Wall clock time and date at job start Mon Mar 30 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46836 * 111.00053 * 2 1 4 4 C 1.53050 * 109.43365 * 185.89535 * 3 2 1 5 5 C 1.53080 * 109.06448 * 300.29631 * 4 3 2 6 6 H 1.08997 * 109.86954 * 298.20168 * 5 4 3 7 7 C 1.50693 * 109.34223 * 177.99172 * 5 4 3 8 8 H 1.08005 * 120.00631 * 240.51896 * 7 5 4 9 9 C 1.37881 * 120.00023 * 60.50833 * 7 5 4 10 10 N 1.31519 * 119.99965 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00459 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47165 * 90.00247 * 11 9 7 13 13 H 1.48504 * 109.47326 * 210.00446 * 11 9 7 14 14 H 1.48503 * 109.46810 * 330.00458 * 11 9 7 15 15 C 1.53138 * 109.10119 * 58.25553 * 5 4 3 16 16 H 1.08998 * 110.22354 * 62.93603 * 15 5 4 17 17 C 1.53243 * 109.26313 * 183.30007 * 15 5 4 18 18 C 1.53099 * 108.91736 * 61.81403 * 17 15 5 19 19 O 1.42891 * 109.47735 * 57.77748 * 18 17 15 20 20 C 1.42923 * 114.14578 * 298.98330 * 19 18 17 21 21 C 1.46688 * 110.99959 * 124.41508 * 2 1 3 22 22 H 1.08998 * 109.41319 * 54.57387 * 21 2 1 23 23 H 1.08995 * 109.47081 * 63.95077 * 1 2 3 24 24 H 1.08998 * 109.47221 * 183.95499 * 1 2 3 25 25 H 1.09007 * 109.46883 * 303.95297 * 1 2 3 26 26 H 1.08998 * 109.47706 * 305.88387 * 3 2 1 27 27 H 1.09002 * 109.47571 * 65.90581 * 3 2 1 28 28 H 1.08998 * 109.51365 * 60.52900 * 4 3 2 29 29 H 1.09003 * 109.51406 * 180.68611 * 4 3 2 30 30 H 0.96998 * 120.00671 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.52915 * 302.04062 * 17 15 5 32 32 H 1.09000 * 109.77315 * 181.73722 * 17 15 5 33 33 H 1.08999 * 109.46702 * 297.77620 * 18 17 15 34 34 H 1.08993 * 109.46991 * 177.78646 * 18 17 15 35 35 H 1.08999 * 109.49469 * 300.99622 * 20 19 18 36 36 H 1.09011 * 109.50608 * 180.94071 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3317 -0.1482 5 6 4.1141 0.5438 1.0210 6 1 3.8800 1.0425 1.9615 7 6 5.6095 0.4592 0.8550 8 1 6.0892 -0.5042 0.7641 9 6 6.3655 1.6117 0.8191 10 7 5.7815 2.7849 0.9301 11 14 8.2191 1.5070 0.6126 12 1 8.5585 1.5354 -0.8328 13 1 8.8591 2.6608 1.2942 14 1 8.7131 0.2415 1.2124 15 6 3.5200 -0.8676 1.0290 16 1 3.7954 -1.3975 0.1172 17 6 4.0512 -1.6330 2.2456 18 6 3.6014 -0.9134 3.5199 19 8 2.1754 -0.8232 3.5380 20 6 1.6223 -0.0866 2.4452 21 6 1.9947 -0.7740 1.1298 22 1 1.5682 -1.7769 1.1115 23 1 -0.3633 0.4513 -0.9232 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8525 26 1 1.5632 1.9260 -0.8326 27 1 1.7338 1.8605 0.9381 28 1 3.7799 0.8504 -1.0905 29 1 3.9113 2.3483 -0.1362 30 1 6.3133 3.5958 0.9052 31 1 5.1402 -1.6638 2.2096 32 1 3.6575 -2.6493 2.2426 33 1 4.0291 0.0889 3.5413 34 1 3.9413 -1.4721 4.3919 35 1 2.0213 0.9277 2.4512 36 1 0.5371 -0.0511 2.5423 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260450932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:54 Heat of formation + Delta-G solvation = -65.308899 kcal Electronic energy + Delta-G solvation = -17130.563604 eV Core-core repulsion = 14613.473869 eV Total energy + Delta-G solvation = -2517.089735 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.54914 -38.02814 -36.09757 -33.95474 -32.25291 -30.84883 -28.62705 -26.08585 -25.87675 -24.70071 -23.03246 -21.85846 -19.08087 -18.36730 -17.46021 -16.94750 -16.62866 -16.45285 -16.07624 -15.08190 -14.70404 -14.62581 -14.44085 -14.00806 -13.83005 -13.31779 -12.97140 -12.86532 -12.70992 -12.59839 -12.48976 -12.10262 -12.00437 -11.84072 -11.57638 -11.17551 -10.72012 -10.70538 -10.43414 -10.14221 -9.02460 -8.05215 -6.16036 1.40780 1.42893 1.51224 2.45021 2.82994 3.20650 3.24493 3.88910 3.94393 4.14138 4.15602 4.30362 4.40603 4.43037 4.47771 4.60787 4.68768 4.79651 4.81063 4.92273 4.97810 5.02385 5.04547 5.12089 5.29546 5.32680 5.43156 5.56760 5.66343 5.99690 6.03925 6.15666 6.28482 6.40327 6.44623 6.94150 7.50679 8.99341 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031062 B = 0.010852 C = 0.009048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.207016 B = 2579.457084 C = 3093.927280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.540 5.540 3 C 0.061 3.939 4 C -0.103 4.103 5 C 0.056 3.944 6 H 0.003 0.997 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.014 3.986 10 N -0.918 5.918 11 Si 0.945 3.055 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.268 1.268 15 C -0.074 4.074 16 H 0.055 0.945 17 C -0.134 4.134 18 C 0.062 3.938 19 O -0.393 6.393 20 C 0.035 3.965 21 C 0.066 3.934 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.258 0.742 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.109 0.891 35 H 0.036 0.964 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 -5.767 1.077 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.067 4.067 4 C -0.141 4.141 5 C 0.038 3.962 6 H 0.021 0.979 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.184 4.184 10 N -0.558 5.558 11 Si 0.772 3.228 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.172 4.172 18 C -0.014 4.014 19 O -0.311 6.311 20 C -0.043 4.043 21 C -0.043 4.043 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.127 0.873 35 H 0.054 0.946 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.064 -5.895 0.803 10.021 hybrid contribution 1.168 0.990 0.280 1.556 sum -6.896 -4.905 1.084 8.532 Atomic orbital electron populations 1.22474 0.86148 1.02666 1.01329 1.62025 1.08579 1.13804 1.42103 1.22125 0.96513 0.88774 0.99240 1.21497 0.92212 1.01903 0.98490 1.18679 0.93533 0.90660 0.93324 0.97940 1.21519 0.93240 0.92176 1.48723 0.92914 1.25646 1.02069 0.95363 0.95334 1.70001 1.36365 0.97710 1.51771 0.85753 0.81478 0.77609 0.77995 1.20605 1.21337 1.19207 1.21224 0.92766 0.97865 0.97427 0.92652 1.22057 1.01672 0.98833 0.94619 1.22619 0.80187 0.99820 0.98804 1.87779 1.21365 1.75122 1.46831 1.23249 0.98809 0.94791 0.87452 1.22211 0.96113 0.97633 0.88335 0.89143 0.90458 0.90154 0.95326 0.90880 0.95992 0.95268 0.91926 0.93291 0.91079 0.90743 0.94784 0.87263 0.94617 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.13 127.69 1.17 1.71 16 2 N -0.54 -18.38 4.85 -897.32 -4.35 -22.74 16 3 C 0.06 2.34 5.17 86.33 0.45 2.79 16 4 C -0.10 -4.88 5.12 30.64 0.16 -4.72 16 5 C 0.06 2.73 1.13 -11.47 -0.01 2.72 16 6 H 0.00 0.14 4.87 -2.39 -0.01 0.13 16 7 C -0.52 -27.69 7.81 25.60 0.20 -27.49 16 8 H 0.05 2.78 6.97 -2.91 -0.02 2.76 16 9 C 0.01 0.76 5.30 84.65 0.45 1.21 16 10 N -0.92 -52.42 11.37 21.45 0.24 -52.18 16 11 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 C -0.07 -3.01 2.16 -10.62 -0.02 -3.03 16 16 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.13 -4.88 5.48 30.71 0.17 -4.72 16 18 C 0.06 2.23 6.56 72.02 0.47 2.71 16 19 O -0.39 -14.20 10.76 -148.98 -1.60 -15.80 16 20 C 0.04 1.23 5.20 71.99 0.37 1.60 16 21 C 0.07 2.31 2.36 45.01 0.11 2.42 16 22 H 0.09 2.89 8.04 -2.39 -0.02 2.87 16 23 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.08 1.76 8.02 -2.39 -0.02 1.74 16 25 H 0.03 0.69 6.93 -2.38 -0.02 0.67 16 26 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 27 H 0.02 0.86 6.20 -2.39 -0.01 0.85 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 3.36 6.15 -2.39 -0.01 3.34 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.07 2.76 6.80 -2.39 -0.02 2.74 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.03 1.44 6.45 -2.39 -0.02 1.42 16 34 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.04 1.44 4.84 -2.39 -0.01 1.43 16 36 H 0.10 3.02 6.84 -2.38 -0.02 3.00 16 Total: -1.00 -58.60 262.52 0.88 -57.72 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.06 Total: 12.42 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 3.50 Total: -24.81 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -4.11 Total: -74.92 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -1.60 Total: -15.80 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -58.60 0.88 -57.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260450932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.588 kcal (2) G-P(sol) polarization free energy of solvation -58.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds