Wall clock time and date at job start Mon Mar 30 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21274 * 120.00188 * 2 1 4 4 N 1.34784 * 120.00071 * 180.02562 * 2 1 3 5 5 C 1.47020 * 125.64597 * 359.95660 * 4 2 1 6 6 C 1.54374 * 107.28482 * 178.94056 * 5 4 2 7 7 C 1.55154 * 102.92370 * 337.86639 * 6 5 4 8 8 H 1.09006 * 110.99843 * 277.36014 * 7 6 5 9 9 C 1.52994 * 111.00780 * 153.54651 * 7 6 5 10 10 H 1.09008 * 109.46970 * 303.17690 * 9 7 6 11 11 C 1.53001 * 109.47368 * 63.17269 * 9 7 6 12 12 C 1.52997 * 109.47404 * 183.17739 * 9 7 6 13 13 C 1.50701 * 109.47212 * 174.99684 * 12 9 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.47427 * 125.64646 * 179.97438 * 4 2 1 22 22 H 1.08997 * 109.47117 * 269.99757 * 1 2 3 23 23 H 1.08994 * 109.47536 * 30.00014 * 1 2 3 24 24 H 1.09001 * 109.46984 * 149.99969 * 1 2 3 25 25 H 1.09002 * 109.88366 * 298.39365 * 5 4 2 26 26 H 1.08999 * 109.88216 * 59.40863 * 5 4 2 27 27 H 1.08996 * 110.75491 * 219.49260 * 6 5 4 28 28 H 1.09001 * 110.70039 * 96.20708 * 6 5 4 29 29 H 1.09008 * 109.46731 * 60.00275 * 11 9 7 30 30 H 1.08998 * 109.47430 * 180.02562 * 11 9 7 31 31 H 1.08996 * 109.47271 * 300.00893 * 11 9 7 32 32 H 1.09002 * 109.47153 * 54.99686 * 12 9 7 33 33 H 1.09001 * 109.46832 * 294.99876 * 12 9 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 35 35 H 1.08994 * 110.36468 * 85.25621 * 21 4 2 36 36 H 1.08991 * 110.46001 * 322.97870 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5746 -2.5066 -0.0002 6 6 2.7281 -3.5322 -0.0283 7 6 3.9081 -2.7115 -0.6125 8 1 3.8590 -2.6771 -1.7009 9 6 5.2519 -3.2735 -0.1446 10 1 5.2809 -3.2859 0.9451 11 6 5.4215 -4.6984 -0.6755 12 6 6.3854 -2.3933 -0.6749 13 6 7.6991 -2.8740 -0.1142 14 1 7.7231 -3.7226 0.5533 15 6 8.8703 -2.2309 -0.4542 16 7 8.8411 -1.1978 -1.2674 17 14 10.4987 -2.8271 0.2402 18 1 10.7285 -4.2343 -0.1751 19 1 11.5989 -1.9727 -0.2744 20 1 10.4633 -2.7480 1.7227 21 6 3.6480 -1.3123 -0.0011 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 0.9783 -2.6434 0.9019 26 1 0.9460 -2.6292 -0.8822 27 1 2.4828 -4.3717 -0.6788 28 1 2.9605 -3.8784 0.9788 29 1 5.3925 -4.6860 -1.7651 30 1 6.3787 -5.0990 -0.3417 31 1 4.6140 -5.3254 -0.2977 32 1 6.2164 -1.3605 -0.3702 33 1 6.4117 -2.4514 -1.7631 34 1 9.6651 -0.7451 -1.5064 35 1 4.0342 -1.2657 1.0171 36 1 4.1071 -0.5383 -0.6160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:32 Heat of formation + Delta-G solvation = -82.072848 kcal Electronic energy + Delta-G solvation = -15781.614268 eV Core-core repulsion = 13263.797594 eV Total energy + Delta-G solvation = -2517.816674 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08440 -39.02191 -36.45658 -34.42100 -32.09790 -30.78663 -29.20056 -28.67531 -25.43609 -24.32673 -22.41757 -20.59506 -20.19319 -18.50613 -17.93833 -17.21012 -16.55143 -16.43469 -15.44677 -15.17683 -14.72244 -14.41496 -14.25777 -13.68212 -13.67706 -13.35333 -13.26647 -12.98738 -12.93644 -12.81017 -12.66018 -12.27237 -12.20123 -11.92290 -11.66696 -11.38088 -11.02204 -10.95456 -10.75380 -10.52348 -9.67776 -8.16988 -6.26979 1.39085 1.42195 1.49752 1.59352 2.06119 2.41818 3.16487 3.51779 3.71603 3.91092 3.95661 4.32392 4.41445 4.47980 4.52077 4.58113 4.65205 4.72288 4.75631 4.87574 4.95100 5.03616 5.04084 5.14793 5.24392 5.31129 5.40865 5.45719 5.53848 5.58597 5.84730 5.90161 6.29192 6.58367 6.90841 7.13194 7.41816 8.94870 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037662 B = 0.006197 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.268826 B = 4517.044073 C = 5084.266185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.506 3.494 3 O -0.615 6.615 4 N -0.621 5.621 5 C 0.098 3.902 6 C -0.117 4.117 7 C -0.086 4.086 8 H 0.071 0.929 9 C -0.067 4.067 10 H 0.058 0.942 11 C -0.124 4.124 12 C 0.029 3.971 13 C -0.529 4.529 14 H 0.065 0.935 15 C -0.005 4.005 16 N -0.939 5.939 17 Si 0.961 3.039 18 H -0.263 1.263 19 H -0.288 1.288 20 H -0.268 1.268 21 C 0.111 3.889 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.077 0.923 32 H -0.018 1.018 33 H -0.015 1.015 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.439 -7.589 3.009 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.298 3.702 3 O -0.497 6.497 4 N -0.354 5.354 5 C -0.023 4.023 6 C -0.155 4.155 7 C -0.105 4.105 8 H 0.089 0.911 9 C -0.086 4.086 10 H 0.077 0.923 11 C -0.181 4.181 12 C -0.008 4.008 13 C -0.567 4.567 14 H 0.083 0.917 15 C -0.202 4.202 16 N -0.580 5.580 17 Si 0.786 3.214 18 H -0.188 1.188 19 H -0.214 1.214 20 H -0.193 1.193 21 C -0.013 4.013 22 H 0.132 0.868 23 H 0.112 0.888 24 H 0.129 0.871 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.000 1.000 33 H 0.003 0.997 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.095 -6.872 2.930 19.577 hybrid contribution 1.627 0.564 0.021 1.722 sum -16.468 -6.308 2.950 17.880 Atomic orbital electron populations 1.21884 0.86645 1.06314 1.06399 1.21667 0.92611 0.81342 0.74614 1.90705 1.72538 1.33101 1.53387 1.48872 1.07000 1.07516 1.72032 1.22402 0.96512 0.79340 1.04092 1.22765 0.92143 0.97605 1.02945 1.22309 0.95803 0.92765 0.99671 0.91083 1.21000 0.92313 0.96065 0.99197 0.92349 1.21630 1.01432 0.94997 1.00084 1.19079 0.93510 0.93849 0.94363 1.21675 0.92789 1.14411 1.27838 0.91675 1.26000 1.03439 0.95155 0.95625 1.70121 1.28599 1.22444 1.36819 0.85561 0.78434 0.78548 0.78884 1.18787 1.21363 1.19286 1.22111 0.81097 0.98232 0.99828 0.86774 0.88818 0.87131 0.88460 0.88710 0.87255 0.89670 0.93997 0.93881 0.90424 0.99963 0.99654 0.93087 0.92797 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.90 71.23 0.71 -1.75 16 2 C 0.51 15.29 7.96 87.65 0.70 15.99 16 3 O -0.61 -26.17 17.36 -3.01 -0.05 -26.23 16 4 N -0.62 -17.70 3.33 -811.75 -2.70 -20.40 16 5 C 0.10 1.67 6.16 86.75 0.53 2.21 16 6 C -0.12 -2.30 5.44 31.80 0.17 -2.12 16 7 C -0.09 -2.72 2.56 -9.41 -0.02 -2.75 16 8 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 9 C -0.07 -2.57 1.84 -10.80 -0.02 -2.59 16 10 H 0.06 2.25 8.13 -2.38 -0.02 2.23 16 11 C -0.12 -4.13 8.82 71.98 0.63 -3.49 16 12 C 0.03 1.54 4.35 29.85 0.13 1.67 16 13 C -0.53 -30.03 8.41 25.60 0.22 -29.81 16 14 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 15 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 16 N -0.94 -59.32 13.29 21.45 0.28 -59.04 16 17 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C 0.11 4.06 5.45 86.85 0.47 4.53 16 22 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.11 1.06 7.06 -2.39 -0.02 1.04 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.15 7.76 -2.39 -0.02 1.13 16 27 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16 28 H 0.08 1.59 8.04 -2.39 -0.02 1.57 16 29 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 31 H 0.08 1.90 7.38 -2.39 -0.02 1.88 16 32 H -0.02 -1.07 7.15 -2.39 -0.02 -1.09 16 33 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.05 2.09 8.03 -2.39 -0.02 2.07 16 36 H 0.03 1.55 7.83 -2.39 -0.02 1.53 16 Total: -1.00 -77.59 291.85 4.57 -73.02 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.03 Total: 3.51 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.98 Total: -17.97 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.42 Total: -79.44 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -77.59 4.57 -73.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.051 kcal (2) G-P(sol) polarization free energy of solvation -77.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds