Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47452 * 2 1 4 4 N 1.46504 * 109.47305 * 120.00014 * 2 1 3 5 5 C 1.46760 * 124.34750 * 119.94499 * 4 2 1 6 6 C 1.54478 * 105.47554 * 197.04323 * 5 4 2 7 7 C 1.54630 * 101.76156 * 334.58742 * 6 5 4 8 8 H 1.09004 * 110.59899 * 266.06118 * 7 6 5 9 9 C 1.52997 * 110.48523 * 143.47779 * 7 6 5 10 10 H 1.09000 * 109.47140 * 303.76833 * 9 7 6 11 11 C 1.53006 * 109.47164 * 183.76885 * 9 7 6 12 12 C 1.50699 * 109.47265 * 63.77085 * 9 7 6 13 13 H 1.08003 * 120.00271 * 0.02562 * 12 9 7 14 14 C 1.37879 * 120.00161 * 179.97438 * 12 9 7 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00268 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46809 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46948 * 120.00386 * 16 14 12 19 19 H 1.48497 * 109.47378 * 240.00673 * 16 14 12 20 20 C 1.34412 * 124.35047 * 299.97957 * 4 2 1 21 21 O 1.21282 * 124.94295 * 359.59629 * 20 4 2 22 22 H 1.08999 * 109.46786 * 300.00094 * 1 2 3 23 23 H 1.08995 * 109.47060 * 59.99347 * 1 2 3 24 24 H 1.08999 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47235 * 240.00158 * 2 1 3 26 26 H 1.08995 * 109.47149 * 300.00763 * 3 2 1 27 27 H 1.09001 * 109.46772 * 59.99874 * 3 2 1 28 28 H 1.08996 * 109.47032 * 179.97438 * 3 2 1 29 29 H 1.09009 * 110.24846 * 316.04455 * 5 4 2 30 30 H 1.09001 * 110.24256 * 77.95199 * 5 4 2 31 31 H 1.09000 * 110.96766 * 216.46960 * 6 5 4 32 32 H 1.08992 * 110.97060 * 92.70393 * 6 5 4 33 33 H 1.09001 * 109.47002 * 59.99738 * 11 9 7 34 34 H 1.08993 * 109.46955 * 180.02562 * 11 9 7 35 35 H 1.09000 * 109.47050 * 300.00004 * 11 9 7 36 36 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8647 -1.8894 1.1727 6 6 2.7597 -2.4959 2.5895 7 6 2.4037 -1.2536 3.4386 8 1 3.3042 -0.8045 3.8576 9 6 1.4258 -1.6295 4.5537 10 1 0.5406 -2.0940 4.1193 11 6 1.0169 -0.3696 5.3195 12 6 2.0894 -2.5982 5.4983 13 1 3.1069 -2.9140 5.3213 14 6 1.3977 -3.0807 6.5891 15 7 0.1589 -2.6959 6.8049 16 14 2.2199 -4.2822 7.7596 17 1 3.6048 -4.5541 7.2976 18 1 2.2597 -3.6958 9.1234 19 1 1.4492 -5.5511 7.7886 20 6 1.7484 -0.3081 2.4561 21 8 1.0768 0.6546 2.7610 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 2.4952 -2.5976 0.4309 30 1 3.8972 -1.6179 0.9526 31 1 3.7126 -2.9225 2.9028 32 1 1.9659 -3.2413 2.6370 33 1 0.5370 0.3312 4.6363 34 1 0.3206 -0.6374 6.1141 35 1 1.9021 0.0950 5.7539 36 1 -0.3279 -3.0357 7.5722 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260460055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = -47.918912 kcal Electronic energy + Delta-G solvation = -16407.945643 eV Core-core repulsion = 13891.609995 eV Total energy + Delta-G solvation = -2516.335648 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08944 -35.85294 -35.45432 -33.39249 -30.91135 -28.46323 -27.04397 -26.30159 -25.01793 -22.23470 -21.29693 -19.87586 -18.08222 -16.68022 -16.09349 -15.42578 -14.81269 -14.42127 -13.82331 -13.42808 -13.18705 -13.02070 -12.70369 -12.32483 -12.06370 -11.86755 -11.81376 -11.40674 -11.14854 -11.08410 -10.92812 -10.72627 -10.66423 -10.35147 -9.98641 -9.67794 -9.39837 -9.02289 -8.34351 -8.30302 -8.13821 -5.91718 -3.99816 3.30620 3.31815 3.40057 3.42232 3.43754 4.46644 4.85372 5.13237 5.18656 5.30828 5.36080 5.39835 5.45334 5.69446 5.71045 5.74002 5.93170 5.96875 6.00695 6.16948 6.36889 6.43519 6.56517 6.72357 6.82239 7.07918 7.20964 7.50262 7.53311 7.72855 7.81135 8.05301 8.29084 8.49749 8.91237 9.04861 9.64525 11.13261 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.046028 B = 0.007461 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.185309 B = 3751.944127 C = 4037.092692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 C -0.166 4.166 4 N -0.628 5.628 5 C 0.102 3.898 6 C -0.115 4.115 7 C -0.109 4.109 8 H 0.092 0.908 9 C 0.066 3.934 10 H 0.024 0.976 11 C -0.149 4.149 12 C -0.511 4.511 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.887 5.887 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.523 3.477 21 O -0.525 6.525 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.017 0.983 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 2.050 -13.106 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 C -0.224 4.224 4 N -0.364 5.364 5 C -0.021 4.021 6 C -0.153 4.153 7 C -0.131 4.131 8 H 0.110 0.890 9 C 0.047 3.953 10 H 0.043 0.957 11 C -0.207 4.207 12 C -0.549 4.549 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 C 0.313 3.687 21 O -0.401 6.401 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.951 2.577 -12.887 13.723 hybrid contribution 0.499 -0.774 0.625 1.113 sum 4.450 1.803 -12.262 13.169 Atomic orbital electron populations 1.22176 0.95098 1.02302 1.02943 1.20804 0.94295 0.92874 0.86973 1.22170 1.00922 0.96314 1.02990 1.48578 1.52085 1.29731 1.06036 1.22114 0.93922 0.86465 0.99575 1.22537 1.03297 0.98066 0.91420 1.22161 1.01253 0.93592 0.96078 0.89037 1.18521 0.92499 0.94098 0.90155 0.95749 1.21962 1.00270 0.97155 1.01301 1.21178 0.99353 1.25385 1.08996 0.92552 1.24962 0.94852 0.96535 0.97679 1.69935 1.09891 1.43871 1.28889 0.86587 0.79537 0.81032 0.81107 1.19826 1.21137 1.21158 1.21408 0.79178 0.84871 0.83275 1.90559 1.39399 1.29132 1.80994 0.90776 0.92130 0.92598 0.90306 0.92078 0.90840 0.92847 0.91479 0.92181 0.90029 0.89802 0.94037 0.90604 0.96338 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.20 37.16 0.34 -1.95 16 2 C 0.15 2.06 3.47 -67.93 -0.24 1.82 16 3 C -0.17 -2.14 9.20 37.16 0.34 -1.79 16 4 N -0.63 -10.09 2.83 -164.84 -0.47 -10.56 16 5 C 0.10 1.39 7.30 -3.12 -0.02 1.37 16 6 C -0.12 -1.93 6.06 -25.10 -0.15 -2.09 16 7 C -0.11 -2.27 2.45 -90.63 -0.22 -2.49 16 8 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 9 C 0.07 1.68 1.77 -91.77 -0.16 1.52 16 10 H 0.02 0.68 8.12 -51.93 -0.42 0.26 16 11 C -0.15 -3.95 8.66 37.16 0.32 -3.63 16 12 C -0.51 -13.74 8.08 -34.44 -0.28 -14.02 16 13 H 0.06 1.46 7.60 -52.48 -0.40 1.06 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 16 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.52 10.55 6.81 -10.86 -0.07 10.48 16 21 O -0.52 -12.02 12.23 5.56 0.07 -11.95 16 22 H 0.07 1.25 6.80 -51.93 -0.35 0.90 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.16 6.77 -51.93 -0.35 0.81 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.51 7.90 -51.93 -0.41 1.10 16 33 H 0.04 1.08 5.43 -51.93 -0.28 0.80 16 34 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 283.89 15.07 4.28 4.28 Total: -1.00 -30.55 283.89 -6.64 -37.19 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.89 Total: -0.66 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.24 Total: -9.18 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.16 Total: -35.82 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.07 Total: -11.95 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.55 -6.64 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.729 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds