Wall clock time and date at job start Mon Mar 30 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46836 * 111.00053 * 2 1 4 4 C 1.53050 * 109.43365 * 185.89535 * 3 2 1 5 5 C 1.53080 * 109.06448 * 300.29631 * 4 3 2 6 6 H 1.08997 * 109.86954 * 298.20168 * 5 4 3 7 7 C 1.50693 * 109.34223 * 177.99172 * 5 4 3 8 8 H 1.08005 * 120.00631 * 240.51896 * 7 5 4 9 9 C 1.37881 * 120.00023 * 60.50833 * 7 5 4 10 10 N 1.31519 * 119.99965 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00459 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47165 * 90.00247 * 11 9 7 13 13 H 1.48504 * 109.47326 * 210.00446 * 11 9 7 14 14 H 1.48503 * 109.46810 * 330.00458 * 11 9 7 15 15 C 1.53138 * 109.10119 * 58.25553 * 5 4 3 16 16 H 1.08998 * 110.22354 * 62.93603 * 15 5 4 17 17 C 1.53243 * 109.26313 * 183.30007 * 15 5 4 18 18 C 1.53099 * 108.91736 * 61.81403 * 17 15 5 19 19 O 1.42891 * 109.47735 * 57.77748 * 18 17 15 20 20 C 1.42923 * 114.14578 * 298.98330 * 19 18 17 21 21 C 1.46688 * 110.99959 * 124.41508 * 2 1 3 22 22 H 1.08998 * 109.41319 * 54.57387 * 21 2 1 23 23 H 1.08995 * 109.47081 * 63.95077 * 1 2 3 24 24 H 1.08998 * 109.47221 * 183.95499 * 1 2 3 25 25 H 1.09007 * 109.46883 * 303.95297 * 1 2 3 26 26 H 1.08998 * 109.47706 * 305.88387 * 3 2 1 27 27 H 1.09002 * 109.47571 * 65.90581 * 3 2 1 28 28 H 1.08998 * 109.51365 * 60.52900 * 4 3 2 29 29 H 1.09003 * 109.51406 * 180.68611 * 4 3 2 30 30 H 0.96998 * 120.00671 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.52915 * 302.04062 * 17 15 5 32 32 H 1.09000 * 109.77315 * 181.73722 * 17 15 5 33 33 H 1.08999 * 109.46702 * 297.77620 * 18 17 15 34 34 H 1.08993 * 109.46991 * 177.78646 * 18 17 15 35 35 H 1.08999 * 109.49469 * 300.99622 * 20 19 18 36 36 H 1.09011 * 109.50608 * 180.94071 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3317 -0.1482 5 6 4.1141 0.5438 1.0210 6 1 3.8800 1.0425 1.9615 7 6 5.6095 0.4592 0.8550 8 1 6.0892 -0.5042 0.7641 9 6 6.3655 1.6117 0.8191 10 7 5.7815 2.7849 0.9301 11 14 8.2191 1.5070 0.6126 12 1 8.5585 1.5354 -0.8328 13 1 8.8591 2.6608 1.2942 14 1 8.7131 0.2415 1.2124 15 6 3.5200 -0.8676 1.0290 16 1 3.7954 -1.3975 0.1172 17 6 4.0512 -1.6330 2.2456 18 6 3.6014 -0.9134 3.5199 19 8 2.1754 -0.8232 3.5380 20 6 1.6223 -0.0866 2.4452 21 6 1.9947 -0.7740 1.1298 22 1 1.5682 -1.7769 1.1115 23 1 -0.3633 0.4513 -0.9232 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8525 26 1 1.5632 1.9260 -0.8326 27 1 1.7338 1.8605 0.9381 28 1 3.7799 0.8504 -1.0905 29 1 3.9113 2.3483 -0.1362 30 1 6.3133 3.5958 0.9052 31 1 5.1402 -1.6638 2.2096 32 1 3.6575 -2.6493 2.2426 33 1 4.0291 0.0889 3.5413 34 1 3.9413 -1.4721 4.3919 35 1 2.0213 0.9277 2.4512 36 1 0.5371 -0.0511 2.5423 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260450932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:54 Heat of formation + Delta-G solvation = -47.411834 kcal Electronic energy + Delta-G solvation = -17129.787529 eV Core-core repulsion = 14613.473869 eV Total energy + Delta-G solvation = -2516.313660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99607 -36.53037 -34.35929 -32.14288 -30.51309 -29.38834 -26.90806 -24.63820 -24.18309 -23.09432 -21.29536 -20.29548 -17.37886 -16.44619 -15.96958 -15.40891 -14.92940 -14.80888 -14.43810 -13.58105 -13.20753 -13.05666 -12.76616 -12.39659 -12.16502 -11.81149 -11.60245 -11.20158 -10.95737 -10.81203 -10.69544 -10.58457 -10.24150 -10.06345 -9.90202 -9.47575 -9.07677 -8.85900 -8.60688 -8.24532 -7.58050 -6.00075 -4.04893 3.29495 3.36763 3.39208 4.26506 4.42692 4.65359 5.29952 5.38104 5.40450 5.53509 5.68586 5.74222 5.79506 5.85157 5.96123 6.04764 6.08843 6.10808 6.29975 6.39451 6.50376 6.55411 6.60504 6.84959 6.85737 7.03070 7.18342 7.36278 7.54173 7.62036 7.80997 7.81435 8.00481 8.11395 8.44812 8.97574 9.59311 11.06031 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031062 B = 0.010852 C = 0.009048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.207016 B = 2579.457084 C = 3093.927280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.531 5.531 3 C 0.050 3.950 4 C -0.107 4.107 5 C 0.052 3.948 6 H 0.028 0.972 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.888 3.112 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.073 4.073 16 H 0.068 0.932 17 C -0.138 4.138 18 C 0.058 3.942 19 O -0.392 6.392 20 C 0.031 3.969 21 C 0.061 3.939 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.259 0.741 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 -4.381 0.975 8.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.256 5.256 3 C -0.077 4.077 4 C -0.145 4.145 5 C 0.034 3.966 6 H 0.046 0.954 7 C -0.545 4.545 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.716 3.284 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.092 4.092 16 H 0.086 0.914 17 C -0.176 4.176 18 C -0.018 4.018 19 O -0.310 6.310 20 C -0.047 4.047 21 C -0.048 4.048 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.958 -4.495 0.702 8.313 hybrid contribution 0.845 0.559 0.323 1.064 sum -6.113 -3.935 1.026 7.342 Atomic orbital electron populations 1.22363 0.89011 1.01054 1.00177 1.62072 1.06032 1.15207 1.42280 1.22359 0.99240 0.87323 0.98809 1.21692 0.89174 1.04146 0.99520 1.18804 0.94503 0.88733 0.94558 0.95416 1.21175 0.91567 0.92376 1.49387 0.92603 1.24951 0.98187 0.95537 0.95260 1.69865 1.35150 0.97293 1.50793 0.86663 0.86036 0.77531 0.78174 1.20779 1.21384 1.19982 1.21310 0.90795 0.99994 0.97118 0.91391 1.22107 1.02408 0.97773 0.95339 1.22636 0.80304 1.01146 0.97709 1.87780 1.21432 1.75274 1.46496 1.23244 0.97560 0.96259 0.87643 1.22275 0.97876 0.96628 0.88057 0.90996 0.91875 0.92065 0.96140 0.92509 0.95537 0.93712 0.88788 0.93079 0.89812 0.93277 0.91685 0.90142 0.92066 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.13 60.06 0.55 0.87 16 2 N -0.53 -9.60 4.85 -234.97 -1.14 -10.73 16 3 C 0.05 0.97 5.17 -3.83 -0.02 0.95 16 4 C -0.11 -2.48 5.12 -26.66 -0.14 -2.62 16 5 C 0.05 1.24 1.13 -91.66 -0.10 1.13 16 6 H 0.03 0.72 4.87 -51.93 -0.25 0.47 16 7 C -0.51 -13.25 7.81 -34.44 -0.27 -13.51 16 8 H 0.06 1.45 6.97 -52.48 -0.37 1.08 16 9 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 10 N -0.89 -24.71 11.37 55.43 0.63 -24.08 16 11 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C -0.07 -1.51 2.16 -90.35 -0.20 -1.71 16 16 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 17 C -0.14 -2.61 5.48 -26.55 -0.15 -2.75 16 18 C 0.06 1.08 6.56 37.21 0.24 1.33 16 19 O -0.39 -7.47 10.76 -35.23 -0.38 -7.85 16 20 C 0.03 0.57 5.20 37.17 0.19 0.77 16 21 C 0.06 1.12 2.36 -67.74 -0.16 0.96 16 22 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.80 8.02 -51.93 -0.42 0.39 16 25 H 0.02 0.28 6.93 -51.93 -0.36 -0.08 16 26 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 27 H 0.03 0.52 6.20 -51.93 -0.32 0.20 16 28 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.08 1.64 6.80 -51.93 -0.35 1.29 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.35 6.45 -51.93 -0.33 1.01 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.24 4.84 -51.93 -0.25 0.99 16 36 H 0.08 1.25 6.84 -51.92 -0.36 0.89 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -27.18 262.52 -7.51 -34.69 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.42 Total: 1.20 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.14 Total: -13.03 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.51 Total: -34.81 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.38 Total: -7.85 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.18 -7.51 -34.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260450932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.721 kcal (2) G-P(sol) polarization free energy of solvation -27.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds