Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 119.99604 * 2 1 4 4 N 1.34771 * 119.99956 * 180.02562 * 2 1 3 5 5 C 1.47427 * 125.64920 * 354.90135 * 4 2 1 6 6 C 1.54917 * 104.82836 * 155.84321 * 5 4 2 7 7 C 1.55153 * 101.58221 * 37.00918 * 6 5 4 8 8 C 1.47026 * 125.64756 * 174.87259 * 4 2 1 9 9 H 1.09006 * 109.87670 * 300.65613 * 8 4 2 10 10 C 1.53001 * 109.88589 * 61.66834 * 8 4 2 11 11 H 1.08999 * 109.46762 * 298.54467 * 10 8 4 12 12 C 1.52997 * 109.46823 * 58.54039 * 10 8 4 13 13 C 1.52991 * 109.47196 * 178.54195 * 10 8 4 14 14 C 1.50697 * 109.47571 * 174.45970 * 13 10 8 15 15 H 1.08007 * 119.99416 * 359.97438 * 14 13 10 16 16 C 1.37872 * 120.00512 * 179.97438 * 14 13 10 17 17 N 1.31518 * 119.99882 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00108 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47060 * 59.99977 * 18 16 14 20 20 H 1.48501 * 109.46957 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47126 * 299.99961 * 18 16 14 22 22 H 1.09002 * 109.47296 * 239.99611 * 1 2 3 23 23 H 1.08998 * 109.47555 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47133 * 120.00133 * 1 2 3 25 25 H 1.08997 * 110.36901 * 274.67533 * 5 4 2 26 26 H 1.09000 * 110.36477 * 36.89708 * 5 4 2 27 27 H 1.09003 * 111.00380 * 155.08787 * 6 5 4 28 28 H 1.08999 * 110.99973 * 278.89925 * 6 5 4 29 29 H 1.08998 * 110.71998 * 206.13370 * 7 6 5 30 30 H 1.09001 * 110.72234 * 82.86399 * 7 6 5 31 31 H 1.08999 * 109.46794 * 186.36991 * 12 10 8 32 32 H 1.09000 * 109.47371 * 306.37381 * 12 10 8 33 33 H 1.09007 * 109.47288 * 66.37177 * 12 10 8 34 34 H 1.09000 * 109.47456 * 294.46038 * 13 10 8 35 35 H 1.09002 * 109.47660 * 54.45569 * 13 10 8 36 36 H 0.96998 * 119.99782 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5771 -2.5080 0.1053 6 6 2.6097 -3.4604 -0.5477 7 6 3.9503 -2.8258 -0.0925 8 6 3.6399 -1.3142 -0.1074 9 1 3.9898 -0.8707 -1.0396 10 6 4.3201 -0.6315 1.0809 11 1 4.0859 0.4330 1.0712 12 6 3.8143 -1.2532 2.3842 13 6 5.8348 -0.8214 0.9795 14 6 6.5139 -0.0363 2.0720 15 1 5.9239 0.5408 2.7688 16 6 7.8881 -0.0546 2.1821 17 7 8.6064 -0.7570 1.3334 18 14 8.7297 0.9192 3.5359 19 1 8.2573 0.4378 4.8589 20 1 10.1999 0.7348 3.4375 21 1 8.4010 2.3597 3.3872 22 1 -0.3634 -0.5139 0.8900 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 1.4244 -2.7737 1.1513 26 1 0.6317 -2.5420 -0.4360 27 1 2.5058 -4.4740 -0.1603 28 1 2.5199 -3.4484 -1.6339 29 1 4.7478 -3.0626 -0.7967 30 1 4.2116 -3.1559 0.9129 31 1 4.2111 -0.6939 3.2315 32 1 2.7250 -1.2190 2.4043 33 1 4.1465 -2.2896 2.4454 34 1 6.0766 -1.8787 1.0880 35 1 6.1813 -0.4673 0.0086 36 1 9.5732 -0.7702 1.4111 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260491454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = -52.855253 kcal Electronic energy + Delta-G solvation = -16281.325169 eV Core-core repulsion = 13764.775465 eV Total energy + Delta-G solvation = -2516.549704 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.01031 -37.35661 -34.47351 -32.14006 -31.50131 -29.36543 -27.71346 -26.75284 -23.93391 -22.70390 -21.44990 -19.48051 -17.96521 -16.64305 -16.29291 -16.06583 -14.88331 -14.43346 -14.39154 -13.87808 -13.27828 -12.90411 -12.72027 -12.47511 -12.33579 -12.00194 -11.94599 -11.46287 -11.22981 -11.04862 -10.88653 -10.83246 -10.49164 -10.29779 -10.19976 -9.73072 -9.39146 -9.10066 -8.91288 -8.26341 -8.18229 -5.92317 -3.92586 2.93145 3.31010 3.38774 3.42375 3.46318 4.53141 4.67438 4.72102 5.03748 5.12801 5.29073 5.38649 5.43446 5.47995 5.52965 5.70460 5.83625 5.86153 5.99370 6.10358 6.15113 6.28229 6.39992 6.55014 6.63825 6.74444 7.12752 7.20513 7.26209 7.75694 7.84902 7.95048 8.08234 8.48409 8.55220 9.13054 9.70314 11.19153 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.007364 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.985847 B = 3801.485329 C = 4236.691907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.519 3.481 3 O -0.538 6.538 4 N -0.613 5.613 5 C 0.101 3.899 6 C -0.135 4.135 7 C -0.127 4.127 8 C 0.140 3.860 9 H 0.068 0.932 10 C -0.097 4.097 11 H 0.072 0.928 12 C -0.124 4.124 13 C 0.033 3.967 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.027 0.973 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 -6.504 -3.208 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.307 3.693 3 O -0.415 6.415 4 N -0.348 5.348 5 C -0.022 4.022 6 C -0.173 4.173 7 C -0.165 4.165 8 C 0.038 3.962 9 H 0.086 0.914 10 C -0.116 4.116 11 H 0.091 0.909 12 C -0.181 4.181 13 C -0.005 4.005 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.101 0.899 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.152 -5.898 -3.256 16.582 hybrid contribution 0.540 0.439 0.732 1.010 sum -14.612 -5.459 -2.524 15.801 Atomic orbital electron populations 1.21893 0.92384 1.04908 1.03601 1.20348 0.89939 0.82481 0.76499 1.90747 1.70596 1.30631 1.49543 1.48675 1.08231 1.05369 1.72503 1.22290 0.96649 0.82739 1.00564 1.22785 0.95482 0.98445 1.00592 1.22770 0.96583 0.93750 1.03359 1.21813 0.78525 0.95853 0.99993 0.91367 1.21542 0.98402 0.99792 0.91862 0.90923 1.21663 0.97626 1.00226 0.98631 1.19094 0.87412 0.97023 0.96954 1.21214 0.91368 1.28641 1.13717 0.92784 1.24994 0.97607 0.95702 0.96151 1.69952 1.05771 1.41375 1.36703 0.86703 0.78275 0.80756 0.82542 1.20352 1.21364 1.20299 0.89896 0.89336 0.89928 0.91512 0.91206 0.90238 0.91039 0.90159 0.89511 0.92591 0.95389 0.93547 0.96359 0.96850 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.25 36.01 0.33 -1.44 16 2 C 0.52 8.44 7.78 -10.99 -0.09 8.36 16 3 O -0.54 -11.52 15.96 5.56 0.09 -11.43 16 4 N -0.61 -9.39 2.16 -163.01 -0.35 -9.74 16 5 C 0.10 1.11 6.67 -2.52 -0.02 1.09 16 6 C -0.14 -1.46 7.09 -24.58 -0.17 -1.64 16 7 C -0.13 -1.90 5.30 -24.90 -0.13 -2.04 16 8 C 0.14 2.54 2.71 -66.95 -0.18 2.36 16 9 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 10 C -0.10 -2.13 2.06 -90.63 -0.19 -2.32 16 11 H 0.07 1.83 6.73 -51.93 -0.35 1.48 16 12 C -0.12 -2.47 8.44 37.16 0.31 -2.16 16 13 C 0.03 0.86 4.11 -27.89 -0.11 0.74 16 14 C -0.51 -14.86 8.49 -34.44 -0.29 -15.15 16 15 H 0.05 1.56 7.10 -52.48 -0.37 1.19 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 18 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 24 H 0.08 0.68 7.95 -51.93 -0.41 0.26 16 25 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.07 0.58 7.47 -51.93 -0.39 0.19 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.38 5.56 -51.93 -0.29 1.09 16 31 H 0.06 1.20 7.18 -51.93 -0.37 0.83 16 32 H 0.03 0.49 7.26 -51.93 -0.38 0.11 16 33 H 0.05 0.87 6.30 -51.93 -0.33 0.54 16 34 H 0.02 0.49 7.29 -51.93 -0.38 0.11 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 285.80 15.07 4.31 4.31 Total: -1.00 -33.56 285.80 -6.65 -40.22 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.78 Total: -3.42 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -0.63 Total: -10.64 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.38 Total: -36.38 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.56 -6.65 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260491454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.639 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds