Wall clock time and date at job start Mon Mar 30 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46961 * 110.99781 * 2 1 4 4 C 1.52976 * 109.83401 * 174.77028 * 3 2 1 5 5 C 1.53227 * 109.55494 * 58.45742 * 4 3 2 6 6 H 1.09002 * 109.57897 * 182.82863 * 5 4 3 7 7 C 1.50695 * 109.57874 * 62.56814 * 5 4 3 8 8 H 1.07999 * 120.00357 * 240.26739 * 7 5 4 9 9 C 1.37884 * 120.00201 * 60.25828 * 7 5 4 10 10 N 1.31518 * 119.99741 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 120.00099 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46764 * 90.00677 * 11 9 7 13 13 H 1.48497 * 109.46868 * 210.00084 * 11 9 7 14 14 H 1.48491 * 109.47420 * 330.00377 * 11 9 7 15 15 C 1.52972 * 108.93689 * 302.69720 * 5 4 3 16 16 H 1.09000 * 109.54104 * 298.54184 * 15 5 4 17 17 C 1.52722 * 110.23880 * 177.76642 * 15 5 4 18 18 C 1.53202 * 108.78472 * 182.82079 * 17 15 5 19 19 O 1.42838 * 109.71077 * 57.23220 * 18 17 15 20 20 C 1.43026 * 114.43016 * 299.56637 * 19 18 17 21 21 C 1.46676 * 111.00073 * 236.25854 * 2 1 3 22 22 H 1.09000 * 109.43111 * 66.53503 * 21 2 1 23 23 H 1.08998 * 109.46943 * 63.95507 * 1 2 3 24 24 H 1.08996 * 109.47120 * 183.95285 * 1 2 3 25 25 H 1.08996 * 109.47393 * 303.95013 * 1 2 3 26 26 H 1.08998 * 109.41122 * 54.66375 * 3 2 1 27 27 H 1.09000 * 109.35680 * 294.84651 * 3 2 1 28 28 H 1.08995 * 109.45713 * 298.43365 * 4 3 2 29 29 H 1.08998 * 109.45565 * 178.48523 * 4 3 2 30 30 H 0.96996 * 119.99845 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.60261 * 63.03394 * 17 15 5 32 32 H 1.09007 * 109.62489 * 302.61386 * 17 15 5 33 33 H 1.09005 * 109.42973 * 297.16153 * 18 17 15 34 34 H 1.08999 * 109.43415 * 177.30701 * 18 17 15 35 35 H 1.09005 * 109.53714 * 300.90429 * 20 19 18 36 36 H 1.09000 * 109.53591 * 180.67050 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5195 1.3431 0.1312 5 6 4.1188 0.5384 -1.0269 6 1 5.2003 0.4750 -0.9066 7 6 3.7950 1.2160 -2.3334 8 1 3.2215 0.6939 -3.0850 9 6 4.2307 2.5027 -2.5693 10 7 4.9293 3.1385 -1.6542 11 14 3.8300 3.3424 -4.1891 12 1 2.5398 4.0674 -4.0649 13 1 4.9084 4.3056 -4.5274 14 1 3.7230 2.3220 -5.2625 15 6 3.5186 -0.8686 -1.0167 16 1 3.7731 -1.3668 -0.0812 17 6 4.0548 -1.6803 -2.1939 18 6 3.3805 -3.0560 -2.1926 19 8 1.9623 -2.8974 -2.2553 20 6 1.3996 -2.1690 -1.1606 21 6 1.9947 -0.7606 -1.1387 22 1 1.7425 -0.2460 -2.0659 23 1 -0.3633 0.4512 -0.9233 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3634 0.5739 0.8524 26 1 1.5704 1.9233 0.8386 27 1 1.7217 1.8641 -0.9332 28 1 3.7937 0.8768 1.0774 29 1 3.9057 2.3620 0.1035 30 1 5.2355 4.0438 -1.8199 31 1 5.1332 -1.8022 -2.0931 32 1 3.8296 -1.1643 -3.1273 33 1 3.6458 -3.5889 -1.2794 34 1 3.7200 -3.6272 -3.0566 35 1 1.6333 -2.6780 -0.2254 36 1 0.3182 -2.1060 -1.2821 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260450896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:52 Heat of formation + Delta-G solvation = -67.860235 kcal Electronic energy + Delta-G solvation = -17091.063322 eV Core-core repulsion = 14573.862953 eV Total energy + Delta-G solvation = -2517.200369 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18108 -38.30974 -35.97516 -33.98668 -32.32640 -31.00594 -28.28967 -26.39613 -25.93850 -24.52009 -22.31539 -21.34984 -20.67514 -17.81410 -17.21174 -17.09203 -16.60065 -16.04424 -15.97811 -15.29253 -14.96276 -14.78559 -14.33717 -14.15620 -13.67863 -13.26707 -12.94084 -12.85795 -12.58550 -12.55030 -12.32483 -12.11502 -12.06567 -11.84619 -11.60883 -11.02552 -10.95253 -10.61664 -10.38121 -10.07240 -9.15581 -8.06731 -6.15764 1.35176 1.38244 1.46283 2.41652 2.84660 3.21007 3.27766 3.91944 4.06855 4.09943 4.24820 4.38191 4.44861 4.51649 4.57688 4.67636 4.73447 4.73890 4.81608 4.89013 4.98850 5.02881 5.12033 5.26631 5.28505 5.39710 5.50570 5.55627 5.63709 5.82912 5.99736 6.20843 6.32215 6.41797 6.47859 6.92277 7.49495 8.98098 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025929 B = 0.011716 C = 0.010034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.596405 B = 2389.409993 C = 2789.939293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.536 5.536 3 C 0.082 3.918 4 C -0.103 4.103 5 C 0.048 3.952 6 H -0.007 1.007 7 C -0.500 4.500 8 H 0.047 0.953 9 C 0.016 3.984 10 N -0.916 5.916 11 Si 0.937 3.063 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 C -0.069 4.069 16 H 0.056 0.944 17 C -0.139 4.139 18 C 0.063 3.937 19 O -0.400 6.400 20 C 0.073 3.927 21 C 0.069 3.931 22 H 0.023 0.977 23 H 0.015 0.985 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.012 0.988 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.258 0.742 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -8.787 2.174 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.046 4.046 4 C -0.142 4.142 5 C 0.030 3.970 6 H 0.011 0.989 7 C -0.538 4.538 8 H 0.065 0.935 9 C -0.182 4.182 10 N -0.556 5.556 11 Si 0.764 3.236 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.197 1.197 15 C -0.087 4.087 16 H 0.074 0.926 17 C -0.177 4.177 18 C -0.013 4.013 19 O -0.318 6.318 20 C -0.004 4.004 21 C -0.040 4.040 22 H 0.041 0.959 23 H 0.033 0.967 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.321 -8.933 2.470 11.218 hybrid contribution 0.112 1.663 -1.410 2.183 sum -6.209 -7.269 1.060 9.618 Atomic orbital electron populations 1.22512 0.86851 1.03058 1.00478 1.62073 1.08122 1.13964 1.41986 1.21791 0.96051 0.88260 0.98457 1.21447 0.93992 1.02074 0.96637 1.18672 0.93491 0.91075 0.93807 0.98916 1.21299 1.32809 0.98576 1.01148 0.93525 1.25568 0.95427 0.98254 0.98937 1.69989 1.38199 1.12589 1.34828 0.85880 0.77666 0.78594 0.81495 1.20650 1.21036 1.19712 1.21069 0.93897 0.96893 0.96891 0.92564 1.22077 1.00393 0.96214 0.99047 1.22736 0.79961 0.95608 1.02972 1.87834 1.22101 1.74536 1.47318 1.22676 0.98135 0.89684 0.89929 1.22039 0.95633 0.94678 0.91630 0.95878 0.96659 0.89431 0.90398 0.91557 0.96971 0.95126 0.91655 0.93267 0.91122 0.92723 0.91959 0.87380 0.91609 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.06 127.69 1.16 1.69 16 2 N -0.54 -19.59 4.79 -897.16 -4.30 -23.89 16 3 C 0.08 3.47 5.24 86.28 0.45 3.92 16 4 C -0.10 -4.92 5.40 30.66 0.17 -4.76 16 5 C 0.05 2.38 2.19 -11.47 -0.03 2.36 16 6 H -0.01 -0.41 8.14 -2.39 -0.02 -0.42 16 7 C -0.50 -26.78 6.03 25.60 0.15 -26.62 16 8 H 0.05 2.54 5.68 -2.91 -0.02 2.53 16 9 C 0.02 0.89 5.30 84.66 0.45 1.34 16 10 N -0.92 -52.43 11.33 21.45 0.24 -52.19 16 11 Si 0.94 43.95 29.54 68.60 2.03 45.98 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 15 C -0.07 -2.81 1.92 -10.81 -0.02 -2.83 16 16 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 17 C -0.14 -5.15 5.23 30.57 0.16 -4.99 16 18 C 0.06 1.87 6.84 72.05 0.49 2.37 16 19 O -0.40 -13.13 10.75 -148.98 -1.60 -14.73 16 20 C 0.07 2.25 5.69 71.95 0.41 2.66 16 21 C 0.07 2.64 1.63 45.01 0.07 2.71 16 22 H 0.02 1.05 6.66 -2.39 -0.02 1.03 16 23 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.09 2.05 6.35 -2.39 -0.02 2.03 16 25 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 26 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 27 H 0.01 0.58 7.36 -2.39 -0.02 0.56 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 3.51 6.04 -2.39 -0.01 3.50 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.05 2.30 6.48 -2.38 -0.02 2.29 16 33 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.10 2.78 6.54 -2.39 -0.02 2.77 16 Total: -1.00 -59.71 267.03 0.88 -58.83 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.05 Total: 8.15 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 3.47 Total: -22.16 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -4.05 Total: -76.08 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -1.60 Total: -14.73 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -59.71 0.88 -58.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260450896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.031 kcal (2) G-P(sol) polarization free energy of solvation -59.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds