Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47452 * 2 1 4 4 N 1.46504 * 109.47305 * 120.00014 * 2 1 3 5 5 C 1.46760 * 124.34750 * 119.94499 * 4 2 1 6 6 C 1.54478 * 105.47554 * 197.04323 * 5 4 2 7 7 C 1.54630 * 101.76156 * 334.58742 * 6 5 4 8 8 H 1.09004 * 110.59899 * 266.06118 * 7 6 5 9 9 C 1.52997 * 110.48523 * 143.47779 * 7 6 5 10 10 H 1.09000 * 109.47140 * 303.76833 * 9 7 6 11 11 C 1.53006 * 109.47164 * 183.76885 * 9 7 6 12 12 C 1.50699 * 109.47265 * 63.77085 * 9 7 6 13 13 H 1.08003 * 120.00271 * 0.02562 * 12 9 7 14 14 C 1.37879 * 120.00161 * 179.97438 * 12 9 7 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00268 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46809 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46948 * 120.00386 * 16 14 12 19 19 H 1.48497 * 109.47378 * 240.00673 * 16 14 12 20 20 C 1.34412 * 124.35047 * 299.97957 * 4 2 1 21 21 O 1.21282 * 124.94295 * 359.59629 * 20 4 2 22 22 H 1.08999 * 109.46786 * 300.00094 * 1 2 3 23 23 H 1.08995 * 109.47060 * 59.99347 * 1 2 3 24 24 H 1.08999 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47235 * 240.00158 * 2 1 3 26 26 H 1.08995 * 109.47149 * 300.00763 * 3 2 1 27 27 H 1.09001 * 109.46772 * 59.99874 * 3 2 1 28 28 H 1.08996 * 109.47032 * 179.97438 * 3 2 1 29 29 H 1.09009 * 110.24846 * 316.04455 * 5 4 2 30 30 H 1.09001 * 110.24256 * 77.95199 * 5 4 2 31 31 H 1.09000 * 110.96766 * 216.46960 * 6 5 4 32 32 H 1.08992 * 110.97060 * 92.70393 * 6 5 4 33 33 H 1.09001 * 109.47002 * 59.99738 * 11 9 7 34 34 H 1.08993 * 109.46955 * 180.02562 * 11 9 7 35 35 H 1.09000 * 109.47050 * 300.00004 * 11 9 7 36 36 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8647 -1.8894 1.1727 6 6 2.7597 -2.4959 2.5895 7 6 2.4037 -1.2536 3.4386 8 1 3.3042 -0.8045 3.8576 9 6 1.4258 -1.6295 4.5537 10 1 0.5406 -2.0940 4.1193 11 6 1.0169 -0.3696 5.3195 12 6 2.0894 -2.5982 5.4983 13 1 3.1069 -2.9140 5.3213 14 6 1.3977 -3.0807 6.5891 15 7 0.1589 -2.6959 6.8049 16 14 2.2199 -4.2822 7.7596 17 1 3.6048 -4.5541 7.2976 18 1 2.2597 -3.6958 9.1234 19 1 1.4492 -5.5511 7.7886 20 6 1.7484 -0.3081 2.4561 21 8 1.0768 0.6546 2.7610 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 2.4952 -2.5976 0.4309 30 1 3.8972 -1.6179 0.9526 31 1 3.7126 -2.9225 2.9028 32 1 1.9659 -3.2413 2.6370 33 1 0.5370 0.3312 4.6363 34 1 0.3206 -0.6374 6.1141 35 1 1.9021 0.0950 5.7539 36 1 -0.3279 -3.0357 7.5722 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = -66.442316 kcal Electronic energy + Delta-G solvation = -16408.748878 eV Core-core repulsion = 13891.609995 eV Total energy + Delta-G solvation = -2517.138883 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53019 -37.31394 -37.08186 -35.05589 -32.76750 -29.93794 -28.09191 -27.83994 -27.16834 -23.65435 -22.70821 -21.62484 -19.56715 -18.48795 -17.53471 -17.03589 -16.43149 -15.96388 -15.33445 -14.72137 -14.57332 -14.51148 -14.21236 -13.96325 -13.62647 -13.50157 -12.96948 -12.92421 -12.71951 -12.63315 -12.52047 -12.21548 -12.07988 -12.03535 -11.94058 -11.52312 -11.22358 -10.96035 -10.45123 -10.00928 -9.52827 -8.03573 -6.19318 1.43994 1.45561 1.56985 1.77118 2.19447 2.47395 3.23564 3.64375 3.85531 4.08132 4.12647 4.18640 4.30073 4.39310 4.67629 4.69057 4.73841 4.81929 4.91144 4.92239 4.97084 5.03160 5.24083 5.27679 5.31784 5.35685 5.41988 5.46698 5.63939 5.90049 5.91990 6.11068 6.31124 6.37492 6.92401 7.42225 7.49477 9.01525 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.046028 B = 0.007461 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.185309 B = 3751.944127 C = 4037.092692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 C -0.161 4.161 4 N -0.620 5.620 5 C 0.107 3.893 6 C -0.110 4.110 7 C -0.114 4.114 8 H 0.091 0.909 9 C 0.068 3.932 10 H -0.013 1.013 11 C -0.138 4.138 12 C -0.518 4.518 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.925 5.925 16 Si 0.959 3.041 17 H -0.257 1.257 18 H -0.287 1.287 19 H -0.283 1.283 20 C 0.514 3.486 21 O -0.564 6.564 22 H 0.032 0.968 23 H 0.091 0.909 24 H 0.052 0.948 25 H 0.123 0.877 26 H 0.089 0.911 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.017 0.983 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 0.943 -15.308 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 C -0.219 4.219 4 N -0.355 5.355 5 C -0.015 4.015 6 C -0.148 4.148 7 C -0.136 4.136 8 H 0.109 0.891 9 C 0.049 3.951 10 H 0.005 0.995 11 C -0.195 4.195 12 C -0.556 4.556 13 H 0.086 0.914 14 C -0.193 4.193 15 N -0.565 5.565 16 Si 0.785 3.215 17 H -0.181 1.181 18 H -0.214 1.214 19 H -0.209 1.209 20 C 0.303 3.697 21 O -0.444 6.444 22 H 0.051 0.949 23 H 0.110 0.890 24 H 0.071 0.929 25 H 0.140 0.860 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.120 1.448 -15.137 16.391 hybrid contribution -0.203 -0.395 1.265 1.341 sum 5.917 1.053 -13.871 15.117 Atomic orbital electron populations 1.22153 0.95728 1.01926 1.02432 1.21162 0.93900 0.93483 0.87003 1.22122 1.01375 0.95864 1.02507 1.48662 1.51303 1.30065 1.05423 1.22322 0.95448 0.85780 0.97965 1.22494 1.03464 0.95942 0.92918 1.22024 0.99832 0.96073 0.95624 0.89080 1.18371 0.92313 0.92962 0.91457 0.99507 1.21823 0.99372 0.97881 1.00459 1.21537 0.99775 1.25210 1.09073 0.91350 1.25858 0.95374 0.98466 0.99633 1.70100 1.11545 1.45327 1.29558 0.85489 0.79175 0.78462 0.78416 1.18083 1.21370 1.20866 1.21328 0.79108 0.84418 0.84874 1.90531 1.41191 1.30729 1.81937 0.94869 0.89035 0.92884 0.85963 0.89244 0.94626 0.91995 0.88252 0.88900 0.88129 0.91607 0.94313 0.93464 0.96414 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 9.20 71.98 0.66 -3.61 16 2 C 0.15 3.46 3.47 44.99 0.16 3.62 16 3 C -0.16 -3.76 9.20 71.98 0.66 -3.10 16 4 N -0.62 -18.55 2.83 -794.03 -2.25 -20.80 16 5 C 0.11 2.47 7.30 86.83 0.63 3.11 16 6 C -0.11 -3.48 6.06 31.65 0.19 -3.29 16 7 C -0.11 -4.72 2.45 -10.80 -0.03 -4.75 16 8 H 0.09 3.73 8.14 -2.38 -0.02 3.71 16 9 C 0.07 3.57 1.77 -11.54 -0.02 3.55 16 10 H -0.01 -0.78 8.12 -2.39 -0.02 -0.80 16 11 C -0.14 -7.64 8.66 71.98 0.62 -7.02 16 12 C -0.52 -28.08 8.08 25.60 0.21 -27.88 16 13 H 0.07 3.47 7.60 -2.91 -0.02 3.44 16 14 C 0.00 0.24 5.30 84.66 0.45 0.69 16 15 N -0.93 -55.75 11.32 21.45 0.24 -55.50 16 16 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 C 0.51 20.82 6.81 87.90 0.60 21.42 16 21 O -0.56 -26.90 12.23 -3.04 -0.04 -26.94 16 22 H 0.03 1.13 6.80 -2.39 -0.02 1.11 16 23 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.12 1.95 8.07 -2.39 -0.02 1.93 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 1.11 6.77 -2.39 -0.02 1.09 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.07 2.31 7.90 -2.39 -0.02 2.29 16 33 H 0.04 2.13 5.43 -2.39 -0.01 2.12 16 34 H 0.05 2.85 6.07 -2.39 -0.01 2.84 16 35 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -69.84 283.89 5.16 -64.68 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.04 Total: 10.27 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 4.14 Total: -17.25 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -2.00 Total: -76.30 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.04 Total: -26.94 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.84 5.16 -64.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.762 kcal (2) G-P(sol) polarization free energy of solvation -69.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds