Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47187 * 2 1 4 4 N 1.46494 * 109.47088 * 120.00171 * 2 1 3 5 5 C 1.46770 * 124.35131 * 119.99831 * 4 2 1 6 6 C 1.54484 * 105.47429 * 162.98271 * 5 4 2 7 7 C 1.54630 * 101.76344 * 25.41415 * 6 5 4 8 8 H 1.09002 * 110.48514 * 216.39269 * 7 6 5 9 9 C 1.53001 * 110.48562 * 93.88188 * 7 6 5 10 10 H 1.09003 * 109.46836 * 301.84348 * 9 7 6 11 11 C 1.53000 * 109.46989 * 61.83880 * 9 7 6 12 12 C 1.50694 * 109.47168 * 181.83890 * 9 7 6 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 9 7 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.34740 * 124.29999 * 299.95842 * 4 2 1 21 21 O 1.21280 * 125.12478 * 0.42437 * 20 4 2 22 22 H 1.09000 * 109.47330 * 300.00117 * 1 2 3 23 23 H 1.08998 * 109.47185 * 60.00088 * 1 2 3 24 24 H 1.09007 * 109.47260 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46938 * 240.00154 * 2 1 3 26 26 H 1.08996 * 109.47361 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47657 * 300.00060 * 3 2 1 28 28 H 1.08996 * 109.47553 * 59.99863 * 3 2 1 29 29 H 1.09004 * 110.24259 * 43.98009 * 5 4 2 30 30 H 1.08997 * 110.31662 * 282.01829 * 5 4 2 31 31 H 1.09004 * 110.96789 * 267.30315 * 6 5 4 32 32 H 1.08989 * 111.00077 * 143.54763 * 6 5 4 33 33 H 1.09007 * 109.47356 * 300.00069 * 11 9 7 34 34 H 1.09000 * 109.47156 * 59.99794 * 11 9 7 35 35 H 1.08997 * 109.47359 * 180.02562 * 11 9 7 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8656 -1.8889 1.1727 6 6 3.4724 -1.9924 2.5896 7 6 2.4204 -1.2417 3.4386 8 1 2.9054 -0.6762 4.2344 9 6 1.4047 -2.2246 4.0244 10 1 0.9209 -2.7722 3.2156 11 6 2.1230 -3.2097 4.9489 12 6 0.3660 -1.4655 4.8090 13 1 0.4240 -0.3896 4.8823 14 6 -0.6587 -2.1446 5.4335 15 7 -0.7298 -3.4548 5.3440 16 14 -1.9460 -1.2037 6.4067 17 1 -2.9319 -2.1578 6.9752 18 1 -1.2862 -0.4578 7.5083 19 1 -2.6435 -0.2476 5.5098 20 6 1.7474 -0.3061 2.4587 21 8 1.0647 0.6480 2.7663 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.6564 -1.7772 0.4308 30 1 2.2657 -2.7722 0.9538 31 1 4.4402 -1.4930 2.6369 32 1 3.5566 -3.0327 2.9034 33 1 2.8744 -3.7588 4.3813 34 1 2.6070 -2.6622 5.7576 35 1 1.3995 -3.9102 5.3659 36 1 -1.4505 -3.9326 5.7836 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -67.945623 kcal Electronic energy + Delta-G solvation = -16580.229079 eV Core-core repulsion = 14063.025008 eV Total energy + Delta-G solvation = -2517.204071 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46582 -37.37017 -37.02676 -35.03303 -32.71456 -29.77075 -28.09872 -28.07685 -27.09149 -23.60735 -23.18086 -21.16722 -19.60253 -18.43978 -17.50219 -16.99651 -16.28275 -16.22320 -15.24889 -14.96099 -14.61234 -14.50543 -14.14393 -13.94249 -13.73124 -13.27500 -12.97362 -12.93770 -12.80161 -12.64925 -12.39551 -12.25947 -12.20395 -12.09692 -11.87324 -11.81664 -11.12553 -10.89021 -10.44216 -10.11854 -9.48818 -8.09706 -6.18585 1.34405 1.36456 1.44929 1.87815 2.24374 2.42417 3.18274 3.66584 3.80288 4.07524 4.12958 4.20556 4.30546 4.41245 4.67548 4.71423 4.74723 4.80210 4.86733 4.90441 4.92486 5.05587 5.11602 5.17890 5.28913 5.33292 5.34724 5.44173 5.66144 5.91728 5.95601 6.13746 6.35312 6.44556 6.90754 7.46840 7.51245 8.94532 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.009942 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.927974 B = 2815.738891 C = 3381.675308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 C -0.158 4.158 4 N -0.624 5.624 5 C 0.106 3.894 6 C -0.124 4.124 7 C -0.117 4.117 8 H 0.077 0.923 9 C 0.067 3.933 10 H -0.001 1.001 11 C -0.126 4.126 12 C -0.523 4.523 13 H 0.041 0.959 14 C 0.016 3.984 15 N -0.914 5.914 16 Si 0.940 3.060 17 H -0.276 1.276 18 H -0.272 1.272 19 H -0.287 1.287 20 C 0.524 3.476 21 O -0.571 6.571 22 H 0.029 0.971 23 H 0.091 0.909 24 H 0.046 0.954 25 H 0.122 0.878 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.054 0.946 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.328 1.914 -11.976 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 C -0.216 4.216 4 N -0.359 5.359 5 C -0.016 4.016 6 C -0.161 4.161 7 C -0.138 4.138 8 H 0.095 0.905 9 C 0.048 3.952 10 H 0.017 0.983 11 C -0.184 4.184 12 C -0.561 4.561 13 H 0.060 0.940 14 C -0.182 4.182 15 N -0.555 5.555 16 Si 0.766 3.234 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.213 1.213 20 C 0.314 3.686 21 O -0.450 6.450 22 H 0.048 0.952 23 H 0.110 0.890 24 H 0.065 0.935 25 H 0.140 0.860 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.837 2.295 -11.839 14.951 hybrid contribution -1.290 0.502 0.968 1.689 sum 7.547 2.797 -10.871 13.527 Atomic orbital electron populations 1.22154 0.96340 1.01569 1.02233 1.21121 0.93507 0.93672 0.87185 1.22102 1.01531 0.95596 1.02368 1.48676 1.52109 1.29708 1.05426 1.22227 0.94005 0.86532 0.98803 1.22768 0.97594 1.02613 0.93134 1.22080 0.97683 0.97271 0.96807 0.90499 1.18349 0.91294 0.91851 0.93689 0.98257 1.21684 0.98618 0.99343 0.98733 1.21538 1.10088 0.93174 1.31299 0.94028 1.25545 0.99401 0.95669 0.97618 1.69970 1.33095 1.07045 1.45345 0.85901 0.79632 0.78643 0.79192 1.20106 1.19715 1.21279 1.21215 0.79087 0.83645 0.84672 1.90555 1.40712 1.31518 1.82244 0.95170 0.88981 0.93519 0.85980 0.91555 0.89251 0.94883 0.86947 0.91684 0.88358 0.88264 0.93065 0.95480 0.92706 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 9.20 71.98 0.66 -4.41 16 2 C 0.15 3.95 3.48 44.99 0.16 4.11 16 3 C -0.16 -4.01 9.20 71.98 0.66 -3.35 16 4 N -0.62 -20.58 2.84 -793.56 -2.25 -22.83 16 5 C 0.11 2.69 7.30 86.83 0.63 3.32 16 6 C -0.12 -3.46 6.53 31.65 0.21 -3.25 16 7 C -0.12 -4.82 2.45 -10.80 -0.03 -4.85 16 8 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 9 C 0.07 3.36 1.88 -11.54 -0.02 3.34 16 10 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 11 C -0.13 -5.81 8.75 71.98 0.63 -5.18 16 12 C -0.52 -30.83 7.96 25.60 0.20 -30.62 16 13 H 0.04 2.61 6.78 -2.91 -0.02 2.59 16 14 C 0.02 0.92 5.30 84.66 0.45 1.37 16 15 N -0.91 -54.11 11.32 21.45 0.24 -53.87 16 16 Si 0.94 47.47 29.54 68.60 2.03 49.50 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 19 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 20 C 0.52 22.89 6.35 87.85 0.56 23.44 16 21 O -0.57 -29.91 14.01 -3.03 -0.04 -29.96 16 22 H 0.03 1.19 6.79 -2.39 -0.02 1.17 16 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.12 2.29 8.07 -2.38 -0.02 2.27 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.03 1.10 6.80 -2.39 -0.02 1.09 16 29 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.10 2.64 5.96 -2.39 -0.01 2.62 16 33 H 0.05 1.91 6.23 -2.38 -0.01 1.90 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -72.42 283.86 5.13 -67.29 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.04 Total: 5.95 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 4.11 Total: -16.08 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -2.01 Total: -76.70 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.04 Total: -29.96 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -72.42 5.13 -67.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.651 kcal (2) G-P(sol) polarization free energy of solvation -72.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds