Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47187 * 2 1 4 4 N 1.46494 * 109.47088 * 120.00171 * 2 1 3 5 5 C 1.46770 * 124.35131 * 119.99831 * 4 2 1 6 6 C 1.54484 * 105.47429 * 162.98271 * 5 4 2 7 7 C 1.54630 * 101.76344 * 25.41415 * 6 5 4 8 8 H 1.09002 * 110.48514 * 216.39269 * 7 6 5 9 9 C 1.53001 * 110.48562 * 93.88188 * 7 6 5 10 10 H 1.09003 * 109.46836 * 301.84348 * 9 7 6 11 11 C 1.53000 * 109.46989 * 61.83880 * 9 7 6 12 12 C 1.50694 * 109.47168 * 181.83890 * 9 7 6 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 9 7 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.34740 * 124.29999 * 299.95842 * 4 2 1 21 21 O 1.21280 * 125.12478 * 0.42437 * 20 4 2 22 22 H 1.09000 * 109.47330 * 300.00117 * 1 2 3 23 23 H 1.08998 * 109.47185 * 60.00088 * 1 2 3 24 24 H 1.09007 * 109.47260 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46938 * 240.00154 * 2 1 3 26 26 H 1.08996 * 109.47361 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47657 * 300.00060 * 3 2 1 28 28 H 1.08996 * 109.47553 * 59.99863 * 3 2 1 29 29 H 1.09004 * 110.24259 * 43.98009 * 5 4 2 30 30 H 1.08997 * 110.31662 * 282.01829 * 5 4 2 31 31 H 1.09004 * 110.96789 * 267.30315 * 6 5 4 32 32 H 1.08989 * 111.00077 * 143.54763 * 6 5 4 33 33 H 1.09007 * 109.47356 * 300.00069 * 11 9 7 34 34 H 1.09000 * 109.47156 * 59.99794 * 11 9 7 35 35 H 1.08997 * 109.47359 * 180.02562 * 11 9 7 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8656 -1.8889 1.1727 6 6 3.4724 -1.9924 2.5896 7 6 2.4204 -1.2417 3.4386 8 1 2.9054 -0.6762 4.2344 9 6 1.4047 -2.2246 4.0244 10 1 0.9209 -2.7722 3.2156 11 6 2.1230 -3.2097 4.9489 12 6 0.3660 -1.4655 4.8090 13 1 0.4240 -0.3896 4.8823 14 6 -0.6587 -2.1446 5.4335 15 7 -0.7298 -3.4548 5.3440 16 14 -1.9460 -1.2037 6.4067 17 1 -2.9319 -2.1578 6.9752 18 1 -1.2862 -0.4578 7.5083 19 1 -2.6435 -0.2476 5.5098 20 6 1.7474 -0.3061 2.4587 21 8 1.0647 0.6480 2.7663 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.6564 -1.7772 0.4308 30 1 2.2657 -2.7722 0.9538 31 1 4.4402 -1.4930 2.6369 32 1 3.5566 -3.0327 2.9034 33 1 2.8744 -3.7588 4.3813 34 1 2.6070 -2.6622 5.7576 35 1 1.3995 -3.9102 5.3659 36 1 -1.4505 -3.9326 5.7836 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260460062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -48.284147 kcal Electronic energy + Delta-G solvation = -16579.376494 eV Core-core repulsion = 14063.025008 eV Total energy + Delta-G solvation = -2516.351486 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.97391 -35.69752 -35.51005 -33.27509 -30.87573 -28.30211 -26.91864 -26.49447 -25.02538 -22.02318 -21.86299 -19.46410 -18.09333 -16.43890 -16.06822 -15.26232 -14.85003 -14.36739 -13.73869 -13.45268 -13.20796 -12.93520 -12.54465 -12.37990 -12.21420 -11.77972 -11.55537 -11.49287 -10.99323 -10.93661 -10.91628 -10.67861 -10.54746 -10.46059 -10.19275 -9.95118 -9.30303 -8.91777 -8.40475 -8.23750 -8.10989 -5.89644 -3.92891 3.42300 3.44397 3.50093 3.52083 3.55308 4.55079 4.95150 5.09756 5.26850 5.38680 5.42603 5.43190 5.44627 5.74449 5.78051 5.83842 6.00391 6.03436 6.13443 6.21185 6.36191 6.43903 6.57270 6.62590 6.67733 6.92156 7.13664 7.22339 7.29571 7.75942 7.83326 7.96508 8.20628 8.51549 9.05302 9.15363 9.71835 11.16922 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.009942 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.927974 B = 2815.738891 C = 3381.675308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.156 3.844 3 C -0.165 4.165 4 N -0.630 5.630 5 C 0.111 3.889 6 C -0.137 4.137 7 C -0.111 4.111 8 H 0.088 0.912 9 C 0.064 3.936 10 H 0.026 0.974 11 C -0.137 4.137 12 C -0.505 4.505 13 H 0.066 0.934 14 C 0.059 3.941 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.290 1.290 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.539 3.461 21 O -0.522 6.522 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.011 0.989 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 2.387 -10.090 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.053 3.947 3 C -0.223 4.223 4 N -0.367 5.367 5 C -0.012 4.012 6 C -0.174 4.174 7 C -0.132 4.132 8 H 0.107 0.893 9 C 0.045 3.955 10 H 0.044 0.956 11 C -0.194 4.194 12 C -0.544 4.544 13 H 0.084 0.916 14 C -0.141 4.141 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.216 1.216 18 H -0.203 1.203 19 H -0.203 1.203 20 C 0.328 3.672 21 O -0.397 6.397 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.030 0.970 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.109 2.798 -9.925 12.525 hybrid contribution -0.749 0.344 0.437 0.933 sum 6.360 3.143 -9.488 11.847 Atomic orbital electron populations 1.22179 0.95042 1.02507 1.02845 1.20763 0.94403 0.92658 0.86901 1.22167 1.00765 0.96461 1.02921 1.48536 1.52815 1.29332 1.06030 1.21938 0.93256 0.87803 0.98242 1.22770 0.97988 1.02761 0.93920 1.22193 0.97180 0.97672 0.96193 0.89339 1.18495 0.90991 0.91292 0.94691 0.95555 1.21859 0.98661 1.00177 0.98724 1.21285 1.08468 0.93986 1.30619 0.91609 1.24918 0.97742 0.94791 0.96601 1.69878 1.32626 1.06381 1.44831 0.86665 0.81428 0.79618 0.80372 1.21557 1.20321 1.20309 1.20985 0.79313 0.84033 0.82863 1.90590 1.38580 1.29413 1.81109 0.90622 0.92350 0.92473 0.90423 0.92940 0.92125 0.90932 0.91766 0.91717 0.91452 0.89036 0.96988 0.95399 0.89655 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.20 37.16 0.34 -2.30 16 2 C 0.16 2.29 3.48 -67.94 -0.24 2.06 16 3 C -0.17 -2.27 9.20 37.15 0.34 -1.93 16 4 N -0.63 -10.95 2.84 -164.75 -0.47 -11.42 16 5 C 0.11 1.61 7.30 -3.12 -0.02 1.59 16 6 C -0.14 -2.13 6.53 -25.10 -0.16 -2.30 16 7 C -0.11 -2.30 2.45 -90.63 -0.22 -2.52 16 8 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 9 C 0.06 1.58 1.88 -91.77 -0.17 1.41 16 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.14 -3.17 8.75 37.16 0.33 -2.85 16 12 C -0.51 -14.40 7.96 -34.44 -0.27 -14.67 16 13 H 0.07 1.96 6.78 -52.49 -0.36 1.61 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.90 -26.11 11.32 55.43 0.63 -25.49 16 16 Si 0.89 22.64 29.54 -169.99 -5.02 17.62 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 20 C 0.54 11.61 6.35 -10.72 -0.07 11.54 16 21 O -0.52 -13.01 14.01 5.56 0.08 -12.93 16 22 H 0.07 1.46 6.79 -51.93 -0.35 1.10 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 25 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.22 6.80 -51.93 -0.35 0.86 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.39 5.96 -51.94 -0.31 1.08 16 33 H 0.01 0.23 6.23 -51.93 -0.32 -0.10 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 283.86 15.07 4.28 4.28 Total: -1.00 -31.42 283.86 -6.54 -37.96 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.79 Total: -1.68 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.25 Total: -8.34 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.16 Total: -36.91 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.42 -6.54 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.324 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds