Wall clock time and date at job start Mon Mar 30 2020 03:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46706 * 2 1 4 4 N 1.46502 * 109.46944 * 119.99542 * 2 1 3 5 5 C 1.46764 * 124.34707 * 120.00455 * 4 2 1 6 6 C 1.54480 * 105.47241 * 197.03818 * 5 4 2 7 7 C 1.54784 * 101.69261 * 334.38904 * 6 5 4 8 8 H 1.09001 * 110.42713 * 143.71017 * 7 6 5 9 9 C 1.53003 * 110.61655 * 266.40173 * 7 6 5 10 10 H 1.09002 * 109.46745 * 56.21195 * 9 7 6 11 11 C 1.53002 * 109.47057 * 176.21498 * 9 7 6 12 12 C 1.50703 * 109.46759 * 296.21496 * 9 7 6 13 13 H 1.07991 * 120.00321 * 359.97438 * 12 9 7 14 14 C 1.37883 * 119.99503 * 180.02562 * 12 9 7 15 15 N 1.31517 * 120.00229 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99667 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47372 * 89.99939 * 16 14 12 18 18 H 1.48507 * 109.46597 * 209.99520 * 16 14 12 19 19 H 1.48494 * 109.47333 * 329.99388 * 16 14 12 20 20 C 1.34420 * 124.35242 * 300.02756 * 4 2 1 21 21 O 1.21283 * 124.93917 * 359.53285 * 20 4 2 22 22 H 1.08999 * 109.47412 * 300.00418 * 1 2 3 23 23 H 1.08997 * 109.46841 * 60.00245 * 1 2 3 24 24 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47246 * 239.99889 * 2 1 3 26 26 H 1.08997 * 109.47270 * 299.99492 * 3 2 1 27 27 H 1.08997 * 109.47158 * 60.00332 * 3 2 1 28 28 H 1.09002 * 109.46737 * 179.97438 * 3 2 1 29 29 H 1.09003 * 110.24343 * 316.03631 * 5 4 2 30 30 H 1.09004 * 110.24843 * 77.94733 * 5 4 2 31 31 H 1.08997 * 110.97191 * 92.70203 * 6 5 4 32 32 H 1.09008 * 110.96860 * 216.42712 * 6 5 4 33 33 H 1.08997 * 109.46869 * 300.00053 * 11 9 7 34 34 H 1.08998 * 109.46845 * 59.99704 * 11 9 7 35 35 H 1.08996 * 109.46688 * 179.97438 * 11 9 7 36 36 H 0.96991 * 119.99774 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8887 1.1729 6 6 2.7604 -2.4955 2.5896 7 6 2.4077 -1.2504 3.4388 8 1 1.7141 -1.5176 4.2360 9 6 3.6742 -0.6176 4.0189 10 1 4.3633 -0.3764 3.2095 11 6 3.3057 0.6615 4.7733 12 6 4.3319 -1.5878 4.9662 13 1 3.8905 -2.5584 5.1376 14 6 5.4966 -1.2358 5.6147 15 7 6.0339 -0.0536 5.4063 16 14 6.3122 -2.4387 6.7883 17 1 7.2773 -3.2834 6.0398 18 1 7.0310 -1.6862 7.8478 19 1 5.2769 -3.3025 7.4104 20 6 1.7475 -0.3085 2.4563 21 8 1.0760 0.6544 2.7610 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 0.0005 29 1 2.4969 -2.5969 0.4308 30 1 3.8980 -1.6164 0.9534 31 1 1.9671 -3.2415 2.6365 32 1 3.7133 -2.9221 2.9030 33 1 2.8300 1.3631 4.0882 34 1 2.6166 0.4201 5.5826 35 1 4.2079 1.1119 5.1870 36 1 6.8534 0.1938 5.8623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:36 Heat of formation + Delta-G solvation = -69.009648 kcal Electronic energy + Delta-G solvation = -16484.060112 eV Core-core repulsion = 13966.809901 eV Total energy + Delta-G solvation = -2517.250211 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.57009 -37.37264 -37.06613 -35.01642 -32.70017 -30.05020 -28.09898 -27.85009 -27.18999 -23.61509 -22.92897 -21.69067 -19.56339 -18.32259 -17.49929 -17.02856 -16.30126 -16.21255 -15.28879 -14.84610 -14.68149 -14.44438 -14.12776 -14.06935 -13.64596 -13.42907 -12.96718 -12.87484 -12.76216 -12.67847 -12.47561 -12.26400 -12.19197 -12.11170 -11.93494 -11.55164 -11.24921 -10.93874 -10.44051 -10.19410 -9.54523 -8.05536 -6.19918 1.45483 1.47400 1.56802 1.75687 2.18509 2.47482 3.22676 3.63309 3.81240 4.06638 4.12845 4.20477 4.29295 4.38320 4.66335 4.71358 4.73356 4.78623 4.84921 4.90153 4.92423 5.04782 5.13685 5.19996 5.27462 5.33113 5.37814 5.44846 5.61803 5.85068 5.91002 6.04004 6.28120 6.35247 6.90114 7.38093 7.48427 8.99890 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044526 B = 0.007690 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.688257 B = 3640.429531 C = 3843.821719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 C -0.165 4.165 4 N -0.617 5.617 5 C 0.107 3.893 6 C -0.117 4.117 7 C -0.115 4.115 8 H 0.078 0.922 9 C 0.071 3.929 10 H 0.000 1.000 11 C -0.128 4.128 12 C -0.519 4.519 13 H 0.067 0.933 14 C 0.009 3.991 15 N -0.923 5.923 16 Si 0.958 3.042 17 H -0.271 1.271 18 H -0.291 1.291 19 H -0.266 1.266 20 C 0.518 3.482 21 O -0.573 6.573 22 H 0.036 0.964 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.120 0.880 26 H 0.093 0.907 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.014 0.986 34 H 0.020 0.980 35 H 0.055 0.945 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 -5.165 -12.118 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 C -0.223 4.223 4 N -0.351 5.351 5 C -0.015 4.015 6 C -0.155 4.155 7 C -0.137 4.137 8 H 0.097 0.903 9 C 0.052 3.948 10 H 0.018 0.982 11 C -0.186 4.186 12 C -0.557 4.557 13 H 0.085 0.915 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.783 3.217 17 H -0.197 1.197 18 H -0.218 1.218 19 H -0.190 1.190 20 C 0.308 3.692 21 O -0.453 6.453 22 H 0.055 0.945 23 H 0.109 0.891 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.111 0.889 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.690 -4.535 -12.009 14.475 hybrid contribution 0.671 0.055 1.075 1.269 sum -6.018 -4.480 -10.933 13.260 Atomic orbital electron populations 1.22106 0.94442 1.02492 1.02578 1.21182 0.94760 0.92815 0.86971 1.22154 1.00784 0.96758 1.02556 1.48607 1.50855 1.30052 1.05581 1.22231 0.94533 0.85989 0.98741 1.22630 1.04127 0.95828 0.92908 1.22105 0.98814 0.96046 0.96705 0.90348 1.18329 0.89675 0.92786 0.93965 0.98212 1.21677 0.99401 0.98936 0.98578 1.21443 1.07879 1.01084 1.25297 0.91451 1.25793 0.97911 0.96732 0.98437 1.70057 1.20479 1.21441 1.44260 0.85560 0.78640 0.78915 0.78562 1.19692 1.21752 1.18989 1.21262 0.78453 0.84587 0.84931 1.90560 1.41936 1.30344 1.82492 0.94507 0.89147 0.91794 0.86183 0.88865 0.94660 0.93397 0.87025 0.91753 0.88852 0.88965 0.96747 0.96107 0.92630 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.20 71.98 0.66 -3.07 16 2 C 0.14 3.63 3.48 44.99 0.16 3.79 16 3 C -0.16 -4.55 9.20 71.98 0.66 -3.89 16 4 N -0.62 -19.63 2.83 -794.03 -2.25 -21.88 16 5 C 0.11 2.86 7.30 86.83 0.63 3.50 16 6 C -0.12 -3.70 6.48 31.71 0.21 -3.49 16 7 C -0.12 -4.81 2.45 -10.75 -0.03 -4.83 16 8 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 9 C 0.07 3.63 1.88 -11.54 -0.02 3.61 16 10 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 11 C -0.13 -6.95 8.66 71.98 0.62 -6.32 16 12 C -0.52 -27.47 7.54 25.60 0.19 -27.28 16 13 H 0.07 3.37 7.48 -2.92 -0.02 3.35 16 14 C 0.01 0.51 5.30 84.66 0.45 0.96 16 15 N -0.92 -53.76 11.32 21.45 0.24 -53.51 16 16 Si 0.96 42.63 29.54 68.60 2.03 44.66 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 C 0.52 21.32 6.18 87.90 0.54 21.87 16 21 O -0.57 -27.20 13.73 -3.04 -0.04 -27.25 16 22 H 0.04 1.14 6.80 -2.39 -0.02 1.12 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.12 2.15 8.07 -2.39 -0.02 2.13 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.03 1.24 6.77 -2.39 -0.02 1.22 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.09 3.14 6.96 -2.38 -0.02 3.12 16 33 H 0.01 0.74 6.43 -2.39 -0.02 0.72 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 3.26 6.07 -2.39 -0.01 3.24 16 36 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -66.87 284.71 5.10 -61.77 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.04 Total: 11.38 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.08 Total: -15.17 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -2.01 Total: -75.40 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.04 Total: -27.25 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -66.87 5.10 -61.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.238 kcal (2) G-P(sol) polarization free energy of solvation -66.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds