Wall clock time and date at job start Mon Mar 30 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21286 * 120.00110 * 2 1 4 4 N 1.34780 * 120.00388 * 179.97438 * 2 1 3 5 5 C 1.47023 * 125.64409 * 359.97438 * 4 2 1 6 6 C 1.54322 * 107.27149 * 178.95789 * 5 4 2 7 7 C 1.55282 * 103.00430 * 337.88615 * 6 5 4 8 8 H 1.09001 * 110.95548 * 277.33125 * 7 6 5 9 9 C 1.52999 * 111.09626 * 153.45081 * 7 6 5 10 10 H 1.08997 * 109.47221 * 306.35427 * 9 7 6 11 11 C 1.53011 * 109.46877 * 186.35762 * 9 7 6 12 12 C 1.52998 * 109.47646 * 66.35799 * 9 7 6 13 13 C 1.50695 * 109.47387 * 184.99650 * 12 9 7 14 14 H 1.08003 * 119.99960 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00450 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99568 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00377 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47241 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47348 * 120.00577 * 17 15 13 20 20 H 1.48500 * 109.47113 * 240.00155 * 17 15 13 21 21 C 1.47419 * 125.65006 * 179.97438 * 4 2 1 22 22 H 1.08997 * 109.47225 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47126 * 300.00074 * 1 2 3 24 24 H 1.08995 * 109.47501 * 59.99996 * 1 2 3 25 25 H 1.09009 * 109.87859 * 298.37607 * 5 4 2 26 26 H 1.09002 * 109.88373 * 59.54097 * 5 4 2 27 27 H 1.09006 * 110.71959 * 96.16400 * 6 5 4 28 28 H 1.08997 * 110.71908 * 219.26179 * 6 5 4 29 29 H 1.08996 * 109.47092 * 180.02562 * 11 9 7 30 30 H 1.09005 * 109.46581 * 299.99879 * 11 9 7 31 31 H 1.09002 * 109.46804 * 59.99612 * 11 9 7 32 32 H 1.09004 * 109.46686 * 304.99661 * 12 9 7 33 33 H 1.08997 * 109.46988 * 64.99492 * 12 9 7 34 34 H 0.97003 * 119.99859 * 179.97438 * 16 15 13 35 35 H 1.09002 * 110.36926 * 322.95057 * 21 4 2 36 36 H 1.08995 * 110.36556 * 85.16341 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5747 -2.5066 0.0017 6 6 2.7281 -3.5316 -0.0249 7 6 3.9105 -2.7119 -0.6090 8 1 3.8623 -2.6795 -1.6975 9 6 5.2543 -3.2718 -0.1383 10 1 5.2607 -3.3345 0.9499 11 6 6.3824 -2.3482 -0.6025 12 6 5.4613 -4.6672 -0.7307 13 6 6.7247 -5.2684 -0.1709 14 1 7.3203 -4.7111 0.5370 15 6 7.1198 -6.5302 -0.5616 16 7 6.3943 -7.2090 -1.4233 17 14 8.6854 -7.2756 0.1328 18 1 9.3143 -6.3164 1.0761 19 1 8.3585 -8.5335 0.8513 20 1 9.6279 -7.5699 -0.9764 21 6 3.6480 -1.3122 0.0001 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.9784 -2.6428 0.9039 26 1 0.9481 -2.6307 -0.8816 27 1 2.9608 -3.8765 0.9826 28 1 2.4811 -4.3734 -0.6718 29 1 7.3398 -2.7473 -0.2676 30 1 6.3760 -2.2856 -1.6908 31 1 6.2350 -1.3541 -0.1804 32 1 4.6124 -5.3007 -0.4734 33 1 5.5437 -4.5929 -1.8150 34 1 6.6724 -8.0966 -1.6985 35 1 4.1055 -0.5384 -0.6163 36 1 4.0343 -1.2631 1.0181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:30 Heat of formation + Delta-G solvation = -61.211206 kcal Electronic energy + Delta-G solvation = -15720.308371 eV Core-core repulsion = 13203.396325 eV Total energy + Delta-G solvation = -2516.912045 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94633 -37.71939 -34.89874 -32.46656 -30.85059 -29.79664 -28.08223 -26.59507 -24.29005 -22.50953 -21.11788 -19.24318 -18.96127 -17.01018 -16.28369 -16.05133 -15.31719 -14.56929 -14.23149 -13.82168 -13.23432 -13.03006 -12.72977 -12.61352 -12.36941 -12.32312 -12.02954 -11.85117 -11.46424 -11.09379 -10.87801 -10.76558 -10.50236 -10.30312 -10.11912 -9.86111 -9.72118 -9.12329 -8.96650 -8.55799 -8.35470 -6.00810 -4.01843 2.64868 3.09994 3.30048 3.38205 3.41918 4.45189 4.54852 4.80755 4.96695 5.10207 5.18743 5.29932 5.35327 5.37693 5.48344 5.68380 5.73009 5.91424 6.00576 6.06742 6.16005 6.21831 6.35841 6.40434 6.48109 6.63940 6.95534 7.08559 7.14379 7.60382 7.66764 7.81337 7.99468 8.18990 8.42991 9.04832 9.62016 11.10570 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058715 B = 0.005403 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.765731 B = 5180.927400 C = 5484.686384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.522 3.478 3 O -0.556 6.556 4 N -0.618 5.618 5 C 0.099 3.901 6 C -0.125 4.125 7 C -0.091 4.091 8 H 0.079 0.921 9 C -0.075 4.075 10 H 0.059 0.941 11 C -0.136 4.136 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.108 3.892 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.032 0.968 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.074 0.926 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.893 8.378 2.394 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.311 3.689 3 O -0.435 6.435 4 N -0.352 5.352 5 C -0.024 4.024 6 C -0.163 4.163 7 C -0.111 4.111 8 H 0.097 0.903 9 C -0.094 4.094 10 H 0.078 0.922 11 C -0.193 4.193 12 C -0.009 4.009 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.014 4.014 22 H 0.095 0.905 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.636 8.848 2.309 14.027 hybrid contribution 0.804 -0.666 0.296 1.085 sum -9.832 8.182 2.605 13.054 Atomic orbital electron populations 1.21863 0.91830 1.04267 1.04930 1.20465 0.90279 0.82228 0.75900 1.90707 1.70831 1.30833 1.51110 1.48715 1.08219 1.05816 1.72468 1.22154 0.97038 0.82080 1.01159 1.22711 0.93563 0.97120 1.02861 1.22521 0.96213 0.92181 1.00140 0.90300 1.21182 0.90447 0.98023 0.99713 0.92243 1.21763 0.99952 0.97162 1.00455 1.19138 0.96775 0.88960 0.95983 1.21296 1.08136 1.00445 1.25405 0.92568 1.25000 0.96931 0.97280 0.95220 1.69969 1.38495 1.12318 1.32829 0.86601 0.83678 0.79189 0.78930 1.19763 1.21106 1.21098 1.22415 0.79381 0.98496 1.01134 0.90482 0.88972 0.88935 0.91584 0.91502 0.90287 0.89539 0.91836 0.93586 0.94860 0.96346 0.96643 0.93151 0.90779 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.21 36.00 0.37 -1.18 16 2 C 0.52 7.43 7.96 -10.99 -0.09 7.34 16 3 O -0.56 -10.24 17.36 5.55 0.10 -10.15 16 4 N -0.62 -8.60 3.33 -170.53 -0.57 -9.16 16 5 C 0.10 1.12 5.81 -3.06 -0.02 1.11 16 6 C -0.12 -1.73 5.55 -24.83 -0.14 -1.87 16 7 C -0.09 -1.46 2.57 -88.41 -0.23 -1.69 16 8 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 9 C -0.07 -1.43 1.85 -90.62 -0.17 -1.60 16 10 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 11 C -0.14 -2.50 8.80 37.16 0.33 -2.17 16 12 C 0.03 0.69 4.37 -27.89 -0.12 0.56 16 13 C -0.51 -13.92 8.41 -34.44 -0.29 -14.21 16 14 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.11 1.65 5.33 -2.54 -0.01 1.63 16 22 H 0.08 0.56 6.60 -51.93 -0.34 0.21 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.63 8.09 -51.92 -0.42 0.21 16 26 H 0.07 0.66 8.02 -51.93 -0.42 0.24 16 27 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 28 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 29 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.53 7.27 -51.93 -0.38 0.15 16 32 H 0.02 0.46 7.30 -51.93 -0.38 0.08 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.07 1.20 7.94 -51.93 -0.41 0.79 16 36 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 LS Contribution 291.60 15.07 4.39 4.39 Total: -1.00 -31.42 291.60 -6.83 -38.25 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -6.00 Total: -3.49 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.46 Total: -10.59 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.17 Total: -34.68 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.10 Total: -10.15 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.42 -6.83 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.962 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds