Wall clock time and date at job start Mon Mar 30 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46706 * 2 1 4 4 N 1.46502 * 109.46944 * 119.99542 * 2 1 3 5 5 C 1.46764 * 124.34707 * 120.00455 * 4 2 1 6 6 C 1.54480 * 105.47241 * 197.03818 * 5 4 2 7 7 C 1.54784 * 101.69261 * 334.38904 * 6 5 4 8 8 H 1.09001 * 110.42713 * 143.71017 * 7 6 5 9 9 C 1.53003 * 110.61655 * 266.40173 * 7 6 5 10 10 H 1.09002 * 109.46745 * 56.21195 * 9 7 6 11 11 C 1.53002 * 109.47057 * 176.21498 * 9 7 6 12 12 C 1.50703 * 109.46759 * 296.21496 * 9 7 6 13 13 H 1.07991 * 120.00321 * 359.97438 * 12 9 7 14 14 C 1.37883 * 119.99503 * 180.02562 * 12 9 7 15 15 N 1.31517 * 120.00229 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99667 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47372 * 89.99939 * 16 14 12 18 18 H 1.48507 * 109.46597 * 209.99520 * 16 14 12 19 19 H 1.48494 * 109.47333 * 329.99388 * 16 14 12 20 20 C 1.34420 * 124.35242 * 300.02756 * 4 2 1 21 21 O 1.21283 * 124.93917 * 359.53285 * 20 4 2 22 22 H 1.08999 * 109.47412 * 300.00418 * 1 2 3 23 23 H 1.08997 * 109.46841 * 60.00245 * 1 2 3 24 24 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47246 * 239.99889 * 2 1 3 26 26 H 1.08997 * 109.47270 * 299.99492 * 3 2 1 27 27 H 1.08997 * 109.47158 * 60.00332 * 3 2 1 28 28 H 1.09002 * 109.46737 * 179.97438 * 3 2 1 29 29 H 1.09003 * 110.24343 * 316.03631 * 5 4 2 30 30 H 1.09004 * 110.24843 * 77.94733 * 5 4 2 31 31 H 1.08997 * 110.97191 * 92.70203 * 6 5 4 32 32 H 1.09008 * 110.96860 * 216.42712 * 6 5 4 33 33 H 1.08997 * 109.46869 * 300.00053 * 11 9 7 34 34 H 1.08998 * 109.46845 * 59.99704 * 11 9 7 35 35 H 1.08996 * 109.46688 * 179.97438 * 11 9 7 36 36 H 0.96991 * 119.99774 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8887 1.1729 6 6 2.7604 -2.4955 2.5896 7 6 2.4077 -1.2504 3.4388 8 1 1.7141 -1.5176 4.2360 9 6 3.6742 -0.6176 4.0189 10 1 4.3633 -0.3764 3.2095 11 6 3.3057 0.6615 4.7733 12 6 4.3319 -1.5878 4.9662 13 1 3.8905 -2.5584 5.1376 14 6 5.4966 -1.2358 5.6147 15 7 6.0339 -0.0536 5.4063 16 14 6.3122 -2.4387 6.7883 17 1 7.2773 -3.2834 6.0398 18 1 7.0310 -1.6862 7.8478 19 1 5.2769 -3.3025 7.4104 20 6 1.7475 -0.3085 2.4563 21 8 1.0760 0.6544 2.7610 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 0.0005 29 1 2.4969 -2.5969 0.4308 30 1 3.8980 -1.6164 0.9534 31 1 1.9671 -3.2415 2.6365 32 1 3.7133 -2.9221 2.9030 33 1 2.8300 1.3631 4.0882 34 1 2.6166 0.4201 5.5826 35 1 4.2079 1.1119 5.1870 36 1 6.8534 0.1938 5.8623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260460058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:37 Heat of formation + Delta-G solvation = -51.359267 kcal Electronic energy + Delta-G solvation = -16483.294734 eV Core-core repulsion = 13966.809901 eV Total energy + Delta-G solvation = -2516.484833 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.08953 -35.78477 -35.52718 -33.33161 -30.86248 -28.55186 -27.00895 -26.28012 -25.08802 -22.17048 -21.45409 -19.96634 -18.07745 -16.40469 -16.06087 -15.40353 -14.89704 -14.45772 -13.73984 -13.48035 -13.21048 -13.09060 -12.49237 -12.29258 -12.19572 -11.86073 -11.80001 -11.39400 -11.07993 -11.04163 -10.92195 -10.81481 -10.60482 -10.47642 -10.06510 -9.74877 -9.44679 -9.00907 -8.48641 -8.33732 -8.18036 -5.97783 -4.05356 3.29819 3.33621 3.37685 3.41123 3.46762 4.43186 4.89316 5.16576 5.23028 5.32206 5.34055 5.41691 5.49351 5.71520 5.75232 5.81603 5.95994 6.01217 6.04620 6.24774 6.37347 6.48975 6.55460 6.69002 6.84614 7.09529 7.12027 7.35766 7.40797 7.68865 7.75152 7.97869 8.18037 8.42856 8.89826 8.98293 9.59142 11.07733 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044526 B = 0.007690 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.688257 B = 3640.429531 C = 3843.821719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.167 4.167 4 N -0.625 5.625 5 C 0.107 3.893 6 C -0.126 4.126 7 C -0.109 4.109 8 H 0.088 0.912 9 C 0.067 3.933 10 H 0.026 0.974 11 C -0.140 4.140 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.888 5.888 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.527 3.473 21 O -0.538 6.538 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.018 0.982 34 H 0.025 0.975 35 H 0.079 0.921 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 -3.051 -10.380 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 C -0.225 4.225 4 N -0.360 5.360 5 C -0.016 4.016 6 C -0.163 4.163 7 C -0.131 4.131 8 H 0.107 0.893 9 C 0.048 3.952 10 H 0.044 0.956 11 C -0.198 4.198 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.526 5.526 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.316 3.684 21 O -0.415 6.415 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.332 -2.391 -10.233 12.268 hybrid contribution 0.573 -0.654 0.574 1.041 sum -5.759 -3.044 -9.659 11.650 Atomic orbital electron populations 1.22165 0.95320 1.01925 1.02903 1.20803 0.93995 0.93144 0.87027 1.22176 1.01454 0.96081 1.02826 1.48493 1.51791 1.29786 1.05936 1.22053 0.94621 0.86061 0.98818 1.22668 1.03783 0.97135 0.92736 1.22232 1.00985 0.93940 0.95918 0.89334 1.18497 0.88264 0.93415 0.95035 0.95551 1.21813 1.00964 0.98164 0.98811 1.21114 1.07854 1.00626 1.25396 0.92358 1.24961 0.97117 0.95161 0.96716 1.69909 1.20060 1.19572 1.43090 0.86615 0.79533 0.81099 0.80862 1.20749 1.21313 1.19910 1.21324 0.78476 0.85040 0.83513 1.90583 1.40220 1.29024 1.81645 0.90971 0.92061 0.92842 0.90223 0.92172 0.90844 0.92460 0.91732 0.91415 0.91800 0.87869 0.96310 0.95629 0.90188 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.20 37.16 0.34 -1.82 16 2 C 0.15 2.15 3.48 -67.93 -0.24 1.91 16 3 C -0.17 -2.42 9.20 37.16 0.34 -2.07 16 4 N -0.62 -10.51 2.83 -164.84 -0.47 -10.98 16 5 C 0.11 1.61 7.30 -3.12 -0.02 1.58 16 6 C -0.13 -2.11 6.48 -25.01 -0.16 -2.27 16 7 C -0.11 -2.28 2.45 -90.55 -0.22 -2.50 16 8 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 9 C 0.07 1.66 1.88 -91.77 -0.17 1.48 16 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.14 -3.63 8.66 37.16 0.32 -3.31 16 12 C -0.51 -13.48 7.54 -34.44 -0.26 -13.74 16 13 H 0.06 1.48 7.48 -52.49 -0.39 1.09 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.29 11.32 55.43 0.63 -24.67 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.53 10.80 6.18 -10.86 -0.07 10.74 16 21 O -0.54 -12.37 13.73 5.55 0.08 -12.30 16 22 H 0.07 1.15 6.80 -51.93 -0.35 0.79 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.28 6.77 -51.93 -0.35 0.93 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.84 6.96 -51.92 -0.36 1.48 16 33 H 0.02 0.46 6.43 -51.93 -0.33 0.13 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 284.71 15.07 4.29 4.29 Total: -1.00 -29.83 284.71 -6.61 -36.44 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.89 Total: -0.17 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.23 Total: -8.43 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.16 Total: -35.65 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.83 -6.61 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.917 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds