Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 119.99604 * 2 1 4 4 N 1.34771 * 119.99956 * 180.02562 * 2 1 3 5 5 C 1.47427 * 125.64920 * 354.90135 * 4 2 1 6 6 C 1.54917 * 104.82836 * 155.84321 * 5 4 2 7 7 C 1.55153 * 101.58221 * 37.00918 * 6 5 4 8 8 C 1.47026 * 125.64756 * 174.87259 * 4 2 1 9 9 H 1.09006 * 109.87670 * 300.65613 * 8 4 2 10 10 C 1.53001 * 109.88589 * 61.66834 * 8 4 2 11 11 H 1.08999 * 109.46762 * 298.54467 * 10 8 4 12 12 C 1.52997 * 109.46823 * 58.54039 * 10 8 4 13 13 C 1.52991 * 109.47196 * 178.54195 * 10 8 4 14 14 C 1.50697 * 109.47571 * 174.45970 * 13 10 8 15 15 H 1.08007 * 119.99416 * 359.97438 * 14 13 10 16 16 C 1.37872 * 120.00512 * 179.97438 * 14 13 10 17 17 N 1.31518 * 119.99882 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00108 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47060 * 59.99977 * 18 16 14 20 20 H 1.48501 * 109.46957 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47126 * 299.99961 * 18 16 14 22 22 H 1.09002 * 109.47296 * 239.99611 * 1 2 3 23 23 H 1.08998 * 109.47555 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47133 * 120.00133 * 1 2 3 25 25 H 1.08997 * 110.36901 * 274.67533 * 5 4 2 26 26 H 1.09000 * 110.36477 * 36.89708 * 5 4 2 27 27 H 1.09003 * 111.00380 * 155.08787 * 6 5 4 28 28 H 1.08999 * 110.99973 * 278.89925 * 6 5 4 29 29 H 1.08998 * 110.71998 * 206.13370 * 7 6 5 30 30 H 1.09001 * 110.72234 * 82.86399 * 7 6 5 31 31 H 1.08999 * 109.46794 * 186.36991 * 12 10 8 32 32 H 1.09000 * 109.47371 * 306.37381 * 12 10 8 33 33 H 1.09007 * 109.47288 * 66.37177 * 12 10 8 34 34 H 1.09000 * 109.47456 * 294.46038 * 13 10 8 35 35 H 1.09002 * 109.47660 * 54.45569 * 13 10 8 36 36 H 0.96998 * 119.99782 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5771 -2.5080 0.1053 6 6 2.6097 -3.4604 -0.5477 7 6 3.9503 -2.8258 -0.0925 8 6 3.6399 -1.3142 -0.1074 9 1 3.9898 -0.8707 -1.0396 10 6 4.3201 -0.6315 1.0809 11 1 4.0859 0.4330 1.0712 12 6 3.8143 -1.2532 2.3842 13 6 5.8348 -0.8214 0.9795 14 6 6.5139 -0.0363 2.0720 15 1 5.9239 0.5408 2.7688 16 6 7.8881 -0.0546 2.1821 17 7 8.6064 -0.7570 1.3334 18 14 8.7297 0.9192 3.5359 19 1 8.2573 0.4378 4.8589 20 1 10.1999 0.7348 3.4375 21 1 8.4010 2.3597 3.3872 22 1 -0.3634 -0.5139 0.8900 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 1.4244 -2.7737 1.1513 26 1 0.6317 -2.5420 -0.4360 27 1 2.5058 -4.4740 -0.1603 28 1 2.5199 -3.4484 -1.6339 29 1 4.7478 -3.0626 -0.7967 30 1 4.2116 -3.1559 0.9129 31 1 4.2111 -0.6939 3.2315 32 1 2.7250 -1.2190 2.4043 33 1 4.1465 -2.2896 2.4454 34 1 6.0766 -1.8787 1.0880 35 1 6.1813 -0.4673 0.0086 36 1 9.5732 -0.7702 1.4111 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260491454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = -74.508844 kcal Electronic energy + Delta-G solvation = -16282.264140 eV Core-core repulsion = 13764.775465 eV Total energy + Delta-G solvation = -2517.488674 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.29747 -38.73677 -36.24501 -34.16818 -32.73089 -30.44643 -29.15965 -28.58037 -25.66168 -24.22727 -22.72587 -20.88907 -19.43791 -18.49364 -17.82575 -17.32054 -16.50965 -16.11227 -15.92710 -15.16861 -14.58177 -14.43691 -14.22531 -13.78964 -13.68164 -13.25384 -13.13805 -13.01391 -12.84593 -12.74465 -12.60742 -12.28744 -12.16058 -11.97731 -11.70431 -11.29429 -11.21444 -11.04927 -10.66858 -10.52676 -9.52810 -8.20421 -6.29676 1.35335 1.38869 1.46648 1.71294 2.15059 2.39612 3.11872 3.60117 3.74260 4.01136 4.04929 4.28625 4.34762 4.40299 4.53085 4.59302 4.65589 4.69790 4.75291 4.95622 5.02781 5.07178 5.09252 5.14166 5.20714 5.26180 5.34428 5.43715 5.48441 5.61584 5.78345 5.87419 6.28187 6.71413 6.84054 7.27604 7.37935 8.90989 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.007364 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.985847 B = 3801.485329 C = 4236.691907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.504 3.496 3 O -0.606 6.606 4 N -0.612 5.612 5 C 0.095 3.905 6 C -0.120 4.120 7 C -0.127 4.127 8 C 0.141 3.859 9 H 0.037 0.963 10 C -0.088 4.088 11 H 0.031 0.969 12 C -0.112 4.112 13 C 0.044 3.956 14 C -0.536 4.536 15 H 0.049 0.951 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.275 1.275 22 H 0.111 0.889 23 H 0.086 0.914 24 H 0.115 0.885 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.010 0.990 35 H -0.024 1.024 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.874 -8.168 -2.492 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.296 3.704 3 O -0.488 6.488 4 N -0.345 5.345 5 C -0.026 4.026 6 C -0.158 4.158 7 C -0.165 4.165 8 C 0.037 3.963 9 H 0.056 0.944 10 C -0.107 4.107 11 H 0.050 0.950 12 C -0.169 4.169 13 C 0.006 3.994 14 C -0.574 4.574 15 H 0.067 0.933 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.783 3.217 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.201 1.201 22 H 0.129 0.871 23 H 0.105 0.895 24 H 0.134 0.866 25 H 0.099 0.901 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.029 0.971 35 H -0.006 1.006 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.459 -7.609 -2.538 19.214 hybrid contribution 1.268 0.959 0.458 1.655 sum -16.191 -6.650 -2.080 17.627 Atomic orbital electron populations 1.21891 0.87120 1.05865 1.06423 1.21580 0.92375 0.81591 0.74895 1.90723 1.72388 1.33112 1.52557 1.48799 1.06801 1.07341 1.71593 1.22664 0.97967 0.79712 1.02218 1.22805 0.91942 0.99632 1.01427 1.22699 0.99251 0.91580 1.02925 1.21523 0.80778 0.97501 0.96465 0.94439 1.21295 0.95977 0.98162 0.95312 0.95002 1.21523 0.99041 1.00224 0.96077 1.18918 0.90476 0.95758 0.94236 1.21575 0.92177 1.29233 1.14454 0.93324 1.25886 0.98267 0.96654 0.98668 1.70071 1.06221 1.42477 1.38286 0.85604 0.77404 0.78988 0.79688 1.18945 1.20251 1.20065 0.87067 0.89529 0.86640 0.90090 0.87053 0.87108 0.89976 0.91116 0.90310 0.94849 0.92783 0.92192 0.97133 1.00588 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.25 71.24 0.66 -2.04 16 2 C 0.50 15.98 7.78 87.66 0.68 16.66 16 3 O -0.61 -27.05 15.96 -3.03 -0.05 -27.10 16 4 N -0.61 -17.86 2.16 -788.03 -1.70 -19.56 16 5 C 0.10 1.67 6.67 86.86 0.58 2.25 16 6 C -0.12 -2.15 7.09 31.99 0.23 -1.93 16 7 C -0.13 -3.72 5.30 31.78 0.17 -3.55 16 8 C 0.14 5.26 2.71 45.34 0.12 5.38 16 9 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 10 C -0.09 -4.07 2.06 -10.80 -0.02 -4.09 16 11 H 0.03 1.71 6.73 -2.39 -0.02 1.70 16 12 C -0.11 -4.45 8.44 71.98 0.61 -3.84 16 13 C 0.04 2.43 4.11 29.84 0.12 2.55 16 14 C -0.54 -32.49 8.49 25.60 0.22 -32.27 16 15 H 0.05 2.93 7.10 -2.91 -0.02 2.90 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 18 Si 0.96 46.54 29.54 68.60 2.03 48.56 16 19 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 24 H 0.12 1.30 7.95 -2.38 -0.02 1.28 16 25 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 26 H 0.11 1.12 7.47 -2.39 -0.02 1.11 16 27 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.44 5.56 -2.39 -0.01 2.42 16 31 H 0.03 1.45 7.18 -2.39 -0.02 1.43 16 32 H 0.05 1.84 7.26 -2.39 -0.02 1.82 16 33 H 0.06 2.21 6.30 -2.38 -0.02 2.19 16 34 H 0.01 0.59 7.29 -2.39 -0.02 0.57 16 35 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 16 36 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -78.68 285.80 5.43 -73.26 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.04 Total: 2.94 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 3.83 Total: -20.23 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.42 Total: -77.42 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.05 Total: -27.10 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -78.68 5.43 -73.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260491454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.251 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds