Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21274 * 120.00188 * 2 1 4 4 N 1.34784 * 120.00071 * 180.02562 * 2 1 3 5 5 C 1.47020 * 125.64597 * 359.95660 * 4 2 1 6 6 C 1.54374 * 107.28482 * 178.94056 * 5 4 2 7 7 C 1.55154 * 102.92370 * 337.86639 * 6 5 4 8 8 H 1.09006 * 110.99843 * 277.36014 * 7 6 5 9 9 C 1.52994 * 111.00780 * 153.54651 * 7 6 5 10 10 H 1.09008 * 109.46970 * 303.17690 * 9 7 6 11 11 C 1.53001 * 109.47368 * 63.17269 * 9 7 6 12 12 C 1.52997 * 109.47404 * 183.17739 * 9 7 6 13 13 C 1.50701 * 109.47212 * 174.99684 * 12 9 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.47427 * 125.64646 * 179.97438 * 4 2 1 22 22 H 1.08997 * 109.47117 * 269.99757 * 1 2 3 23 23 H 1.08994 * 109.47536 * 30.00014 * 1 2 3 24 24 H 1.09001 * 109.46984 * 149.99969 * 1 2 3 25 25 H 1.09002 * 109.88366 * 298.39365 * 5 4 2 26 26 H 1.08999 * 109.88216 * 59.40863 * 5 4 2 27 27 H 1.08996 * 110.75491 * 219.49260 * 6 5 4 28 28 H 1.09001 * 110.70039 * 96.20708 * 6 5 4 29 29 H 1.09008 * 109.46731 * 60.00275 * 11 9 7 30 30 H 1.08998 * 109.47430 * 180.02562 * 11 9 7 31 31 H 1.08996 * 109.47271 * 300.00893 * 11 9 7 32 32 H 1.09002 * 109.47153 * 54.99686 * 12 9 7 33 33 H 1.09001 * 109.46832 * 294.99876 * 12 9 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 35 35 H 1.08994 * 110.36468 * 85.25621 * 21 4 2 36 36 H 1.08991 * 110.46001 * 322.97870 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5746 -2.5066 -0.0002 6 6 2.7281 -3.5322 -0.0283 7 6 3.9081 -2.7115 -0.6125 8 1 3.8590 -2.6771 -1.7009 9 6 5.2519 -3.2735 -0.1446 10 1 5.2809 -3.2859 0.9451 11 6 5.4215 -4.6984 -0.6755 12 6 6.3854 -2.3933 -0.6749 13 6 7.6991 -2.8740 -0.1142 14 1 7.7231 -3.7226 0.5533 15 6 8.8703 -2.2309 -0.4542 16 7 8.8411 -1.1978 -1.2674 17 14 10.4987 -2.8271 0.2402 18 1 10.7285 -4.2343 -0.1751 19 1 11.5989 -1.9727 -0.2744 20 1 10.4633 -2.7480 1.7227 21 6 3.6480 -1.3123 -0.0011 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 0.9783 -2.6434 0.9019 26 1 0.9460 -2.6292 -0.8822 27 1 2.4828 -4.3717 -0.6788 28 1 2.9605 -3.8784 0.9788 29 1 5.3925 -4.6860 -1.7651 30 1 6.3787 -5.0990 -0.3417 31 1 4.6140 -5.3254 -0.2977 32 1 6.2164 -1.3605 -0.3702 33 1 6.4117 -2.4514 -1.7631 34 1 9.6651 -0.7451 -1.5064 35 1 4.0342 -1.2657 1.0171 36 1 4.1071 -0.5383 -0.6160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = -60.522288 kcal Electronic energy + Delta-G solvation = -15780.679766 eV Core-core repulsion = 13263.797594 eV Total energy + Delta-G solvation = -2516.882172 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.87396 -37.68092 -34.86270 -32.45033 -30.78831 -29.74548 -27.93393 -26.90082 -23.57820 -23.14332 -20.98201 -19.13017 -18.99718 -16.94088 -16.22773 -15.95404 -15.27906 -14.54991 -14.22567 -13.81781 -13.35846 -13.00092 -12.67366 -12.57307 -12.31484 -12.25341 -11.88093 -11.70518 -11.60271 -11.08281 -10.88707 -10.75245 -10.60068 -10.34624 -10.13922 -9.74225 -9.70202 -9.08278 -8.93756 -8.47652 -8.31075 -5.95792 -3.97786 2.75447 3.17403 3.34992 3.40075 3.41672 4.48139 4.59298 4.74863 4.99866 5.01328 5.21299 5.31661 5.38128 5.40144 5.49926 5.73020 5.74505 5.91885 5.99413 6.06972 6.11065 6.28096 6.35128 6.42583 6.45447 6.64648 6.95426 7.06890 7.15780 7.68458 7.71073 7.84618 8.03460 8.29789 8.46047 9.08472 9.65707 11.15451 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037662 B = 0.006197 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.268826 B = 4517.044073 C = 5084.266185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.520 3.480 3 O -0.548 6.548 4 N -0.620 5.620 5 C 0.101 3.899 6 C -0.129 4.129 7 C -0.091 4.091 8 H 0.078 0.922 9 C -0.075 4.075 10 H 0.059 0.941 11 C -0.131 4.131 12 C 0.025 3.975 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.111 3.889 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.069 0.931 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.226 -4.824 2.051 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.309 3.691 3 O -0.426 6.426 4 N -0.355 5.355 5 C -0.022 4.022 6 C -0.166 4.166 7 C -0.110 4.110 8 H 0.097 0.903 9 C -0.094 4.094 10 H 0.077 0.923 11 C -0.189 4.189 12 C -0.012 4.012 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.011 4.011 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.844 -4.047 1.964 16.471 hybrid contribution 0.940 -0.327 0.330 1.048 sum -14.905 -4.374 2.294 15.702 Atomic orbital electron populations 1.21869 0.91957 1.04536 1.04396 1.20440 0.90196 0.82317 0.76188 1.90737 1.70780 1.30714 1.50404 1.48708 1.08396 1.05549 1.72825 1.22065 0.96669 0.82485 1.00991 1.22747 0.94453 0.97173 1.02266 1.22492 0.95480 0.92955 1.00121 0.90324 1.21175 0.92868 0.95841 0.99530 0.92257 1.21707 1.00765 0.96116 1.00279 1.19176 0.91332 0.94385 0.96291 1.21194 0.91714 1.14446 1.28172 0.92687 1.25014 0.99106 0.95054 0.95256 1.69955 1.27625 1.20814 1.35015 0.86711 0.83575 0.78634 0.79375 1.20318 1.21368 1.20319 1.22374 0.78679 0.98427 1.01624 0.89139 0.89122 0.90396 0.91779 0.91701 0.90251 0.90523 0.93655 0.91899 0.94898 0.96367 0.96620 0.92991 0.91230 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.90 36.00 0.36 -1.26 16 2 C 0.52 7.97 7.96 -10.98 -0.09 7.88 16 3 O -0.55 -11.11 17.36 5.56 0.10 -11.01 16 4 N -0.62 -9.14 3.33 -170.51 -0.57 -9.71 16 5 C 0.10 1.09 6.16 -3.04 -0.02 1.07 16 6 C -0.13 -1.52 5.44 -24.87 -0.14 -1.66 16 7 C -0.09 -1.46 2.56 -88.49 -0.23 -1.69 16 8 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 9 C -0.08 -1.44 1.84 -90.62 -0.17 -1.61 16 10 H 0.06 1.15 8.13 -51.92 -0.42 0.73 16 11 C -0.13 -2.30 8.82 37.16 0.33 -1.97 16 12 C 0.03 0.63 4.35 -27.88 -0.12 0.51 16 13 C -0.52 -14.28 8.41 -34.44 -0.29 -14.57 16 14 H 0.05 1.47 7.06 -52.49 -0.37 1.10 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.11 1.93 5.45 -2.54 -0.01 1.92 16 22 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.58 7.06 -51.93 -0.37 0.21 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.58 7.76 -51.93 -0.40 0.18 16 27 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 28 H 0.08 0.89 8.04 -51.93 -0.42 0.48 16 29 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.06 1.20 6.95 -51.93 -0.36 0.84 16 31 H 0.03 0.47 7.38 -51.93 -0.38 0.08 16 32 H 0.02 0.49 7.15 -51.93 -0.37 0.12 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 36 H 0.08 1.65 7.83 -51.93 -0.41 1.24 16 LS Contribution 291.85 15.07 4.40 4.40 Total: -1.00 -32.64 291.85 -6.84 -39.48 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.01 Total: -3.62 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.47 Total: -9.85 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.17 Total: -36.07 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.10 Total: -11.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.64 -6.84 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.042 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds