 * 109.47122 * 54.87001 * 13 11 9 35 35 H 1.09002 * 109.47617 * 174.87115 * 13 11 9 36 36 H 0.97002 * 120.00027 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4664 -2.4442 -0.1316 6 6 1.8687 -3.3568 1.0311 7 6 3.3928 -3.4902 1.0660 8 6 4.0251 -2.1144 1.2909 9 6 3.6441 -1.1867 0.1328 10 1 4.0895 -1.5543 -0.7916 11 6 4.1520 0.2275 0.4201 12 1 3.8154 0.9015 -0.3678 13 6 5.6813 0.2206 0.4662 14 6 3.6116 0.6957 1.7465 15 1 2.9663 0.0509 2.3247 16 6 3.9358 1.9496 2.2193 17 7 4.7213 2.7350 1.5151 18 14 3.2597 2.5330 3.8600 19 1 4.1988 2.1528 4.9457 20 1 3.1041 4.0096 3.8345 21 1 1.9386 1.9001 4.1041 22 1 -0.3634 -1.0233 -0.0951 23 1 -0.3634 0.4293 0.9337 24 1 -0.3633 0.5940 -0.8386 25 1 0.3914 -2.2662 -0.1014 26 1 1.7322 -2.9155 -1.0777 27 1 1.5196 -2.9260 1.9695 28 1 1.4200 -4.3407 0.8934 29 1 3.6804 -4.1588 1.8773 30 1 3.7434 -3.8981 0.1179 31 1 5.1097 -2.2130 1.3363 32 1 3.6577 -1.6961 2.2279 33 1 6.0166 -0.3812 1.3109 34 1 6.0709 -0.2034 -0.4593 35 1 6.0461 1.2415 0.5799 36 1 4.9498 3.6171 1.8478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = -34.195455 kcal Electronic energy + Delta-G solvation = -17131.273823 eV Core-core repulsion = 14615.533269 eV Total energy + Delta-G solvation = -2515.740554 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19187 -37.96641 -36.12835 -33.65217 -33.18789 -30.26401 -29.80154 -27.06835 -25.58280 -24.47584 -21.73998 -21.52431 -19.59819 -18.24458 -17.14770 -16.57605 -16.29545 -15.93979 -15.20738 -15.13333 -14.69352 -14.49845 -14.32709 -13.81748 -13.32783 -13.18353 -12.91505 -12.76894 -12.65257 -12.57903 -12.40093 -12.22874 -12.05786 -11.69823 -11.53134 -11.28823 -10.81718 -10.65245 -10.33724 -9.21079 -9.06858 -7.86760 -5.82582 1.35550 1.37227 1.44610 2.19727 2.52085 2.54277 3.48114 3.95148 4.03246 4.16660 4.22466 4.42759 4.48254 4.57491 4.67910 4.74867 4.83266 4.93198 4.98668 5.07049 5.13277 5.19627 5.25636 5.28278 5.33987 5.41367 5.49135 5.66081 5.78630 5.89600 6.27344 6.39926 6.55829 7.00623 7.18754 7.70163 7.89918 9.21732 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026222 B = 0.012213 C = 0.010826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.554908 B = 2292.159103 C = 2585.681688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.467 3.533 3 O -0.527 6.527 4 N -0.613 5.613 5 C 0.098 3.902 6 C -0.129 4.129 7 C -0.115 4.115 8 C -0.119 4.119 9 C 0.159 3.841 10 H 0.046 0.954 11 C 0.033 3.967 12 H 0.030 0.970 13 C -0.130 4.130 14 C -0.436 4.436 15 H 0.037 0.963 16 C 0.004 3.996 17 N -0.926 5.926 18 Si 0.931 3.069 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.275 1.275 22 H 0.109 0.891 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.022 0.978 35 H 0.046 0.954 36 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -14.529 -2.739 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.256 3.744 3 O -0.403 6.403 4 N -0.349 5.349 5 C -0.023 4.023 6 C -0.167 4.167 7 C -0.152 4.152 8 C -0.157 4.157 9 C 0.056 3.944 10 H 0.064 0.936 11 C 0.015 3.985 12 H 0.048 0.952 13 C -0.189 4.189 14 C -0.475 4.475 15 H 0.056 0.944 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.759 3.241 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.200 1.200 22 H 0.128 0.872 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.127 0.873 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.872 -13.787 -2.724 16.108 hybrid contribution 0.076 1.011 1.028 1.444 sum -7.796 -12.776 -1.696 15.062 Atomic orbital electron populations 1.22015 0.90544 1.05620 1.04420 1.21373 0.91445 0.83843 0.77745 1.90960 1.69290 1.33301 1.46741 1.48108 1.06818 1.06427 1.73559 1.22076 0.98165 0.83124 0.98962 1.21892 0.95952 1.00551 0.98294 1.21540 0.95858 0.95536 1.02282 1.21856 1.00022 0.95455 0.98400 1.21192 0.79790 0.97324 0.96088 0.93593 1.19263 0.90853 0.91218 0.97174 0.95203 1.21790 0.99619 1.00704 0.96772 1.20953 1.25392 0.98607 1.02552 0.94435 1.25451 0.96737 0.97485 0.99458 1.70045 1.39059 1.08887 1.38945 0.85978 0.78780 0.77062 0.82274 1.20479 1.22137 1.20031 0.87227 0.90130 0.89035 0.87340 0.90554 0.93085 0.87949 0.91116 0.91196 0.92241 0.93359 0.95328 0.95917 0.93542 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.72 10.12 71.24 0.72 -4.00 16 2 C 0.47 19.27 6.96 87.66 0.61 19.88 16 3 O -0.53 -28.76 11.35 -3.05 -0.03 -28.80 16 4 N -0.61 -22.16 2.93 -795.04 -2.33 -24.49 16 5 C 0.10 2.29 6.36 86.36 0.55 2.84 16 6 C -0.13 -2.78 6.08 30.67 0.19 -2.59 16 7 C -0.11 -2.88 5.88 30.63 0.18 -2.70 16 8 C -0.12 -4.29 4.77 30.68 0.15 -4.14 16 9 C 0.16 6.56 2.64 44.97 0.12 6.68 16 10 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 11 C 0.03 1.77 1.58 -11.54 -0.02 1.75 16 12 H 0.03 1.88 5.77 -15.42 -0.09 1.79 16 13 C -0.13 -6.72 8.51 71.98 0.61 -6.11 16 14 C -0.44 -24.92 4.69 25.60 0.12 -24.80 16 15 H 0.04 2.14 6.35 -2.91 -0.02 2.12 16 16 C 0.00 0.22 5.29 84.65 0.45 0.67 16 17 N -0.93 -58.99 11.37 21.45 0.24 -58.75 16 18 Si 0.93 47.84 29.54 68.60 2.03 49.86 16 19 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 21 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 22 H 0.11 2.13 5.10 -2.39 -0.01 2.12 16 23 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.11 1.92 5.04 -2.39 -0.01 1.91 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 2.15 6.97 -2.39 -0.02 2.14 16 32 H 0.05 2.02 6.20 -2.39 -0.01 2.00 16 33 H 0.03 1.38 6.95 -2.39 -0.02 1.36 16 34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 2.70 6.22 -2.39 -0.01 2.68 16 36 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -74.57 269.56 4.56 -70.01 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 0.98 Total: 4.69 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 3.67 Total: -12.52 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.09 Total: -83.24 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.03 Total: -28.80 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -74.57 4.56 -70.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.816 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds