Wall clock time and date at job start Mon Mar 30 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21286 * 120.00110 * 2 1 4 4 N 1.34780 * 120.00388 * 179.97438 * 2 1 3 5 5 C 1.47023 * 125.64409 * 359.97438 * 4 2 1 6 6 C 1.54322 * 107.27149 * 178.95789 * 5 4 2 7 7 C 1.55282 * 103.00430 * 337.88615 * 6 5 4 8 8 H 1.09001 * 110.95548 * 277.33125 * 7 6 5 9 9 C 1.52999 * 111.09626 * 153.45081 * 7 6 5 10 10 H 1.08997 * 109.47221 * 306.35427 * 9 7 6 11 11 C 1.53011 * 109.46877 * 186.35762 * 9 7 6 12 12 C 1.52998 * 109.47646 * 66.35799 * 9 7 6 13 13 C 1.50695 * 109.47387 * 184.99650 * 12 9 7 14 14 H 1.08003 * 119.99960 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00450 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99568 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00377 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47241 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47348 * 120.00577 * 17 15 13 20 20 H 1.48500 * 109.47113 * 240.00155 * 17 15 13 21 21 C 1.47419 * 125.65006 * 179.97438 * 4 2 1 22 22 H 1.08997 * 109.47225 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47126 * 300.00074 * 1 2 3 24 24 H 1.08995 * 109.47501 * 59.99996 * 1 2 3 25 25 H 1.09009 * 109.87859 * 298.37607 * 5 4 2 26 26 H 1.09002 * 109.88373 * 59.54097 * 5 4 2 27 27 H 1.09006 * 110.71959 * 96.16400 * 6 5 4 28 28 H 1.08997 * 110.71908 * 219.26179 * 6 5 4 29 29 H 1.08996 * 109.47092 * 180.02562 * 11 9 7 30 30 H 1.09005 * 109.46581 * 299.99879 * 11 9 7 31 31 H 1.09002 * 109.46804 * 59.99612 * 11 9 7 32 32 H 1.09004 * 109.46686 * 304.99661 * 12 9 7 33 33 H 1.08997 * 109.46988 * 64.99492 * 12 9 7 34 34 H 0.97003 * 119.99859 * 179.97438 * 16 15 13 35 35 H 1.09002 * 110.36926 * 322.95057 * 21 4 2 36 36 H 1.08995 * 110.36556 * 85.16341 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5747 -2.5066 0.0017 6 6 2.7281 -3.5316 -0.0249 7 6 3.9105 -2.7119 -0.6090 8 1 3.8623 -2.6795 -1.6975 9 6 5.2543 -3.2718 -0.1383 10 1 5.2607 -3.3345 0.9499 11 6 6.3824 -2.3482 -0.6025 12 6 5.4613 -4.6672 -0.7307 13 6 6.7247 -5.2684 -0.1709 14 1 7.3203 -4.7111 0.5370 15 6 7.1198 -6.5302 -0.5616 16 7 6.3943 -7.2090 -1.4233 17 14 8.6854 -7.2756 0.1328 18 1 9.3143 -6.3164 1.0761 19 1 8.3585 -8.5335 0.8513 20 1 9.6279 -7.5699 -0.9764 21 6 3.6480 -1.3122 0.0001 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.9784 -2.6428 0.9039 26 1 0.9481 -2.6307 -0.8816 27 1 2.9608 -3.8765 0.9826 28 1 2.4811 -4.3734 -0.6718 29 1 7.3398 -2.7473 -0.2676 30 1 6.3760 -2.2856 -1.6908 31 1 6.2350 -1.3541 -0.1804 32 1 4.6124 -5.3007 -0.4734 33 1 5.5437 -4.5929 -1.8150 34 1 6.6724 -8.0966 -1.6985 35 1 4.1055 -0.5384 -0.6163 36 1 4.0343 -1.2631 1.0181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:29 Heat of formation + Delta-G solvation = -80.493311 kcal Electronic energy + Delta-G solvation = -15721.144505 eV Core-core repulsion = 13203.396325 eV Total energy + Delta-G solvation = -2517.748180 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08902 -39.00367 -36.45025 -34.38356 -32.09917 -30.80813 -29.51921 -28.15314 -25.93622 -23.90080 -22.53963 -20.60240 -20.17342 -18.48839 -17.96350 -17.23966 -16.54871 -16.34031 -15.44272 -15.18714 -14.69744 -14.35076 -14.15894 -13.90069 -13.63934 -13.43481 -13.25256 -13.08390 -12.91112 -12.75738 -12.64795 -12.36216 -12.19185 -11.80931 -11.62964 -11.35926 -11.03470 -10.93914 -10.78345 -10.49135 -9.67263 -8.14907 -6.22590 1.40354 1.42208 1.53718 1.59186 2.06050 2.44061 3.19279 3.49996 3.70436 3.90343 3.95259 4.32167 4.38834 4.45739 4.48602 4.55307 4.64974 4.69079 4.72008 4.87292 4.93234 5.01232 5.05371 5.16744 5.19831 5.28580 5.39027 5.43851 5.50305 5.61112 5.87077 5.93371 6.34057 6.56206 6.94010 7.11730 7.45460 8.96856 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058715 B = 0.005403 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.765731 B = 5180.927400 C = 5484.686384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.513 3.487 3 O -0.607 6.607 4 N -0.621 5.621 5 C 0.104 3.896 6 C -0.125 4.125 7 C -0.087 4.087 8 H 0.071 0.929 9 C -0.066 4.066 10 H 0.059 0.941 11 C -0.132 4.132 12 C 0.036 3.964 13 C -0.529 4.529 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.954 3.046 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.282 1.282 21 C 0.113 3.887 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.003 0.997 33 H -0.013 1.013 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.015 8.646 3.260 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.305 3.695 3 O -0.489 6.489 4 N -0.354 5.354 5 C -0.018 4.018 6 C -0.163 4.163 7 C -0.106 4.106 8 H 0.090 0.910 9 C -0.085 4.085 10 H 0.077 0.923 11 C -0.189 4.189 12 C -0.001 4.001 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.195 4.195 16 N -0.574 5.574 17 Si 0.779 3.221 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.208 1.208 21 C -0.010 4.010 22 H 0.120 0.880 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.005 0.995 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.775 9.101 3.182 15.219 hybrid contribution 1.158 -0.759 0.009 1.385 sum -10.617 8.342 3.191 13.874 Atomic orbital electron populations 1.21899 0.87441 1.06341 1.06167 1.21444 0.92277 0.81251 0.74494 1.90683 1.72251 1.32562 1.53452 1.48842 1.07528 1.06971 1.72049 1.22266 0.96081 0.79650 1.03777 1.22686 0.93728 0.97567 1.02271 1.22324 0.95324 0.93236 0.99738 0.91036 1.20996 0.92751 0.95490 0.99267 0.92283 1.21706 0.98725 0.98190 1.00292 1.18999 0.95234 0.91615 0.94244 1.21714 1.09068 1.00720 1.25206 0.92407 1.25839 1.00175 0.97933 0.95593 1.70086 1.40328 1.12762 1.34199 0.85563 0.79730 0.78432 0.78327 1.18835 1.20544 1.20823 1.22199 0.80969 0.97215 1.00617 0.87986 0.87570 0.87721 0.88671 0.89143 0.90665 0.89928 0.93541 0.93972 0.92375 0.97880 0.99459 0.93028 0.92018 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.21 71.23 0.73 -1.62 16 2 C 0.51 13.60 7.96 87.66 0.70 14.30 16 3 O -0.61 -22.00 17.36 -3.05 -0.05 -22.05 16 4 N -0.62 -15.98 3.33 -811.83 -2.70 -18.68 16 5 C 0.10 2.04 5.81 86.73 0.50 2.55 16 6 C -0.12 -3.30 5.55 31.83 0.18 -3.12 16 7 C -0.09 -2.74 2.57 -9.36 -0.02 -2.77 16 8 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 9 C -0.07 -2.54 1.85 -10.79 -0.02 -2.56 16 10 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 11 C -0.13 -4.85 8.80 71.99 0.63 -4.21 16 12 C 0.04 1.79 4.37 29.85 0.13 1.92 16 13 C -0.53 -28.96 8.41 25.60 0.22 -28.74 16 14 H 0.06 3.08 7.06 -2.91 -0.02 3.06 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 17 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 C 0.11 3.35 5.33 86.85 0.46 3.81 16 22 H 0.10 0.99 6.60 -2.39 -0.02 0.97 16 23 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.10 1.40 8.09 -2.38 -0.02 1.38 16 26 H 0.09 1.42 8.02 -2.39 -0.02 1.40 16 27 H 0.07 2.05 8.01 -2.38 -0.02 2.03 16 28 H 0.08 2.25 8.05 -2.39 -0.02 2.23 16 29 H 0.05 1.84 6.95 -2.39 -0.02 1.82 16 30 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.06 1.83 7.27 -2.39 -0.02 1.81 16 32 H 0.00 0.15 7.30 -2.38 -0.02 0.13 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.06 1.98 7.94 -2.39 -0.02 1.96 16 36 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 Total: -1.00 -68.73 291.60 4.55 -64.17 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.03 Total: 5.82 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 3.97 Total: -19.87 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -2.42 Total: -73.83 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.73 4.55 -64.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.320 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds