Wall clock time and date at job start Mon Mar 30 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21290 * 119.99606 * 2 1 4 4 N 1.34769 * 120.00440 * 180.02562 * 2 1 3 5 5 C 1.47430 * 125.64594 * 4.69360 * 4 2 1 6 6 C 1.54908 * 104.83028 * 155.89219 * 5 4 2 7 7 C 1.55155 * 101.58539 * 37.00522 * 6 5 4 8 8 C 1.47022 * 125.64856 * 184.71417 * 4 2 1 9 9 H 1.09004 * 110.01338 * 300.52701 * 8 4 2 10 10 C 1.52994 * 109.88333 * 61.62367 * 8 4 2 11 11 H 1.08996 * 109.47063 * 296.58893 * 10 8 4 12 12 C 1.52994 * 109.47386 * 176.58706 * 10 8 4 13 13 C 1.53003 * 109.47240 * 56.58307 * 10 8 4 14 14 C 1.50699 * 109.47399 * 185.65226 * 13 10 8 15 15 H 1.08003 * 119.99843 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00078 * 180.02562 * 14 13 10 17 17 N 1.31514 * 120.00122 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00001 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46800 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47304 * 120.00071 * 18 16 14 21 21 H 1.48498 * 109.46857 * 240.00174 * 18 16 14 22 22 H 1.08997 * 109.46644 * 269.99214 * 1 2 3 23 23 H 1.09000 * 109.47416 * 29.99663 * 1 2 3 24 24 H 1.09003 * 109.46452 * 149.99909 * 1 2 3 25 25 H 1.08999 * 110.36780 * 37.05014 * 5 4 2 26 26 H 1.08996 * 110.45803 * 274.77382 * 5 4 2 27 27 H 1.09003 * 111.00518 * 278.93244 * 6 5 4 28 28 H 1.08999 * 111.00872 * 155.08260 * 6 5 4 29 29 H 1.08994 * 110.72588 * 206.13353 * 7 6 5 30 30 H 1.09002 * 110.87132 * 82.93327 * 7 6 5 31 31 H 1.09004 * 109.47080 * 300.00382 * 12 10 8 32 32 H 1.09005 * 109.47018 * 59.99782 * 12 10 8 33 33 H 1.08998 * 109.47367 * 179.97438 * 12 10 8 34 34 H 1.08992 * 109.47240 * 305.65917 * 13 10 8 35 35 H 1.09001 * 109.46977 * 65.65474 * 13 10 8 36 36 H 0.97000 * 119.99825 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.5766 -2.5082 -0.0992 6 6 2.7004 -3.4085 -0.6703 7 6 3.9549 -2.8232 0.0302 8 6 3.6406 -1.3137 0.0976 9 1 4.1240 -0.7971 -0.7316 10 6 4.1332 -0.7385 1.4269 11 1 3.9273 0.3314 1.4583 12 6 5.6396 -0.9720 1.5569 13 6 3.4081 -1.4313 2.5825 14 6 3.7892 -0.7714 3.8825 15 1 4.4792 0.0595 3.8844 16 6 3.2570 -1.2282 5.0695 17 7 2.4171 -2.2402 5.0673 18 14 3.7288 -0.4096 6.6810 19 1 4.6826 0.6968 6.4135 20 1 2.5114 0.1330 7.3357 21 1 4.3681 -1.4084 7.5748 22 1 -0.3632 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3632 -0.8900 -0.5139 25 1 0.7231 -2.4907 -0.7769 26 1 1.2710 -2.8617 0.8856 27 1 2.7728 -3.3035 -1.7529 28 1 2.5468 -4.4505 -0.3899 29 1 4.8494 -3.0046 -0.5656 30 1 4.0697 -3.2382 1.0316 31 1 5.8454 -2.0420 1.5254 32 1 6.1561 -0.4784 0.7336 33 1 5.9906 -0.5618 2.5037 34 1 2.3311 -1.3507 2.4360 35 1 3.6930 -2.4830 2.6117 36 1 2.0424 -2.5614 5.9024 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260491462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:17 Heat of formation + Delta-G solvation = -73.505811 kcal Electronic energy + Delta-G solvation = -16529.769746 eV Core-core repulsion = 14012.324567 eV Total energy + Delta-G solvation = -2517.445179 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26804 -38.70803 -36.13558 -34.24321 -32.70910 -30.45046 -29.45203 -28.17277 -25.62585 -24.27283 -22.75542 -20.93851 -19.35690 -18.63061 -17.87957 -17.14844 -16.53364 -16.12981 -15.80046 -15.12918 -14.56232 -14.34376 -14.16739 -13.88803 -13.72416 -13.32270 -13.14361 -12.94450 -12.83608 -12.80735 -12.65179 -12.30694 -12.14480 -11.93288 -11.56040 -11.48762 -11.05535 -10.86844 -10.77170 -10.48760 -9.48367 -8.19204 -6.26155 1.34056 1.35395 1.47799 1.69609 2.22005 2.39340 3.13432 3.60439 3.74214 4.02861 4.07152 4.26686 4.37423 4.44099 4.50643 4.59325 4.63740 4.67749 4.73410 4.91889 5.01738 5.02336 5.10803 5.16245 5.23567 5.31642 5.41699 5.45995 5.53700 5.59548 5.86249 5.93840 6.32824 6.69926 6.87924 7.25646 7.40526 8.91901 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.009165 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.093915 B = 3054.297751 C = 3293.802403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.510 3.490 3 O -0.604 6.604 4 N -0.609 5.609 5 C 0.092 3.908 6 C -0.119 4.119 7 C -0.127 4.127 8 C 0.139 3.861 9 H 0.063 0.937 10 C -0.096 4.096 11 H 0.027 0.973 12 C -0.123 4.123 13 C 0.054 3.946 14 C -0.535 4.535 15 H 0.044 0.956 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.951 3.049 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.273 1.273 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.039 0.961 34 H -0.012 1.012 35 H 0.005 0.995 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -4.491 -12.474 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.301 3.699 3 O -0.486 6.486 4 N -0.342 5.342 5 C -0.030 4.030 6 C -0.156 4.156 7 C -0.165 4.165 8 C 0.035 3.965 9 H 0.081 0.919 10 C -0.115 4.115 11 H 0.046 0.954 12 C -0.181 4.181 13 C 0.017 3.983 14 C -0.573 4.573 15 H 0.062 0.938 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.198 1.198 22 H 0.107 0.893 23 H 0.118 0.882 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.006 0.994 35 H 0.023 0.977 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.976 -3.991 -12.370 13.147 hybrid contribution 0.149 0.680 1.414 1.576 sum -1.827 -3.311 -10.955 11.589 Atomic orbital electron populations 1.21889 0.88503 1.06354 1.05129 1.21256 0.92038 0.81852 0.74736 1.90642 1.72184 1.32669 1.53115 1.48681 1.07758 1.06726 1.70997 1.22585 0.98118 0.80995 1.01262 1.22763 0.92443 0.99586 1.00838 1.22765 0.99950 0.91775 1.02006 1.21674 0.80780 0.97849 0.96149 0.91862 1.21376 0.96716 0.98262 0.95160 0.95448 1.21604 0.94186 1.01690 1.00619 1.18836 0.93727 0.94378 0.91322 1.21688 1.26197 1.15926 0.93506 0.93813 1.25768 0.95171 0.95746 1.02413 1.70057 1.31928 1.27011 1.27622 0.85612 0.78181 0.78706 0.79865 1.19613 1.20508 1.19833 0.89258 0.88175 0.87103 0.87425 0.92824 0.88697 0.88096 0.88201 0.91485 0.91857 0.92398 0.94163 0.99351 0.97657 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 9.95 71.24 0.71 -3.51 16 2 C 0.51 19.36 7.71 87.66 0.68 20.04 16 3 O -0.60 -28.66 16.35 -3.06 -0.05 -28.71 16 4 N -0.61 -21.19 2.08 -788.04 -1.64 -22.83 16 5 C 0.09 2.40 6.57 86.85 0.57 2.97 16 6 C -0.12 -2.51 7.08 31.99 0.23 -2.29 16 7 C -0.13 -3.58 5.18 31.78 0.16 -3.41 16 8 C 0.14 5.00 2.67 45.34 0.12 5.12 16 9 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 10 C -0.10 -4.31 2.05 -10.80 -0.02 -4.33 16 11 H 0.03 1.43 7.10 -2.39 -0.02 1.42 16 12 C -0.12 -4.83 8.75 71.98 0.63 -4.20 16 13 C 0.05 2.88 4.00 29.85 0.12 3.00 16 14 C -0.54 -31.67 8.41 25.60 0.22 -31.45 16 15 H 0.04 2.61 7.10 -2.91 -0.02 2.59 16 16 C 0.01 0.40 5.46 84.65 0.46 0.86 16 17 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 18 Si 0.95 45.90 29.54 68.60 2.03 47.93 16 19 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 23 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.11 2.07 6.51 -2.39 -0.02 2.05 16 25 H 0.11 1.96 6.86 -2.39 -0.02 1.94 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.26 5.55 -2.39 -0.01 2.25 16 31 H 0.06 2.25 6.96 -2.38 -0.02 2.23 16 32 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.04 1.72 7.00 -2.39 -0.02 1.71 16 34 H -0.01 -0.69 7.32 -2.39 -0.02 -0.70 16 35 H 0.01 0.29 6.35 -2.39 -0.02 0.27 16 36 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -74.58 284.62 5.54 -69.04 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.05 Total: 7.39 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 3.87 Total: -17.21 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.36 Total: -78.44 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.05 Total: -28.71 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.58 5.54 -69.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260491462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.462 kcal (2) G-P(sol) polarization free energy of solvation -74.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds