Wall clock time and date at job start Mon Mar 30 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46803 * 110.99903 * 2 1 4 4 C 1.53066 * 109.44416 * 186.20632 * 3 2 1 5 5 C 1.52041 * 109.30822 * 300.81795 * 4 3 2 6 6 H 1.08992 * 108.74766 * 297.26233 * 5 4 3 7 7 C 1.50707 * 109.67075 * 177.53243 * 5 4 3 8 8 H 1.08004 * 119.99545 * 239.32801 * 7 5 4 9 9 C 1.37873 * 120.00080 * 59.32940 * 7 5 4 10 10 N 1.31511 * 119.99903 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99948 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47096 * 89.99744 * 11 9 7 13 13 H 1.48497 * 109.47093 * 209.99426 * 11 9 7 14 14 H 1.48502 * 109.47089 * 329.99863 * 11 9 7 15 15 C 1.52932 * 109.90697 * 57.11043 * 5 4 3 16 16 H 1.08997 * 109.52243 * 183.28127 * 15 5 4 17 17 C 1.53106 * 109.65566 * 63.11704 * 15 5 4 18 18 C 1.53126 * 109.09474 * 182.76799 * 17 15 5 19 19 O 1.42890 * 109.48441 * 57.33043 * 18 17 15 20 20 C 1.42917 * 114.19193 * 299.06541 * 19 18 17 21 21 C 1.46882 * 110.99967 * 124.40976 * 2 1 3 22 22 H 1.08995 * 109.61576 * 294.79477 * 21 2 1 23 23 H 1.08998 * 109.46896 * 295.58750 * 1 2 3 24 24 H 1.09004 * 109.46477 * 55.58872 * 1 2 3 25 25 H 1.08998 * 109.46458 * 175.58346 * 1 2 3 26 26 H 1.08998 * 109.47439 * 306.20063 * 3 2 1 27 27 H 1.09007 * 109.47894 * 66.21277 * 3 2 1 28 28 H 1.09001 * 109.51987 * 60.43177 * 4 3 2 29 29 H 1.09000 * 109.52615 * 180.55928 * 4 3 2 30 30 H 0.97004 * 119.99911 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.53466 * 302.65576 * 17 15 5 32 32 H 1.09003 * 109.53513 * 62.88755 * 17 15 5 33 33 H 1.08993 * 109.46714 * 177.33356 * 18 17 15 34 34 H 1.08995 * 109.47124 * 297.32647 * 18 17 15 35 35 H 1.09007 * 109.50831 * 301.35680 * 20 19 18 36 36 H 1.08996 * 109.54438 * 181.24336 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3705 0.0000 4 6 3.5173 1.3320 -0.1560 5 6 4.1203 0.5373 0.9913 6 1 3.8970 1.0491 1.9273 7 6 5.6138 0.4428 0.8131 8 1 6.0876 -0.5242 0.7305 9 6 6.3753 1.5908 0.7556 10 7 5.7982 2.7683 0.8557 11 14 8.2265 1.4736 0.5354 12 1 8.5542 1.4808 -0.9130 13 1 8.8780 2.6330 1.1961 14 1 8.7191 0.2137 1.1481 15 6 3.5201 -0.8689 1.0228 16 1 3.9128 -1.4135 1.8814 17 6 3.8847 -1.6134 -0.2645 18 6 3.2206 -2.9931 -0.2504 19 8 1.8071 -2.8402 -0.1073 20 6 1.4077 -2.1899 1.1010 21 6 1.9954 -0.7749 1.1313 22 1 1.7246 -0.2862 2.0672 23 1 -0.3633 0.4438 0.9269 24 1 -0.3632 0.5808 -0.8479 25 1 -0.3632 -1.0246 -0.0791 26 1 1.5587 1.9273 -0.8292 27 1 1.7384 1.8584 0.9404 28 1 3.7746 0.8511 -1.0997 29 1 3.9104 2.3486 -0.1462 30 1 6.3339 3.5760 0.8148 31 1 3.5305 -1.0472 -1.1258 32 1 4.9668 -1.7305 -0.3238 33 1 3.4373 -3.5101 -1.1852 34 1 3.6095 -3.5750 0.5851 35 1 1.7755 -2.7551 1.9574 36 1 0.3200 -2.1332 1.1422 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260450864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:50 Heat of formation + Delta-G solvation = -64.315658 kcal Electronic energy + Delta-G solvation = -17023.760905 eV Core-core repulsion = 14506.714241 eV Total energy + Delta-G solvation = -2517.046664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25442 -37.98609 -36.10867 -33.90512 -32.23609 -30.99838 -28.70308 -26.16896 -25.82045 -24.20856 -22.94136 -21.81907 -19.33745 -18.29643 -17.10235 -16.93393 -16.54317 -16.29208 -16.03002 -15.66574 -14.72041 -14.50253 -14.22687 -14.06183 -13.68043 -13.29827 -13.11374 -12.84616 -12.67537 -12.52942 -12.26322 -12.06720 -11.90633 -11.75418 -11.48226 -11.08915 -10.93838 -10.52482 -10.36545 -10.03672 -9.07044 -8.05744 -6.18258 1.40857 1.42069 1.51189 2.44116 2.92688 3.20918 3.28240 3.90443 4.04507 4.14411 4.29204 4.34310 4.42687 4.53587 4.60459 4.62061 4.71482 4.74970 4.81895 4.86271 4.90151 5.07188 5.09911 5.27850 5.29704 5.33302 5.53093 5.63356 5.69153 6.01033 6.05277 6.32035 6.32131 6.43296 6.49003 6.92551 7.48998 8.98494 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035912 B = 0.009849 C = 0.008280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.495408 B = 2842.250848 C = 3380.770478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.532 5.532 3 C 0.066 3.934 4 C -0.095 4.095 5 C 0.054 3.946 6 H -0.021 1.021 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.010 3.990 10 N -0.920 5.920 11 Si 0.950 3.050 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.268 1.268 15 C -0.069 4.069 16 H 0.052 0.948 17 C -0.122 4.122 18 C 0.067 3.933 19 O -0.384 6.384 20 C 0.072 3.928 21 C 0.055 3.945 22 H 0.032 0.968 23 H 0.023 0.977 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.258 0.742 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 -8.151 -0.789 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.062 4.062 4 C -0.133 4.133 5 C 0.036 3.964 6 H -0.003 1.003 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.187 4.187 10 N -0.560 5.560 11 Si 0.776 3.224 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.088 4.088 16 H 0.070 0.930 17 C -0.160 4.160 18 C -0.010 4.010 19 O -0.302 6.302 20 C -0.005 4.005 21 C -0.054 4.054 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.358 -8.262 -1.349 11.829 hybrid contribution 1.183 1.201 1.020 1.970 sum -7.175 -7.061 -0.329 10.072 Atomic orbital electron populations 1.22469 0.86626 1.02911 1.00400 1.61787 1.08053 1.12787 1.43034 1.22083 0.96668 0.88853 0.98617 1.21271 0.91943 1.01582 0.98547 1.18377 0.93977 0.91116 0.92978 1.00276 1.21527 0.93070 0.92341 1.48785 0.92522 1.25719 1.02448 0.95303 0.95275 1.70019 1.36477 0.97761 1.51742 0.85680 0.80968 0.77588 0.78162 1.20295 1.21305 1.19225 1.21086 0.92795 0.97547 0.97388 0.93007 1.21919 0.99790 0.96244 0.98050 1.22643 0.80673 0.95595 1.02050 1.87826 1.22934 1.78347 1.41112 1.22752 1.00442 0.89763 0.87529 1.22330 0.95864 0.95669 0.91514 0.95023 0.95890 0.91009 0.89896 0.91029 0.97151 0.94698 0.92090 0.93273 0.92138 0.92331 0.87993 0.92927 0.91894 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.09 127.69 1.16 1.80 16 2 N -0.53 -18.83 3.99 -896.44 -3.58 -22.41 16 3 C 0.07 2.63 5.47 86.34 0.47 3.11 16 4 C -0.10 -4.62 4.75 30.30 0.14 -4.48 16 5 C 0.05 2.72 1.89 -11.88 -0.02 2.70 16 6 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 7 C -0.52 -28.30 7.88 25.60 0.20 -28.09 16 8 H 0.06 3.02 6.55 -2.91 -0.02 3.00 16 9 C 0.01 0.58 5.30 84.65 0.45 1.03 16 10 N -0.92 -53.52 11.31 21.45 0.24 -53.27 16 11 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C -0.07 -2.85 2.05 -10.73 -0.02 -2.88 16 16 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 17 C -0.12 -4.67 4.68 30.67 0.14 -4.53 16 18 C 0.07 2.03 6.85 72.02 0.49 2.53 16 19 O -0.38 -12.05 10.65 -148.98 -1.59 -13.63 16 20 C 0.07 2.05 5.83 72.06 0.42 2.47 16 21 C 0.06 1.94 2.12 45.05 0.10 2.04 16 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 25 H 0.08 2.02 6.19 -2.39 -0.01 2.00 16 26 H 0.07 2.62 8.08 -2.39 -0.02 2.60 16 27 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.03 1.73 6.61 -2.39 -0.02 1.71 16 29 H 0.06 3.35 6.10 -2.39 -0.01 3.33 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.06 2.54 6.08 -2.39 -0.01 2.53 16 32 H 0.06 2.36 6.59 -2.39 -0.02 2.34 16 33 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.11 2.59 6.25 -2.39 -0.01 2.57 16 Total: -1.00 -60.73 266.68 1.69 -59.04 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.05 Total: 8.76 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.54 Total: -24.30 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -3.33 Total: -75.68 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.59 Total: -13.63 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.73 1.69 -59.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260450864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.274 kcal (2) G-P(sol) polarization free energy of solvation -60.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds