Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46803 * 110.99903 * 2 1 4 4 C 1.53066 * 109.44416 * 186.20632 * 3 2 1 5 5 C 1.52041 * 109.30822 * 300.81795 * 4 3 2 6 6 H 1.08992 * 108.74766 * 297.26233 * 5 4 3 7 7 C 1.50707 * 109.67075 * 177.53243 * 5 4 3 8 8 H 1.08004 * 119.99545 * 239.32801 * 7 5 4 9 9 C 1.37873 * 120.00080 * 59.32940 * 7 5 4 10 10 N 1.31511 * 119.99903 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99948 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47096 * 89.99744 * 11 9 7 13 13 H 1.48497 * 109.47093 * 209.99426 * 11 9 7 14 14 H 1.48502 * 109.47089 * 329.99863 * 11 9 7 15 15 C 1.52932 * 109.90697 * 57.11043 * 5 4 3 16 16 H 1.08997 * 109.52243 * 183.28127 * 15 5 4 17 17 C 1.53106 * 109.65566 * 63.11704 * 15 5 4 18 18 C 1.53126 * 109.09474 * 182.76799 * 17 15 5 19 19 O 1.42890 * 109.48441 * 57.33043 * 18 17 15 20 20 C 1.42917 * 114.19193 * 299.06541 * 19 18 17 21 21 C 1.46882 * 110.99967 * 124.40976 * 2 1 3 22 22 H 1.08995 * 109.61576 * 294.79477 * 21 2 1 23 23 H 1.08998 * 109.46896 * 295.58750 * 1 2 3 24 24 H 1.09004 * 109.46477 * 55.58872 * 1 2 3 25 25 H 1.08998 * 109.46458 * 175.58346 * 1 2 3 26 26 H 1.08998 * 109.47439 * 306.20063 * 3 2 1 27 27 H 1.09007 * 109.47894 * 66.21277 * 3 2 1 28 28 H 1.09001 * 109.51987 * 60.43177 * 4 3 2 29 29 H 1.09000 * 109.52615 * 180.55928 * 4 3 2 30 30 H 0.97004 * 119.99911 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.53466 * 302.65576 * 17 15 5 32 32 H 1.09003 * 109.53513 * 62.88755 * 17 15 5 33 33 H 1.08993 * 109.46714 * 177.33356 * 18 17 15 34 34 H 1.08995 * 109.47124 * 297.32647 * 18 17 15 35 35 H 1.09007 * 109.50831 * 301.35680 * 20 19 18 36 36 H 1.08996 * 109.54438 * 181.24336 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3705 0.0000 4 6 3.5173 1.3320 -0.1560 5 6 4.1203 0.5373 0.9913 6 1 3.8970 1.0491 1.9273 7 6 5.6138 0.4428 0.8131 8 1 6.0876 -0.5242 0.7305 9 6 6.3753 1.5908 0.7556 10 7 5.7982 2.7683 0.8557 11 14 8.2265 1.4736 0.5354 12 1 8.5542 1.4808 -0.9130 13 1 8.8780 2.6330 1.1961 14 1 8.7191 0.2137 1.1481 15 6 3.5201 -0.8689 1.0228 16 1 3.9128 -1.4135 1.8814 17 6 3.8847 -1.6134 -0.2645 18 6 3.2206 -2.9931 -0.2504 19 8 1.8071 -2.8402 -0.1073 20 6 1.4077 -2.1899 1.1010 21 6 1.9954 -0.7749 1.1313 22 1 1.7246 -0.2862 2.0672 23 1 -0.3633 0.4438 0.9269 24 1 -0.3632 0.5808 -0.8479 25 1 -0.3632 -1.0246 -0.0791 26 1 1.5587 1.9273 -0.8292 27 1 1.7384 1.8584 0.9404 28 1 3.7746 0.8511 -1.0997 29 1 3.9104 2.3486 -0.1462 30 1 6.3339 3.5760 0.8148 31 1 3.5305 -1.0472 -1.1258 32 1 4.9668 -1.7305 -0.3238 33 1 3.4373 -3.5101 -1.1852 34 1 3.6095 -3.5750 0.5851 35 1 1.7755 -2.7551 1.9574 36 1 0.3200 -2.1332 1.1422 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260450864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -46.350239 kcal Electronic energy + Delta-G solvation = -17022.981866 eV Core-core repulsion = 14506.714241 eV Total energy + Delta-G solvation = -2516.267625 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74597 -36.52062 -34.39422 -32.04605 -30.58192 -29.53288 -26.97640 -24.74569 -24.04522 -22.68300 -21.34668 -20.15261 -17.71762 -16.30786 -15.55091 -15.52256 -14.93076 -14.77484 -14.38178 -14.19065 -13.12744 -12.89317 -12.55206 -12.38963 -12.13231 -11.83417 -11.54705 -11.19719 -10.96088 -10.82785 -10.63204 -10.38441 -10.15917 -10.01722 -9.80385 -9.46326 -9.20713 -8.63205 -8.54770 -8.24920 -7.59943 -5.97191 -4.02596 3.30713 3.37765 3.40285 4.26723 4.44263 4.65080 5.30379 5.32492 5.43534 5.61968 5.65561 5.73307 5.79913 5.88873 5.95317 6.02038 6.05457 6.21491 6.24231 6.29832 6.47047 6.62234 6.71475 6.86194 7.01472 7.10993 7.30640 7.47240 7.62587 7.67221 7.83094 7.87674 8.03769 8.18439 8.47430 9.00245 9.61610 11.08559 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035912 B = 0.009849 C = 0.008280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.495408 B = 2842.250848 C = 3380.770478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.523 5.523 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.055 3.945 6 H 0.018 0.982 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.888 3.112 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.070 4.070 16 H 0.054 0.946 17 C -0.130 4.130 18 C 0.061 3.939 19 O -0.377 6.377 20 C 0.068 3.932 21 C 0.055 3.945 22 H 0.038 0.962 23 H 0.013 0.987 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.019 0.981 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.259 0.741 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -6.430 -0.508 9.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.248 5.248 3 C -0.072 4.072 4 C -0.143 4.143 5 C 0.036 3.964 6 H 0.036 0.964 7 C -0.544 4.544 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.717 3.283 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.088 4.088 16 H 0.073 0.927 17 C -0.168 4.168 18 C -0.016 4.016 19 O -0.295 6.295 20 C -0.009 4.009 21 C -0.054 4.054 22 H 0.056 0.944 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.443 -6.524 -1.068 9.955 hybrid contribution 0.909 0.637 0.913 1.437 sum -6.534 -5.887 -0.155 8.796 Atomic orbital electron populations 1.22393 0.89246 1.01506 0.99412 1.61821 1.05719 1.14302 1.42930 1.22301 0.99143 0.87248 0.98479 1.21528 0.89232 1.03978 0.99607 1.18430 0.94441 0.88781 0.94708 0.96399 1.21179 0.91612 0.92354 1.49270 0.92519 1.24959 0.98215 0.95529 0.95315 1.69869 1.35107 0.97261 1.50871 0.86653 0.85992 0.77505 0.78186 1.20742 1.21390 1.20024 1.21180 0.90838 1.00081 0.96737 0.92729 1.22047 1.00390 0.94531 0.99794 1.22649 0.81110 0.97599 1.00207 1.87828 1.22849 1.78464 1.40381 1.22652 0.99063 0.91853 0.87327 1.22333 0.97581 0.93696 0.91748 0.94447 0.96809 0.92106 0.91532 0.92582 0.96240 0.93527 0.88813 0.93121 0.90167 0.90954 0.90005 0.94538 0.93588 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.09 60.07 0.55 0.89 16 2 N -0.52 -9.68 3.99 -234.69 -0.94 -10.61 16 3 C 0.06 1.12 5.47 -3.84 -0.02 1.10 16 4 C -0.11 -2.48 4.75 -27.19 -0.13 -2.61 16 5 C 0.05 1.34 1.89 -92.29 -0.17 1.16 16 6 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 7 C -0.51 -13.46 7.88 -34.44 -0.27 -13.73 16 8 H 0.06 1.49 6.55 -52.48 -0.34 1.14 16 9 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 10 N -0.89 -25.13 11.31 55.43 0.63 -24.50 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C -0.07 -1.44 2.05 -90.52 -0.19 -1.62 16 16 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 17 C -0.13 -2.53 4.68 -26.61 -0.12 -2.66 16 18 C 0.06 1.01 6.85 37.22 0.25 1.27 16 19 O -0.38 -6.57 10.65 -35.23 -0.38 -6.95 16 20 C 0.07 1.09 5.83 37.28 0.22 1.30 16 21 C 0.06 1.02 2.12 -67.52 -0.14 0.87 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 24 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 25 H 0.07 0.95 6.19 -51.93 -0.32 0.63 16 26 H 0.06 1.04 8.08 -51.93 -0.42 0.63 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 1.12 6.61 -51.93 -0.34 0.78 16 29 H 0.09 2.46 6.10 -51.93 -0.32 2.14 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.08 1.70 6.08 -51.93 -0.32 1.38 16 32 H 0.07 1.46 6.59 -51.93 -0.34 1.12 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.18 6.25 -51.93 -0.32 0.86 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -27.94 266.68 -7.48 -35.41 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.66 Total: -0.96 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.13 Total: -12.47 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.31 Total: -35.11 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.38 Total: -6.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.94 -7.48 -35.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260450864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.939 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds