Wall clock time and date at job start Mon Mar 30 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46961 * 110.99781 * 2 1 4 4 C 1.52976 * 109.83401 * 174.77028 * 3 2 1 5 5 C 1.53227 * 109.55494 * 58.45742 * 4 3 2 6 6 H 1.09002 * 109.57897 * 182.82863 * 5 4 3 7 7 C 1.50695 * 109.57874 * 62.56814 * 5 4 3 8 8 H 1.07999 * 120.00357 * 240.26739 * 7 5 4 9 9 C 1.37884 * 120.00201 * 60.25828 * 7 5 4 10 10 N 1.31518 * 119.99741 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 120.00099 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46764 * 90.00677 * 11 9 7 13 13 H 1.48497 * 109.46868 * 210.00084 * 11 9 7 14 14 H 1.48491 * 109.47420 * 330.00377 * 11 9 7 15 15 C 1.52972 * 108.93689 * 302.69720 * 5 4 3 16 16 H 1.09000 * 109.54104 * 298.54184 * 15 5 4 17 17 C 1.52722 * 110.23880 * 177.76642 * 15 5 4 18 18 C 1.53202 * 108.78472 * 182.82079 * 17 15 5 19 19 O 1.42838 * 109.71077 * 57.23220 * 18 17 15 20 20 C 1.43026 * 114.43016 * 299.56637 * 19 18 17 21 21 C 1.46676 * 111.00073 * 236.25854 * 2 1 3 22 22 H 1.09000 * 109.43111 * 66.53503 * 21 2 1 23 23 H 1.08998 * 109.46943 * 63.95507 * 1 2 3 24 24 H 1.08996 * 109.47120 * 183.95285 * 1 2 3 25 25 H 1.08996 * 109.47393 * 303.95013 * 1 2 3 26 26 H 1.08998 * 109.41122 * 54.66375 * 3 2 1 27 27 H 1.09000 * 109.35680 * 294.84651 * 3 2 1 28 28 H 1.08995 * 109.45713 * 298.43365 * 4 3 2 29 29 H 1.08998 * 109.45565 * 178.48523 * 4 3 2 30 30 H 0.96996 * 119.99845 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.60261 * 63.03394 * 17 15 5 32 32 H 1.09007 * 109.62489 * 302.61386 * 17 15 5 33 33 H 1.09005 * 109.42973 * 297.16153 * 18 17 15 34 34 H 1.08999 * 109.43415 * 177.30701 * 18 17 15 35 35 H 1.09005 * 109.53714 * 300.90429 * 20 19 18 36 36 H 1.09000 * 109.53591 * 180.67050 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5195 1.3431 0.1312 5 6 4.1188 0.5384 -1.0269 6 1 5.2003 0.4750 -0.9066 7 6 3.7950 1.2160 -2.3334 8 1 3.2215 0.6939 -3.0850 9 6 4.2307 2.5027 -2.5693 10 7 4.9293 3.1385 -1.6542 11 14 3.8300 3.3424 -4.1891 12 1 2.5398 4.0674 -4.0649 13 1 4.9084 4.3056 -4.5274 14 1 3.7230 2.3220 -5.2625 15 6 3.5186 -0.8686 -1.0167 16 1 3.7731 -1.3668 -0.0812 17 6 4.0548 -1.6803 -2.1939 18 6 3.3805 -3.0560 -2.1926 19 8 1.9623 -2.8974 -2.2553 20 6 1.3996 -2.1690 -1.1606 21 6 1.9947 -0.7606 -1.1387 22 1 1.7425 -0.2460 -2.0659 23 1 -0.3633 0.4512 -0.9233 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3634 0.5739 0.8524 26 1 1.5704 1.9233 0.8386 27 1 1.7217 1.8641 -0.9332 28 1 3.7937 0.8768 1.0774 29 1 3.9057 2.3620 0.1035 30 1 5.2355 4.0438 -1.8199 31 1 5.1332 -1.8022 -2.0931 32 1 3.8296 -1.1643 -3.1273 33 1 3.6458 -3.5889 -1.2794 34 1 3.7200 -3.6272 -3.0566 35 1 1.6333 -2.6780 -0.2254 36 1 0.3182 -2.1060 -1.2821 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260450896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:52 Heat of formation + Delta-G solvation = -49.744556 kcal Electronic energy + Delta-G solvation = -17090.277767 eV Core-core repulsion = 14573.862953 eV Total energy + Delta-G solvation = -2516.414814 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63086 -36.80941 -34.25162 -32.16937 -30.55526 -29.56453 -26.56300 -24.77104 -24.25593 -22.97197 -20.74205 -19.76762 -18.81982 -15.97222 -15.70604 -15.57489 -14.78555 -14.52659 -14.37104 -13.69824 -13.37626 -13.12680 -12.83329 -12.47110 -12.11493 -11.57515 -11.20590 -11.05195 -10.99543 -10.94383 -10.66953 -10.49507 -10.38843 -10.05778 -9.82100 -9.43308 -9.21758 -8.74170 -8.53223 -8.27874 -7.55220 -5.99087 -4.03360 3.27866 3.35666 3.38981 4.20737 4.42662 4.73388 5.30179 5.39440 5.50372 5.59555 5.65142 5.70970 5.81643 5.87568 5.95794 6.09557 6.19518 6.22516 6.36568 6.44621 6.54893 6.63054 6.74056 6.86336 7.00219 7.15369 7.21634 7.41074 7.52508 7.65398 7.76160 7.88809 8.00385 8.16182 8.46367 8.98534 9.60029 11.06689 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025929 B = 0.011716 C = 0.010034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.596405 B = 2389.409993 C = 2789.939293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.536 5.536 3 C 0.072 3.928 4 C -0.107 4.107 5 C 0.051 3.949 6 H 0.027 0.973 7 C -0.502 4.502 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.890 5.890 11 Si 0.883 3.117 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.275 1.275 15 C -0.070 4.070 16 H 0.050 0.950 17 C -0.141 4.141 18 C 0.059 3.941 19 O -0.389 6.389 20 C 0.066 3.934 21 C 0.065 3.935 22 H 0.058 0.942 23 H 0.020 0.980 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.023 0.977 29 H 0.095 0.905 30 H 0.259 0.741 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 -7.204 1.981 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.055 4.055 4 C -0.145 4.145 5 C 0.033 3.967 6 H 0.045 0.955 7 C -0.540 4.540 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.529 5.529 11 Si 0.711 3.289 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.089 4.089 16 H 0.068 0.932 17 C -0.179 4.179 18 C -0.017 4.017 19 O -0.307 6.307 20 C -0.011 4.011 21 C -0.044 4.044 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.898 -7.337 2.281 9.112 hybrid contribution -0.351 1.171 -1.378 1.842 sum -5.250 -6.166 0.903 8.148 Atomic orbital electron populations 1.22374 0.89444 1.00976 0.99973 1.62069 1.05802 1.15763 1.42561 1.22000 0.97572 0.86702 0.99230 1.21588 0.92234 1.03984 0.96689 1.18708 0.95276 0.88502 0.94223 0.95481 1.21162 1.33649 0.98577 1.00647 0.92669 1.24929 0.95196 0.97485 0.96260 1.69862 1.37172 1.12446 1.33422 0.86738 0.77926 0.79560 0.84682 1.20909 1.21286 1.19978 1.21135 0.92913 0.98994 0.95825 0.93171 1.22132 0.99775 0.94730 1.01304 1.22660 0.80977 0.97397 1.00710 1.87835 1.21342 1.74760 1.46799 1.22659 0.97227 0.91883 0.89339 1.22114 0.96315 0.92969 0.93004 0.92456 0.96130 0.92120 0.92110 0.93457 0.94021 0.95830 0.88653 0.93110 0.91488 0.90032 0.94062 0.89796 0.93184 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.06 60.07 0.54 0.87 16 2 N -0.54 -10.28 4.79 -234.92 -1.13 -11.40 16 3 C 0.07 1.53 5.24 -3.80 -0.02 1.51 16 4 C -0.11 -2.50 5.40 -26.63 -0.14 -2.64 16 5 C 0.05 1.24 2.19 -91.67 -0.20 1.04 16 6 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.50 -13.08 6.03 -34.44 -0.21 -13.29 16 8 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 9 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 10 N -0.89 -24.73 11.33 55.43 0.63 -24.11 16 11 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 C -0.07 -1.44 1.92 -90.64 -0.17 -1.62 16 16 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 17 C -0.14 -2.66 5.23 -26.77 -0.14 -2.80 16 18 C 0.06 0.96 6.84 37.26 0.25 1.21 16 19 O -0.39 -6.97 10.75 -35.23 -0.38 -7.35 16 20 C 0.07 1.13 5.69 37.11 0.21 1.34 16 21 C 0.06 1.27 1.63 -67.75 -0.11 1.16 16 22 H 0.06 1.29 6.66 -51.93 -0.35 0.95 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.84 6.35 -51.93 -0.33 0.51 16 25 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 26 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 27 H 0.04 0.98 7.36 -51.93 -0.38 0.60 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 2.48 6.04 -51.93 -0.31 2.16 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.70 6.48 -51.93 -0.34 1.37 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.28 6.54 -51.93 -0.34 0.94 16 LS Contribution 267.03 15.07 4.02 4.02 Total: -1.00 -27.44 267.03 -7.66 -35.10 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.70 Total: -0.65 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -0.08 Total: -11.64 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.50 Total: -35.51 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.38 Total: -7.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.44 -7.66 -35.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260450896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.648 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds